Wall clock time and date at job start Fri Apr 10 2020 18:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86799 * 120.00099 * 2 1 4 4 H 1.48497 * 109.47064 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46772 * 299.99621 * 3 2 1 6 6 H 1.48494 * 109.47119 * 59.99854 * 3 2 1 7 7 C 1.40054 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99597 * 179.97438 * 7 2 1 9 9 C 1.46368 * 120.00313 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99898 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00041 * 179.97438 * 9 7 2 12 12 C 1.46507 * 120.00171 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47241 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.46839 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46920 * 185.00439 * 14 13 12 16 16 C 1.38236 * 119.99824 * 307.73265 * 15 14 13 17 17 C 1.38236 * 120.00059 * 179.76555 * 16 15 14 18 18 C 1.38236 * 119.99772 * 0.51090 * 17 16 15 19 19 C 1.38237 * 120.00067 * 359.74455 * 18 17 16 20 20 C 1.38235 * 120.00014 * 359.97438 * 19 18 17 21 21 C 1.50700 * 109.46943 * 65.00809 * 14 13 12 22 22 C 1.38239 * 119.99489 * 231.93411 * 21 14 13 23 23 C 1.38230 * 119.99621 * 179.76750 * 22 21 14 24 24 C 1.38237 * 120.00170 * 0.50092 * 23 22 21 25 25 C 1.38236 * 120.00011 * 359.75401 * 24 23 22 26 26 C 1.38233 * 119.99935 * 359.97438 * 25 24 23 27 27 H 0.96995 * 119.99895 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00047 * 0.02562 * 11 9 7 29 29 H 1.08998 * 109.46687 * 60.00510 * 12 11 9 30 30 H 1.08995 * 109.46819 * 300.00806 * 12 11 9 31 31 H 1.09005 * 109.46837 * 60.00259 * 13 12 11 32 32 H 1.08996 * 109.47364 * 300.00741 * 13 12 11 33 33 H 1.08998 * 109.47444 * 304.99910 * 14 13 12 34 34 H 1.07999 * 120.00165 * 359.97438 * 16 15 14 35 35 H 1.07997 * 120.00299 * 180.23076 * 17 16 15 36 36 H 1.07996 * 120.00305 * 179.72700 * 18 17 16 37 37 H 1.07993 * 120.00309 * 179.97438 * 19 18 17 38 38 H 1.08004 * 120.00486 * 179.97438 * 20 19 18 39 39 H 1.08003 * 120.00062 * 359.97438 * 22 21 14 40 40 H 1.08007 * 120.00473 * 180.23019 * 23 22 21 41 41 H 1.08004 * 120.00460 * 179.72646 * 24 23 22 42 42 H 1.07996 * 120.00218 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.00376 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3463 -0.0006 5 1 1.8820 2.3963 -1.2126 6 1 1.8820 2.3964 1.2124 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0016 12 6 1.2164 -4.9165 -0.0010 13 6 2.2106 -6.0794 -0.0018 14 6 1.4456 -7.4044 -0.0018 15 6 2.4202 -8.5472 0.1213 16 6 3.4944 -8.6358 -0.7442 17 6 4.3912 -9.6814 -0.6282 18 6 4.2079 -10.6442 0.3467 19 6 3.1307 -10.5585 1.2089 20 6 2.2372 -9.5097 1.0966 21 6 0.6740 -7.5388 -1.2893 22 6 -0.6774 -7.8281 -1.2582 23 6 -1.3862 -7.9467 -2.4390 24 6 -0.7415 -7.7862 -3.6512 25 6 0.6110 -7.5021 -3.6825 26 6 1.3187 -7.3780 -2.5016 27 1 -0.4850 0.8400 -0.0004 28 1 2.9189 -3.6477 -0.0020 29 1 0.5888 -4.9740 -0.8903 30 1 0.5907 -4.9743 0.8896 31 1 2.8380 -6.0217 0.8878 32 1 2.8367 -6.0217 -0.8921 33 1 0.7538 -7.4246 0.8402 34 1 3.6350 -7.8863 -1.5090 35 1 5.2325 -9.7486 -1.3020 36 1 4.9059 -11.4635 0.4346 37 1 2.9872 -11.3108 1.9702 38 1 1.3954 -9.4429 1.7699 39 1 -1.1801 -7.9582 -0.3112 40 1 -2.4428 -8.1691 -2.4147 41 1 -1.2943 -7.8832 -4.5740 42 1 1.1148 -7.3772 -4.6296 43 1 2.3754 -7.1565 -2.5259 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005681807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:49 Heat of formation + Delta-G solvation = -2.117440 kcal Electronic energy + Delta-G solvation = -24279.428836 eV Core-core repulsion = 20867.496306 eV Total energy + Delta-G solvation = -3411.932531 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.147 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.22465 -38.63673 -37.28438 -35.40768 -33.04854 -32.19169 -31.17963 -30.73404 -30.27428 -29.35678 -26.56447 -25.08349 -23.27597 -22.24682 -22.06598 -21.81242 -19.92756 -19.56680 -17.11601 -16.97714 -16.87605 -15.67462 -15.31698 -15.24998 -14.76610 -14.62434 -14.40063 -14.33753 -13.95529 -13.61195 -13.32869 -13.27433 -13.07923 -12.62372 -12.43799 -12.25641 -12.06268 -11.77905 -11.36317 -11.29900 -11.13255 -11.00781 -10.94614 -10.86051 -10.55785 -10.41434 -10.36678 -10.15416 -9.01420 -8.84150 -8.82062 -8.78482 -8.55358 -7.55319 -7.42029 -6.14317 -4.59441 1.21715 1.30877 1.51021 1.52070 3.15190 3.23099 3.27702 3.67974 3.89260 4.13498 4.50608 4.64057 4.72078 4.83516 4.87450 4.94338 4.97375 5.03514 5.09202 5.19027 5.31130 5.40202 5.42677 5.52567 5.59033 5.69453 5.71464 5.82640 5.91366 5.91688 5.98568 6.05509 6.11001 6.14255 6.37169 6.40960 6.51357 6.56174 6.60444 6.63894 6.70445 6.75230 6.90588 7.10114 7.47343 7.99027 8.16860 8.38249 9.06811 9.60399 10.65156 10.84524 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.014327 B = 0.003341 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.820715 B = 8377.775803 C = 9509.195119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.768 5.768 12 C 0.136 3.864 13 C -0.118 4.118 14 C -0.009 4.009 15 C -0.063 4.063 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.128 4.128 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.063 4.063 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.118 4.118 26 C -0.111 4.111 27 H 0.267 0.733 28 H 0.379 0.621 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.677 -20.989 -2.542 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.464 6.464 11 N -0.424 5.424 12 C 0.010 3.990 13 C -0.155 4.155 14 C -0.027 4.027 15 C -0.063 4.063 16 C -0.130 4.130 17 C -0.137 4.137 18 C -0.146 4.146 19 C -0.138 4.138 20 C -0.133 4.133 21 C -0.063 4.063 22 C -0.131 4.131 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.137 4.137 26 C -0.129 4.129 27 H 0.078 0.922 28 H 0.210 0.790 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.577 -20.884 -2.540 21.530 hybrid contribution 0.891 0.800 -0.032 1.197 sum 5.468 -20.084 -2.571 20.973 Atomic orbital electron populations 1.70037 1.07041 1.27036 1.35636 1.25713 0.94604 1.00264 0.92667 0.86335 0.80489 0.81857 0.78170 1.18805 1.20204 1.20193 1.20929 0.93567 0.89475 1.54349 0.91463 1.18212 0.87212 0.82484 0.76303 1.90597 1.14122 1.86914 1.54749 1.46119 1.08446 1.05029 1.82798 1.20840 0.93867 0.83556 1.00698 1.21899 0.98404 0.92646 1.02590 1.19162 0.95126 0.92685 0.95770 1.19774 0.95494 0.95652 0.95416 1.21130 0.94468 0.98411 0.99001 1.21130 0.99224 0.94845 0.98546 1.21111 0.98181 0.99148 0.96181 1.21104 0.95122 0.98262 0.99336 1.21077 0.99501 0.94412 0.98345 1.19648 0.93816 0.98714 0.94158 1.21037 0.93661 1.00034 0.98349 1.21092 0.99650 1.00302 0.92568 1.21102 0.94844 1.00650 0.97807 1.21094 0.94565 0.99984 0.98010 1.21030 0.99888 0.99959 0.92001 0.92243 0.79024 0.93173 0.93675 0.91139 0.91363 0.89305 0.85880 0.86232 0.86423 0.86274 0.86071 0.86163 0.86260 0.86423 0.86304 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.50 11.83 55.55 0.66 -22.85 16 2 C 0.09 2.47 5.50 -17.36 -0.10 2.38 16 3 Si 0.91 20.43 29.56 -169.99 -5.02 15.41 16 4 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.55 -15.74 9.54 -35.63 -0.34 -16.08 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 9 C 0.55 16.19 7.75 -12.99 -0.10 16.09 16 10 O -0.58 -19.36 15.02 5.20 0.08 -19.28 16 11 N -0.77 -17.60 5.55 -61.72 -0.34 -17.95 16 12 C 0.14 2.66 5.49 -4.04 -0.02 2.64 16 13 C -0.12 -1.68 4.25 -26.73 -0.11 -1.79 16 14 C -0.01 -0.11 2.26 -92.92 -0.21 -0.32 16 15 C -0.06 -0.73 4.78 -104.62 -0.50 -1.23 16 16 C -0.11 -1.23 8.37 -39.58 -0.33 -1.56 16 17 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 18 C -0.13 -1.20 10.05 -39.58 -0.40 -1.59 16 19 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 20 C -0.12 -1.22 9.67 -39.58 -0.38 -1.61 16 21 C -0.06 -0.85 3.76 -104.62 -0.39 -1.24 16 22 C -0.11 -1.48 9.67 -39.58 -0.38 -1.86 16 23 C -0.12 -1.47 10.05 -39.59 -0.40 -1.87 16 24 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 25 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 26 C -0.11 -1.45 8.30 -39.58 -0.33 -1.77 16 27 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 28 H 0.38 7.57 8.45 -40.82 -0.35 7.22 16 29 H 0.05 1.08 7.38 -51.93 -0.38 0.70 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.92 5.95 -51.93 -0.31 0.61 16 33 H 0.09 1.09 7.66 -51.93 -0.40 0.69 16 34 H 0.12 1.26 5.15 -52.49 -0.27 0.99 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.12 1.12 7.96 -52.48 -0.42 0.70 16 39 H 0.12 1.39 7.96 -52.48 -0.42 0.97 16 40 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 41 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 42 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 43 H 0.12 1.41 5.02 -52.49 -0.26 1.15 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -35.95 359.19 -10.54 -46.49 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.73 Total: 9.50 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -5.59 Total: -16.73 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.31 Total: -40.79 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.08 Total: -19.28 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.95 -10.54 -46.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005681807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.368 kcal (2) G-P(sol) polarization free energy of solvation -35.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds