Wall clock time and date at job start Fri Apr 10 2020 18:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86799 * 120.00099 * 2 1 4 4 H 1.48497 * 109.47064 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46772 * 299.99621 * 3 2 1 6 6 H 1.48494 * 109.47119 * 59.99854 * 3 2 1 7 7 C 1.40054 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99597 * 179.97438 * 7 2 1 9 9 C 1.46368 * 120.00313 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99898 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00041 * 179.97438 * 9 7 2 12 12 C 1.46507 * 120.00171 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47241 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.46839 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46920 * 185.00439 * 14 13 12 16 16 C 1.38236 * 119.99824 * 307.73265 * 15 14 13 17 17 C 1.38236 * 120.00059 * 179.76555 * 16 15 14 18 18 C 1.38236 * 119.99772 * 0.51090 * 17 16 15 19 19 C 1.38237 * 120.00067 * 359.74455 * 18 17 16 20 20 C 1.38235 * 120.00014 * 359.97438 * 19 18 17 21 21 C 1.50700 * 109.46943 * 65.00809 * 14 13 12 22 22 C 1.38239 * 119.99489 * 231.93411 * 21 14 13 23 23 C 1.38230 * 119.99621 * 179.76750 * 22 21 14 24 24 C 1.38237 * 120.00170 * 0.50092 * 23 22 21 25 25 C 1.38236 * 120.00011 * 359.75401 * 24 23 22 26 26 C 1.38233 * 119.99935 * 359.97438 * 25 24 23 27 27 H 0.96995 * 119.99895 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00047 * 0.02562 * 11 9 7 29 29 H 1.08998 * 109.46687 * 60.00510 * 12 11 9 30 30 H 1.08995 * 109.46819 * 300.00806 * 12 11 9 31 31 H 1.09005 * 109.46837 * 60.00259 * 13 12 11 32 32 H 1.08996 * 109.47364 * 300.00741 * 13 12 11 33 33 H 1.08998 * 109.47444 * 304.99910 * 14 13 12 34 34 H 1.07999 * 120.00165 * 359.97438 * 16 15 14 35 35 H 1.07997 * 120.00299 * 180.23076 * 17 16 15 36 36 H 1.07996 * 120.00305 * 179.72700 * 18 17 16 37 37 H 1.07993 * 120.00309 * 179.97438 * 19 18 17 38 38 H 1.08004 * 120.00486 * 179.97438 * 20 19 18 39 39 H 1.08003 * 120.00062 * 359.97438 * 22 21 14 40 40 H 1.08007 * 120.00473 * 180.23019 * 23 22 21 41 41 H 1.08004 * 120.00460 * 179.72646 * 24 23 22 42 42 H 1.07996 * 120.00218 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.00376 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3463 -0.0006 5 1 1.8820 2.3963 -1.2126 6 1 1.8820 2.3964 1.2124 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0016 12 6 1.2164 -4.9165 -0.0010 13 6 2.2106 -6.0794 -0.0018 14 6 1.4456 -7.4044 -0.0018 15 6 2.4202 -8.5472 0.1213 16 6 3.4944 -8.6358 -0.7442 17 6 4.3912 -9.6814 -0.6282 18 6 4.2079 -10.6442 0.3467 19 6 3.1307 -10.5585 1.2089 20 6 2.2372 -9.5097 1.0966 21 6 0.6740 -7.5388 -1.2893 22 6 -0.6774 -7.8281 -1.2582 23 6 -1.3862 -7.9467 -2.4390 24 6 -0.7415 -7.7862 -3.6512 25 6 0.6110 -7.5021 -3.6825 26 6 1.3187 -7.3780 -2.5016 27 1 -0.4850 0.8400 -0.0004 28 1 2.9189 -3.6477 -0.0020 29 1 0.5888 -4.9740 -0.8903 30 1 0.5907 -4.9743 0.8896 31 1 2.8380 -6.0217 0.8878 32 1 2.8367 -6.0217 -0.8921 33 1 0.7538 -7.4246 0.8402 34 1 3.6350 -7.8863 -1.5090 35 1 5.2325 -9.7486 -1.3020 36 1 4.9059 -11.4635 0.4346 37 1 2.9872 -11.3108 1.9702 38 1 1.3954 -9.4429 1.7699 39 1 -1.1801 -7.9582 -0.3112 40 1 -2.4428 -8.1691 -2.4147 41 1 -1.2943 -7.8832 -4.5740 42 1 1.1148 -7.3772 -4.6296 43 1 2.3754 -7.1565 -2.5259 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005681807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:48 Heat of formation + Delta-G solvation = -23.210275 kcal Electronic energy + Delta-G solvation = -24280.343490 eV Core-core repulsion = 20867.496306 eV Total energy + Delta-G solvation = -3412.847185 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15759 -39.49411 -39.33736 -36.71586 -34.86824 -34.26685 -32.02079 -31.60284 -31.15624 -30.80994 -28.45253 -26.45976 -24.29650 -23.27494 -23.00246 -22.84334 -21.69394 -20.90328 -19.12937 -17.88151 -17.77555 -17.43018 -16.67424 -16.39217 -15.99428 -15.83486 -15.74376 -15.52185 -15.44881 -14.67263 -14.49797 -14.31814 -14.19296 -14.05773 -13.87547 -13.31455 -13.28176 -13.17144 -12.89952 -12.79272 -12.64524 -12.49337 -12.21663 -12.12140 -11.96694 -11.83207 -11.61854 -11.48092 -10.94713 -9.89742 -9.81383 -9.74458 -9.67183 -9.51029 -9.41883 -8.29019 -6.85642 0.36982 0.51271 0.57564 0.60261 1.40273 1.40634 1.58807 2.25035 2.47525 2.85137 2.94979 3.11681 3.61671 3.69019 3.78423 3.91129 4.11170 4.13125 4.19203 4.20874 4.24192 4.31148 4.35564 4.41499 4.58959 4.63528 4.69654 4.73613 4.77975 4.83036 5.04641 5.12864 5.15107 5.18940 5.21628 5.23802 5.32155 5.57817 5.61550 5.64067 5.67357 5.68687 5.80932 5.88169 6.13597 6.17830 6.24748 6.28061 6.86725 7.56512 8.49954 8.67993 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.014327 B = 0.003341 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.820715 B = 8377.775803 C = 9509.195119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.026 3.974 3 Si 1.000 3.000 4 H -0.246 1.246 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.535 3.465 10 O -0.634 6.634 11 N -0.755 5.755 12 C 0.142 3.858 13 C -0.100 4.100 14 C 0.000 4.000 15 C -0.076 4.076 16 C -0.124 4.124 17 C -0.126 4.126 18 C -0.130 4.130 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.076 4.076 22 C -0.134 4.134 23 C -0.129 4.129 24 C -0.136 4.136 25 C -0.129 4.129 26 C -0.125 4.125 27 H 0.274 0.726 28 H 0.395 0.605 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.047 -21.452 -2.782 23.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.189 4.189 3 Si 0.819 3.181 4 H -0.169 1.169 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.610 4.610 8 H 0.107 0.893 9 C 0.339 3.661 10 O -0.522 6.522 11 N -0.410 5.410 12 C 0.018 3.982 13 C -0.138 4.138 14 C -0.019 4.019 15 C -0.076 4.076 16 C -0.142 4.142 17 C -0.143 4.143 18 C -0.148 4.148 19 C -0.143 4.143 20 C -0.146 4.146 21 C -0.076 4.076 22 C -0.152 4.152 23 C -0.147 4.147 24 C -0.153 4.153 25 C -0.147 4.147 26 C -0.143 4.143 27 H 0.084 0.916 28 H 0.229 0.771 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.143 0.857 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.156 0.844 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.000 -21.402 -2.778 22.688 hybrid contribution 0.133 0.838 0.035 0.849 sum 7.133 -20.564 -2.743 21.938 Atomic orbital electron populations 1.70207 1.09609 1.28853 1.36590 1.27024 0.95550 1.05089 0.91201 0.84938 0.79359 0.75239 0.78523 1.16863 1.19358 1.19317 1.21475 0.94761 0.90066 1.54692 0.89342 1.18659 0.86854 0.84484 0.76059 1.90549 1.16343 1.88058 1.57241 1.45808 1.09289 1.04800 1.81098 1.20862 0.94686 0.84025 0.98659 1.21746 0.97191 0.91223 1.03592 1.19030 0.95189 0.92217 0.95496 1.19679 0.95710 0.95726 0.96518 1.21250 0.94715 0.99144 0.99086 1.21420 0.99489 0.94447 0.98987 1.21468 0.98319 0.99511 0.95501 1.21408 0.94799 0.98250 0.99825 1.21273 1.00225 0.94727 0.98386 1.19817 0.94099 0.99042 0.94664 1.21300 0.94027 1.00691 0.99167 1.21411 1.00701 1.00048 0.92567 1.21448 0.95097 1.00162 0.98640 1.21434 0.94965 0.99604 0.98730 1.21250 1.00563 1.00277 0.92199 0.91610 0.77099 0.95492 0.95509 0.90126 0.90202 0.89561 0.85683 0.84298 0.84031 0.84176 0.85393 0.85506 0.84492 0.84249 0.84376 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.52 11.83 21.84 0.26 -51.26 16 2 C 0.03 1.49 5.50 85.31 0.47 1.95 16 3 Si 1.00 41.52 29.56 68.60 2.03 43.55 16 4 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 7 C -0.57 -33.22 9.54 24.83 0.24 -32.98 16 8 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 9 C 0.54 32.15 7.75 86.36 0.67 32.82 16 10 O -0.63 -44.17 15.02 -4.31 -0.06 -44.23 16 11 N -0.76 -35.17 5.55 -467.41 -2.59 -37.77 16 12 C 0.14 5.77 5.49 86.38 0.47 6.24 16 13 C -0.10 -2.83 4.25 30.59 0.13 -2.70 16 14 C 0.00 -0.01 2.26 -12.29 -0.03 -0.04 16 15 C -0.08 -1.71 4.78 -19.86 -0.09 -1.80 16 16 C -0.12 -2.56 8.37 22.27 0.19 -2.37 16 17 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 18 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 19 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 20 C -0.13 -2.59 9.67 22.27 0.22 -2.38 16 21 C -0.08 -2.07 3.76 -19.86 -0.07 -2.14 16 22 C -0.13 -3.61 9.67 22.27 0.22 -3.40 16 23 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 24 C -0.14 -3.24 10.05 22.27 0.22 -3.01 16 25 C -0.13 -3.16 10.05 22.27 0.22 -2.94 16 26 C -0.13 -3.25 8.30 22.27 0.18 -3.07 16 27 H 0.27 15.46 8.29 -92.71 -0.77 14.69 16 28 H 0.40 15.63 8.45 -92.71 -0.78 14.85 16 29 H 0.03 1.22 7.38 -2.39 -0.02 1.20 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.08 2.09 5.95 -2.39 -0.01 2.07 16 33 H 0.09 2.18 7.66 -2.39 -0.02 2.16 16 34 H 0.13 2.42 5.15 -2.91 -0.02 2.41 16 35 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 36 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.13 2.29 7.96 -2.91 -0.02 2.27 16 39 H 0.13 3.08 7.96 -2.91 -0.02 3.05 16 40 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 42 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.13 2.98 5.02 -2.91 -0.01 2.97 16 Total: -1.00 -80.27 359.19 3.79 -76.48 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: 0.24 Total: 37.83 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 3.93 Total: -24.59 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -2.34 Total: -89.03 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -0.06 Total: -44.23 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -80.27 3.79 -76.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005681807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.266 kcal (2) G-P(sol) polarization free energy of solvation -80.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds