Wall clock time and date at job start Fri Apr 10 2020 18:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45204 * 109.47590 * 2 1 4 4 C 1.34755 * 117.00338 * 179.97438 * 3 2 1 5 5 O 1.21533 * 120.00225 * 0.02562 * 4 3 2 6 6 C 1.47256 * 120.00321 * 180.02562 * 4 3 2 7 7 C 1.38323 * 126.46029 * 270.02818 * 6 4 3 8 8 C 1.50703 * 125.79899 * 359.97254 * 7 6 4 9 9 N 1.34197 * 108.40155 * 180.23962 * 7 6 4 10 10 H 0.97004 * 125.38100 * 179.73424 * 9 7 6 11 11 C 1.37835 * 109.22759 * 359.56971 * 9 7 6 12 12 C 1.46643 * 125.84788 * 180.15642 * 11 9 7 13 13 O 1.21603 * 119.99909 * 180.32769 * 12 11 9 14 14 O 1.34873 * 120.00309 * 0.32223 * 12 11 9 15 15 C 1.45200 * 117.00022 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46803 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.46884 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00118 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99708 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00259 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99850 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47112 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47377 * 119.99695 * 21 19 17 24 24 H 1.48502 * 109.47239 * 239.99725 * 21 19 17 25 25 C 1.36417 * 108.30274 * 0.42974 * 11 9 7 26 26 C 1.50694 * 126.50418 * 179.76531 * 25 11 9 27 27 H 1.09000 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47017 * 299.99947 * 1 2 3 29 29 H 1.09005 * 109.46956 * 59.99695 * 1 2 3 30 30 H 1.09005 * 109.47017 * 240.00052 * 2 1 3 31 31 H 1.08999 * 109.47277 * 120.00521 * 2 1 3 32 32 H 1.09002 * 109.47152 * 90.00231 * 8 7 6 33 33 H 1.09001 * 109.46980 * 330.00331 * 8 7 6 34 34 H 1.09004 * 109.47113 * 210.00312 * 8 7 6 35 35 H 1.09001 * 109.46895 * 299.99873 * 15 14 12 36 36 H 1.08999 * 109.47429 * 60.00356 * 15 14 12 37 37 H 1.09001 * 109.47365 * 299.99675 * 16 15 14 38 38 H 1.09002 * 109.47484 * 60.00007 * 16 15 14 39 39 H 0.96998 * 119.99965 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.47494 * 269.97819 * 26 25 11 41 41 H 1.09000 * 109.47552 * 29.97577 * 26 25 11 42 42 H 1.08998 * 109.47296 * 149.97822 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0904 0.5817 0.0005 6 6 3.9130 2.9062 0.0011 7 6 4.2271 3.6663 -1.1110 8 6 4.0520 3.2424 -2.5466 9 7 4.7198 4.8430 -0.6945 10 1 5.0221 5.5614 -1.2720 11 6 4.7249 4.8707 0.6836 12 6 5.1858 5.9848 1.5184 13 8 5.1481 5.8925 2.7303 14 8 5.6515 7.1117 0.9421 15 6 6.0912 8.1731 1.8301 16 6 6.5827 9.3611 1.0007 17 6 7.0385 10.4628 1.9224 18 1 6.9828 10.3293 2.9926 19 6 7.5257 11.6418 1.3992 20 7 7.5931 11.8047 0.0959 21 14 8.0913 13.0073 2.5416 22 1 7.9142 12.5778 3.9520 23 1 9.5249 13.3015 2.2896 24 1 7.2841 14.2283 2.2913 25 6 4.2336 3.6820 1.1378 26 6 4.0643 3.2737 2.5785 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.0600 3.5328 -2.8927 33 1 4.1608 2.1605 -2.6218 34 1 4.8085 3.7275 -3.1635 35 1 5.2590 8.4883 2.4595 36 1 6.9038 7.8080 2.4582 37 1 7.4151 9.0455 0.3717 38 1 5.7705 9.7263 0.3722 39 1 7.9362 12.6340 -0.2722 40 1 4.9731 2.7825 2.9262 41 1 3.8739 4.1579 3.1868 42 1 3.2235 2.5854 2.6647 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021712334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:13 Heat of formation + Delta-G solvation = -152.782814 kcal Electronic energy + Delta-G solvation = -24782.601727 eV Core-core repulsion = 20920.993841 eV Total energy + Delta-G solvation = -3861.607886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.145 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.93874 -40.25024 -39.48469 -36.68477 -36.21505 -33.44359 -33.21499 -32.37184 -31.65987 -30.33236 -28.39589 -27.02847 -25.21497 -24.46229 -22.79070 -21.91253 -20.89946 -20.19197 -19.49607 -18.51856 -17.53761 -16.78341 -16.61456 -16.15427 -16.11827 -15.88409 -15.26538 -15.01511 -14.54037 -14.22748 -13.69483 -13.58112 -13.51574 -13.20591 -13.13705 -13.03277 -12.81609 -12.51025 -12.42570 -12.40671 -12.21330 -11.91293 -11.76915 -11.31329 -11.12189 -10.83731 -10.82989 -10.79051 -10.73947 -10.30003 -9.73818 -9.69785 -9.34854 -9.11365 -8.50391 -8.40652 -6.16069 -4.20341 1.18968 1.84447 1.93031 2.53781 2.80229 3.14816 3.19115 3.24376 3.32296 3.37654 4.34522 4.35665 4.56494 4.59976 4.65885 4.70169 4.92819 4.94151 5.04936 5.13521 5.20988 5.27961 5.37890 5.43772 5.47816 5.53167 5.64347 5.71991 5.88007 5.97731 6.02734 6.05111 6.21612 6.33968 6.53127 6.56633 6.84936 7.07882 7.48213 7.53990 7.57848 7.80544 8.08112 8.18243 8.85300 9.44522 10.95481 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.030937 B = 0.002371 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.846537 B =11805.962453 C =12276.682430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.350 6.350 4 C 0.554 3.446 5 O -0.500 6.500 6 C -0.220 4.220 7 C 0.117 3.883 8 C -0.099 4.099 9 N -0.507 5.507 10 H 0.433 0.567 11 C -0.030 4.030 12 C 0.529 3.471 13 O -0.500 6.500 14 O -0.362 6.362 15 C 0.078 3.922 16 C 0.024 3.976 17 C -0.526 4.526 18 H 0.061 0.939 19 C 0.060 3.940 20 N -0.891 5.891 21 Si 0.900 3.100 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.023 4.023 26 C -0.098 4.098 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.572 -22.105 -5.045 25.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 O -0.267 6.267 4 C 0.397 3.603 5 O -0.387 6.387 6 C -0.228 4.228 7 C -0.007 4.007 8 C -0.156 4.156 9 N -0.102 5.102 10 H 0.273 0.727 11 C -0.140 4.140 12 C 0.374 3.626 13 O -0.389 6.389 14 O -0.278 6.278 15 C 0.006 3.994 16 C -0.013 4.013 17 C -0.564 4.564 18 H 0.079 0.921 19 C -0.142 4.142 20 N -0.529 5.529 21 Si 0.728 3.272 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.030 4.030 26 C -0.155 4.155 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.236 -22.093 -4.843 25.716 hybrid contribution 0.570 1.059 0.322 1.244 sum -11.667 -21.035 -4.522 24.475 Atomic orbital electron populations 1.21810 0.92540 1.02925 1.03706 1.23062 0.95464 0.80307 1.02656 1.86698 1.24100 1.32055 1.83819 1.20172 0.80244 0.88535 0.71377 1.90852 1.60615 1.42385 1.44851 1.18143 1.16540 0.94752 0.93376 1.20582 0.98839 0.85582 0.95667 1.20584 1.03800 1.03042 0.88179 1.41605 1.47302 1.14575 1.06723 0.72653 1.18862 1.16632 0.96667 0.81798 1.19680 0.75106 0.81705 0.86143 1.90843 1.52442 1.81477 1.14151 1.86572 1.73175 1.24871 1.43225 1.23700 0.98427 0.84678 0.92636 1.19186 0.97152 0.89171 0.95756 1.21007 1.43088 0.99233 0.93068 0.92100 1.24991 0.95446 0.98533 0.95235 1.69977 1.45825 1.26317 1.10762 0.86402 0.78379 0.81554 0.80910 1.19532 1.20816 1.20814 1.19480 0.97839 0.90297 0.95415 1.20491 1.02000 1.02883 0.90109 0.90243 0.91340 0.91428 0.91193 0.91138 0.89327 0.89622 0.90042 0.92002 0.92016 0.95394 0.95392 0.92739 0.90558 0.89041 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 37.16 0.38 -0.45 16 2 C 0.06 0.47 6.20 37.16 0.23 0.70 16 3 O -0.35 -3.85 10.23 -40.64 -0.42 -4.27 16 4 C 0.55 7.08 7.13 34.40 0.25 7.32 16 5 O -0.50 -7.38 16.90 -19.29 -0.33 -7.70 16 6 C -0.22 -2.87 6.01 -105.04 -0.63 -3.50 16 7 C 0.12 1.28 7.21 -81.53 -0.59 0.69 16 8 C -0.10 -0.69 10.24 36.01 0.37 -0.32 16 9 N -0.51 -6.01 6.01 -5.62 -0.03 -6.05 16 10 H 0.43 4.28 8.96 -40.82 -0.37 3.91 16 11 C -0.03 -0.45 7.02 -82.43 -0.58 -1.03 16 12 C 0.53 9.47 7.93 34.12 0.27 9.74 16 13 O -0.50 -9.79 14.49 -19.34 -0.28 -10.07 16 14 O -0.36 -7.00 10.23 -40.97 -0.42 -7.42 16 15 C 0.08 1.69 5.42 37.16 0.20 1.89 16 16 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 17 C -0.53 -14.55 9.11 -34.44 -0.31 -14.86 16 18 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 21 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C -0.02 -0.34 6.21 -104.12 -0.65 -0.98 16 26 C -0.10 -1.28 9.63 36.00 0.35 -0.93 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.60 7.93 -51.93 -0.41 0.19 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.28 6.41 -51.93 -0.33 0.95 16 42 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -33.07 370.31 -7.28 -40.35 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.14 Total: -1.68 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -0.96 Total: 0.32 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.70 Total: -31.26 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -1.44 Total: -29.46 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.07 -7.28 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021712334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.432 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds