Wall clock time and date at job start Fri Apr 10 2020 18:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45204 * 109.47590 * 2 1 4 4 C 1.34755 * 117.00338 * 179.97438 * 3 2 1 5 5 O 1.21533 * 120.00225 * 0.02562 * 4 3 2 6 6 C 1.47256 * 120.00321 * 180.02562 * 4 3 2 7 7 C 1.38323 * 126.46029 * 270.02818 * 6 4 3 8 8 C 1.50703 * 125.79899 * 359.97254 * 7 6 4 9 9 N 1.34197 * 108.40155 * 180.23962 * 7 6 4 10 10 H 0.97004 * 125.38100 * 179.73424 * 9 7 6 11 11 C 1.37835 * 109.22759 * 359.56971 * 9 7 6 12 12 C 1.46643 * 125.84788 * 180.15642 * 11 9 7 13 13 O 1.21603 * 119.99909 * 180.32769 * 12 11 9 14 14 O 1.34873 * 120.00309 * 0.32223 * 12 11 9 15 15 C 1.45200 * 117.00022 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46803 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.46884 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00118 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99708 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00259 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99850 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47112 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47377 * 119.99695 * 21 19 17 24 24 H 1.48502 * 109.47239 * 239.99725 * 21 19 17 25 25 C 1.36417 * 108.30274 * 0.42974 * 11 9 7 26 26 C 1.50694 * 126.50418 * 179.76531 * 25 11 9 27 27 H 1.09000 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47017 * 299.99947 * 1 2 3 29 29 H 1.09005 * 109.46956 * 59.99695 * 1 2 3 30 30 H 1.09005 * 109.47017 * 240.00052 * 2 1 3 31 31 H 1.08999 * 109.47277 * 120.00521 * 2 1 3 32 32 H 1.09002 * 109.47152 * 90.00231 * 8 7 6 33 33 H 1.09001 * 109.46980 * 330.00331 * 8 7 6 34 34 H 1.09004 * 109.47113 * 210.00312 * 8 7 6 35 35 H 1.09001 * 109.46895 * 299.99873 * 15 14 12 36 36 H 1.08999 * 109.47429 * 60.00356 * 15 14 12 37 37 H 1.09001 * 109.47365 * 299.99675 * 16 15 14 38 38 H 1.09002 * 109.47484 * 60.00007 * 16 15 14 39 39 H 0.96998 * 119.99965 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.47494 * 269.97819 * 26 25 11 41 41 H 1.09000 * 109.47552 * 29.97577 * 26 25 11 42 42 H 1.08998 * 109.47296 * 149.97822 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0904 0.5817 0.0005 6 6 3.9130 2.9062 0.0011 7 6 4.2271 3.6663 -1.1110 8 6 4.0520 3.2424 -2.5466 9 7 4.7198 4.8430 -0.6945 10 1 5.0221 5.5614 -1.2720 11 6 4.7249 4.8707 0.6836 12 6 5.1858 5.9848 1.5184 13 8 5.1481 5.8925 2.7303 14 8 5.6515 7.1117 0.9421 15 6 6.0912 8.1731 1.8301 16 6 6.5827 9.3611 1.0007 17 6 7.0385 10.4628 1.9224 18 1 6.9828 10.3293 2.9926 19 6 7.5257 11.6418 1.3992 20 7 7.5931 11.8047 0.0959 21 14 8.0913 13.0073 2.5416 22 1 7.9142 12.5778 3.9520 23 1 9.5249 13.3015 2.2896 24 1 7.2841 14.2283 2.2913 25 6 4.2336 3.6820 1.1378 26 6 4.0643 3.2737 2.5785 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.0600 3.5328 -2.8927 33 1 4.1608 2.1605 -2.6218 34 1 4.8085 3.7275 -3.1635 35 1 5.2590 8.4883 2.4595 36 1 6.9038 7.8080 2.4582 37 1 7.4151 9.0455 0.3717 38 1 5.7705 9.7263 0.3722 39 1 7.9362 12.6340 -0.2722 40 1 4.9731 2.7825 2.9262 41 1 3.8739 4.1579 3.1868 42 1 3.2235 2.5854 2.6647 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021712334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:11 Heat of formation + Delta-G solvation = -171.448398 kcal Electronic energy + Delta-G solvation = -24783.411128 eV Core-core repulsion = 20920.993841 eV Total energy + Delta-G solvation = -3862.417286 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.145 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -42.97831 -41.31624 -40.81899 -37.76643 -37.59786 -35.47898 -34.25812 -33.24076 -32.46759 -32.12180 -29.28378 -28.28295 -26.88915 -25.54115 -23.69960 -23.14107 -22.60381 -21.18401 -20.59962 -19.77232 -18.56619 -18.46048 -17.68836 -17.65476 -17.56929 -16.93481 -16.62650 -16.19603 -16.09334 -15.07788 -14.96013 -14.61468 -14.55042 -14.41289 -14.31852 -14.14104 -13.88703 -13.60889 -13.34851 -13.29740 -13.14754 -13.07504 -12.93309 -12.73891 -12.64401 -12.58225 -12.48485 -11.92322 -11.81224 -11.54445 -11.52685 -11.49923 -11.37282 -10.63287 -10.13743 -9.44876 -8.29115 -6.41612 0.02238 0.89021 0.94375 1.40033 1.40721 1.51062 1.57556 1.62364 1.85382 2.08452 2.39199 3.05771 3.52815 3.64139 3.70963 3.87276 4.05229 4.10980 4.12803 4.20761 4.23455 4.33799 4.39333 4.51583 4.64537 4.66611 4.67333 4.82592 4.87507 4.95550 4.96644 5.03516 5.13901 5.20069 5.31305 5.41432 5.44320 5.44377 5.55307 5.71341 6.04680 6.17356 6.60868 6.65395 6.72089 7.28163 8.83534 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.030937 B = 0.002371 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.846537 B =11805.962453 C =12276.682430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.353 6.353 4 C 0.563 3.437 5 O -0.525 6.525 6 C -0.247 4.247 7 C 0.147 3.853 8 C -0.100 4.100 9 N -0.501 5.501 10 H 0.442 0.558 11 C -0.060 4.060 12 C 0.530 3.470 13 O -0.523 6.523 14 O -0.364 6.364 15 C 0.093 3.907 16 C 0.032 3.968 17 C -0.549 4.549 18 H 0.065 0.935 19 C 0.006 3.994 20 N -0.926 5.926 21 Si 0.972 3.028 22 H -0.263 1.263 23 H -0.276 1.276 24 H -0.275 1.275 25 C -0.023 4.023 26 C -0.097 4.097 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.008 0.992 38 H 0.009 0.991 39 H 0.268 0.732 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.392 -22.870 -5.625 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 O -0.269 6.269 4 C 0.406 3.594 5 O -0.414 6.414 6 C -0.254 4.254 7 C 0.021 3.979 8 C -0.157 4.157 9 N -0.097 5.097 10 H 0.284 0.716 11 C -0.168 4.168 12 C 0.376 3.624 13 O -0.413 6.413 14 O -0.281 6.281 15 C 0.020 3.980 16 C -0.005 4.005 17 C -0.587 4.587 18 H 0.083 0.917 19 C -0.193 4.193 20 N -0.565 5.565 21 Si 0.796 3.204 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.031 4.031 26 C -0.154 4.154 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.076 -22.864 -5.426 26.892 hybrid contribution 0.734 1.149 0.409 1.424 sum -12.341 -21.714 -5.017 25.475 Atomic orbital electron populations 1.21838 0.90483 1.04431 1.03680 1.23395 0.97050 0.78869 1.03030 1.86694 1.22980 1.33994 1.83238 1.20046 0.80647 0.87988 0.70709 1.90838 1.61290 1.43045 1.46231 1.18317 1.18027 0.95396 0.93638 1.21246 0.95342 0.84204 0.97124 1.20816 1.05833 1.03467 0.85555 1.41612 1.47116 1.15296 1.05686 0.71598 1.18488 1.19233 0.96078 0.83019 1.20065 0.74416 0.81517 0.86354 1.90824 1.53584 1.81767 1.15150 1.86544 1.73676 1.25149 1.42714 1.23231 0.98428 0.84389 0.91927 1.18986 0.95718 0.90403 0.95428 1.21395 1.43443 1.00215 0.93608 0.91694 1.25940 0.95324 1.01138 0.96866 1.70086 1.46495 1.27282 1.12605 0.85288 0.78008 0.78157 0.78933 1.18673 1.20126 1.20060 1.19721 0.96868 0.90205 0.96279 1.20493 1.02721 1.02630 0.89558 0.87958 0.91675 0.91110 0.90450 0.91235 0.87083 0.89204 0.87826 0.91854 0.91989 0.97376 0.97295 0.92336 0.90341 0.90307 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.29 71.98 0.74 -0.55 16 2 C 0.05 0.71 6.20 71.98 0.45 1.16 16 3 O -0.35 -7.26 10.23 -56.66 -0.58 -7.84 16 4 C 0.56 13.71 7.13 70.19 0.50 14.21 16 5 O -0.52 -15.03 16.90 19.73 0.33 -14.69 16 6 C -0.25 -6.16 6.01 -20.13 -0.12 -6.28 16 7 C 0.15 2.92 7.21 42.22 0.30 3.22 16 8 C -0.10 -1.08 10.24 71.24 0.73 -0.35 16 9 N -0.50 -11.34 6.01 -171.69 -1.03 -12.37 16 10 H 0.44 8.23 8.96 -92.71 -0.83 7.39 16 11 C -0.06 -1.78 7.02 39.97 0.28 -1.50 16 12 C 0.53 19.29 7.93 70.02 0.56 19.84 16 13 O -0.52 -20.91 14.49 19.50 0.28 -20.63 16 14 O -0.36 -14.34 10.23 -57.87 -0.59 -14.94 16 15 C 0.09 4.12 5.42 71.98 0.39 4.51 16 16 C 0.03 1.67 5.35 29.85 0.16 1.83 16 17 C -0.55 -30.69 9.11 25.60 0.23 -30.46 16 18 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 19 C 0.01 0.36 5.46 84.65 0.46 0.82 16 20 N -0.93 -54.48 13.29 21.45 0.28 -54.19 16 21 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 25 C -0.02 -0.66 6.21 -19.54 -0.12 -0.78 16 26 C -0.10 -2.55 9.63 71.23 0.69 -1.86 16 27 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.99 7.93 -2.39 -0.02 0.97 16 34 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.08 2.27 6.41 -2.39 -0.02 2.25 16 42 H 0.08 1.76 8.05 -2.39 -0.02 1.74 16 Total: -1.00 -71.55 370.31 6.18 -65.37 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.21 Total: 10.24 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.25 Total: 3.81 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: -0.75 Total: -66.56 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -0.56 Total: -58.10 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -71.55 6.18 -65.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021712334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.080 kcal (2) G-P(sol) polarization free energy of solvation -71.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds