Wall clock time and date at job start Fri Apr 10 2020 18:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99831 * 2 1 4 4 H 1.48505 * 109.46857 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46975 * 299.99620 * 3 2 1 6 6 H 1.48501 * 109.47096 * 60.00071 * 3 2 1 7 7 C 1.38810 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00506 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99655 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64899 * 359.96853 * 9 7 2 11 11 C 1.54912 * 104.83107 * 155.91204 * 10 9 7 12 12 C 1.55158 * 101.58528 * 37.00806 * 11 10 9 13 13 H 1.08999 * 110.71844 * 83.03960 * 12 11 10 14 14 C 1.52992 * 110.72116 * 206.14025 * 12 11 10 15 15 N 1.46507 * 109.47305 * 182.56170 * 14 12 11 16 16 C 1.34768 * 120.00022 * 179.97438 * 15 14 12 17 17 O 1.21575 * 120.00191 * 359.97438 * 16 15 14 18 18 C 1.47627 * 119.99833 * 179.97438 * 16 15 14 19 19 N 1.33060 * 120.52637 * 0.02562 * 18 16 15 20 20 N 1.28717 * 120.36324 * 179.97438 * 19 18 16 21 21 C 1.32944 * 121.55226 * 0.02562 * 20 19 18 22 22 O 1.35292 * 119.46299 * 180.02562 * 21 20 19 23 23 N 1.32460 * 121.06339 * 0.26901 * 21 20 19 24 24 C 1.32862 * 119.51459 * 359.46497 * 23 21 20 25 25 O 1.35287 * 120.71876 * 180.26059 * 24 23 21 26 26 C 1.47322 * 125.61311 * 180.19794 * 9 7 2 27 27 H 0.96998 * 120.00235 * 359.97438 * 1 2 3 28 28 H 1.09000 * 110.36671 * 37.06997 * 10 9 7 29 29 H 1.09000 * 110.45987 * 274.78853 * 10 9 7 30 30 H 1.09007 * 111.00123 * 278.93586 * 11 10 9 31 31 H 1.09000 * 111.03981 * 155.10195 * 11 10 9 32 32 H 1.08995 * 109.47559 * 62.55837 * 14 12 11 33 33 H 1.09003 * 109.47121 * 302.55360 * 14 12 11 34 34 H 0.97001 * 119.99411 * 359.97438 * 15 14 12 35 35 H 0.96700 * 114.00323 * 90.00055 * 22 21 20 36 36 H 0.96695 * 114.00269 * 270.26209 * 25 24 23 37 37 H 1.08996 * 110.06673 * 61.67781 * 26 9 7 38 38 H 1.09002 * 109.84567 * 300.41364 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5331 0.0007 11 6 -0.4016 -3.9326 -0.6106 12 6 0.7784 -4.7525 -0.0252 13 1 0.5447 -5.1003 0.9810 14 6 1.1232 -5.9317 -0.9370 15 7 2.1977 -6.7209 -0.3296 16 6 2.6678 -7.8160 -0.9589 17 8 2.2000 -8.1493 -2.0304 18 6 3.7509 -8.6109 -0.3470 19 7 4.2702 -8.2560 0.8255 20 7 5.2142 -8.9517 1.3564 21 6 5.6990 -10.0363 0.7597 22 8 6.6913 -10.7365 1.3561 23 7 5.2295 -10.4397 -0.4113 24 6 4.2511 -9.7561 -0.9949 25 8 3.7497 -10.1493 -2.1883 26 6 1.9338 -3.7298 0.0052 27 1 -0.4850 0.8400 0.0004 28 1 -0.5993 -1.7591 -0.6152 29 1 -0.5290 -2.4858 1.0184 30 1 -0.3520 -3.8989 -1.6990 31 1 -1.3590 -4.3333 -0.2775 32 1 1.4509 -5.5574 -1.9068 33 1 0.2416 -6.5590 -1.0687 34 1 2.5707 -6.4552 0.5255 35 1 6.3793 -11.4371 1.9450 36 1 4.2041 -9.7665 -2.9512 37 1 2.5276 -3.8681 0.9087 38 1 2.5623 -3.8543 -0.8766 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028662976.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:07 Heat of formation + Delta-G solvation = 1.625396 kcal Electronic energy + Delta-G solvation = -24822.065102 eV Core-core repulsion = 20895.905266 eV Total energy + Delta-G solvation = -3926.159836 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.59181 -39.93331 -38.75026 -38.18466 -37.63502 -34.95222 -34.73898 -32.82534 -32.16116 -29.82307 -28.34975 -26.73792 -25.82055 -25.19981 -23.58629 -21.55077 -20.54009 -20.29844 -19.87412 -19.81421 -19.01324 -18.15520 -16.89754 -16.83041 -16.28800 -15.98152 -15.61362 -15.01732 -14.64041 -14.40123 -14.22151 -13.64691 -13.53595 -13.18275 -12.94393 -12.88009 -12.52783 -12.17836 -12.01101 -11.82595 -11.74583 -11.53696 -10.96099 -10.82776 -10.61778 -10.51827 -10.31312 -10.10811 -10.03098 -9.95348 -9.80699 -9.54132 -9.16368 -8.66249 -6.84499 -5.66462 -3.07988 -0.52734 -0.23141 1.94023 2.11439 2.46382 2.67472 2.91834 3.25628 3.39432 3.45110 3.47484 3.90271 4.11492 4.40818 4.48348 4.85568 5.03881 5.19417 5.36490 5.50543 5.64125 5.81992 5.87997 5.97552 6.03775 6.21988 6.31693 6.53847 6.55205 6.55604 6.67227 6.68641 6.87445 7.22224 7.50152 7.60119 7.62208 7.83901 7.85719 8.35278 9.21363 9.82025 10.46536 11.37656 Molecular weight = 309.13amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.002780 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.244863 B =10069.618130 C =10863.644953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.134 4.134 12 C -0.116 4.116 13 H 0.079 0.921 14 C 0.131 3.869 15 N -0.698 5.698 16 C 0.577 3.423 17 O -0.512 6.512 18 C -0.050 4.050 19 N -0.110 5.110 20 N -0.280 5.280 21 C 0.480 3.520 22 O -0.446 6.446 23 N -0.510 5.510 24 C 0.422 3.578 25 O -0.441 6.441 26 C 0.139 3.861 27 H 0.251 0.749 28 H 0.107 0.893 29 H 0.012 0.988 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.413 0.587 35 H 0.422 0.578 36 H 0.423 0.577 37 H 0.021 0.979 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.880 -21.714 -0.048 22.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.136 4.136 13 H 0.097 0.903 14 C 0.008 3.992 15 N -0.349 5.349 16 C 0.357 3.643 17 O -0.387 6.387 18 C -0.203 4.203 19 N 0.031 4.969 20 N -0.142 5.142 21 C 0.175 3.825 22 O -0.249 6.249 23 N -0.253 5.253 24 C 0.224 3.776 25 O -0.249 6.249 26 C 0.013 3.987 27 H 0.062 0.938 28 H 0.125 0.875 29 H 0.030 0.970 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.249 0.751 35 H 0.285 0.715 36 H 0.288 0.712 37 H 0.039 0.961 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.981 -21.513 0.061 22.618 hybrid contribution 0.580 0.373 -0.216 0.722 sum 7.561 -21.140 -0.156 22.452 Atomic orbital electron populations 1.69798 1.04887 1.24667 1.57773 1.24785 0.95735 0.97730 1.02481 0.86003 0.78671 0.83613 0.77246 1.20531 1.21744 1.21755 1.19129 0.90544 0.82470 1.42855 0.90462 1.44583 1.01945 0.99695 1.86868 1.21932 0.84662 0.92462 0.98255 1.23008 0.95429 0.98586 1.00330 1.22472 0.98494 0.93855 0.98735 0.90301 1.21636 0.88758 0.91686 0.97131 1.45977 1.38058 1.25943 1.24887 1.17003 0.81333 0.81059 0.84885 1.90872 1.58075 1.69293 1.20431 1.24157 1.02231 0.96675 0.97212 1.74030 0.99692 1.18339 1.04791 1.73897 1.06788 1.06465 1.27066 1.21897 0.85628 0.89160 0.85782 1.84702 1.26431 1.50727 1.63034 1.68197 1.11220 1.33440 1.12448 1.19901 0.84488 0.84322 0.88932 1.84670 1.56397 1.71601 1.12258 1.21407 0.93408 0.85949 0.97908 0.93775 0.87499 0.96976 0.91767 0.92025 0.90558 0.90934 0.75119 0.71541 0.71234 0.96062 0.95743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.64 10.09 55.49 0.56 -26.08 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.22 -6.12 10.28 -15.06 -0.15 -6.28 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.16 3.40 -169.83 -0.58 -15.74 16 10 C 0.15 3.57 5.89 -2.53 -0.01 3.56 16 11 C -0.13 -2.37 6.54 -24.58 -0.16 -2.53 16 12 C -0.12 -1.83 2.98 -88.79 -0.26 -2.09 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.13 1.75 5.00 -4.04 -0.02 1.73 16 15 N -0.70 -8.55 5.42 -61.32 -0.33 -8.89 16 16 C 0.58 7.19 7.80 -12.43 -0.10 7.09 16 17 O -0.51 -7.36 15.27 -16.07 -0.25 -7.61 16 18 C -0.05 -0.55 6.85 -82.55 -0.57 -1.12 16 19 N -0.11 -1.25 10.88 33.45 0.36 -0.89 16 20 N -0.28 -3.08 11.60 29.21 0.34 -2.74 16 21 C 0.48 4.59 8.81 -90.59 -0.80 3.79 16 22 O -0.45 -3.06 13.63 -17.57 -0.24 -3.30 16 23 N -0.51 -5.13 10.57 -14.33 -0.15 -5.29 16 24 C 0.42 4.27 7.85 -16.15 -0.13 4.14 16 25 O -0.44 -3.94 11.76 -38.92 -0.46 -4.40 16 26 C 0.14 2.75 6.67 -2.90 -0.02 2.73 16 27 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.11 2.85 5.87 -51.93 -0.31 2.55 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 1.12 8.05 -51.92 -0.42 0.70 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.08 1.10 8.00 -51.93 -0.42 0.68 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.41 4.75 7.77 -40.82 -0.32 4.43 16 35 H 0.42 0.48 9.06 45.56 0.41 0.89 16 36 H 0.42 1.86 9.06 45.56 0.41 2.27 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 LS Contribution 330.02 15.07 4.97 4.97 Total: -1.00 -34.40 330.02 -5.80 -40.20 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -2.69 Total: 2.23 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -2.32 Total: 10.59 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.20 Total: -59.62 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.94 Total: -15.31 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.40 -5.80 -40.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028662976.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.824 kcal (2) G-P(sol) polarization free energy of solvation -34.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds