Wall clock time and date at job start Fri Apr 10 2020 18:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47159 * 77.30920 * 3 2 1 5 5 N 1.46494 * 109.47253 * 179.97438 * 4 3 2 6 6 C 1.46503 * 120.00183 * 270.00201 * 5 4 3 7 7 C 1.50703 * 109.46922 * 269.99755 * 6 5 4 8 8 H 1.08000 * 119.99779 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99865 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00009 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99875 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47234 * 90.00308 * 11 9 7 13 13 H 1.48501 * 109.47047 * 210.00443 * 11 9 7 14 14 H 1.48503 * 109.47229 * 330.00053 * 11 9 7 15 15 C 1.34779 * 120.00028 * 90.00138 * 5 4 3 16 16 O 1.21284 * 119.99970 * 180.02562 * 15 5 4 17 17 C 1.50693 * 120.00009 * 359.97438 * 15 5 4 18 18 N 1.46903 * 109.47333 * 180.02562 * 17 15 5 19 19 C 1.47844 * 110.99878 * 285.31621 * 18 17 15 20 20 C 1.54908 * 104.79656 * 213.63721 * 19 18 17 21 21 C 1.55136 * 101.65155 * 37.06866 * 20 19 18 22 22 C 1.47448 * 111.00004 * 164.47358 * 18 17 15 23 23 H 1.08999 * 109.88093 * 242.66158 * 22 18 17 24 24 C 1.50698 * 109.88909 * 3.68661 * 22 18 17 25 25 O 1.20833 * 119.99744 * 50.26859 * 24 22 18 26 26 O 1.34222 * 119.99938 * 230.26224 * 24 22 18 27 27 H 1.08997 * 109.47765 * 317.30746 * 3 2 1 28 28 H 1.09003 * 109.47243 * 197.30856 * 3 2 1 29 29 H 1.09008 * 109.47101 * 59.99796 * 4 3 2 30 30 H 1.08998 * 109.46917 * 299.99607 * 4 3 2 31 31 H 1.09003 * 109.47013 * 29.99674 * 6 5 4 32 32 H 1.08998 * 109.47458 * 149.99716 * 6 5 4 33 33 H 0.96998 * 119.99839 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.47695 * 300.00321 * 17 15 5 35 35 H 1.09001 * 109.46924 * 60.00560 * 17 15 5 36 36 H 1.09007 * 110.37304 * 332.46469 * 19 18 17 37 37 H 1.09006 * 110.37444 * 94.80389 * 19 18 17 38 38 H 1.09006 * 110.98498 * 278.98042 * 20 19 18 39 39 H 1.08997 * 111.02561 * 155.17926 * 20 19 18 40 40 H 1.09001 * 110.70338 * 205.96784 * 21 20 19 41 41 H 1.08996 * 110.70977 * 82.73670 * 21 20 19 42 42 H 0.96703 * 116.99767 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.3160 -1.4073 5 7 4.5831 -0.3148 -1.4074 6 6 5.3146 0.9236 -1.6864 7 6 5.5655 1.0358 -3.1681 8 1 5.2148 0.2623 -3.8353 9 6 6.2419 2.1265 -3.6721 10 7 6.6685 3.0686 -2.8597 11 14 6.5524 2.2660 -5.5088 12 1 5.4214 2.9846 -6.1489 13 1 7.8118 3.0173 -5.7423 14 1 6.6708 0.9069 -6.0955 15 6 5.2580 -1.4529 -1.1509 16 8 6.4709 -1.4517 -1.1506 17 6 4.5057 -2.7265 -0.8634 18 7 5.4612 -3.8149 -0.6176 19 6 6.0829 -4.2693 -1.8797 20 6 6.3090 -5.7893 -1.6845 21 6 5.0441 -6.1938 -0.8826 22 6 4.7975 -4.9667 0.0202 23 1 5.2250 -5.1408 1.0076 24 6 3.3186 -4.7039 0.1411 25 8 2.6902 -4.3330 -0.8220 26 8 2.6994 -4.8819 1.3186 27 1 2.9718 -0.7545 0.6968 28 1 2.9709 0.9820 0.3058 29 1 2.7544 0.4392 -2.1041 30 1 2.7553 -1.2973 -1.7130 31 1 4.7248 1.7771 -1.3521 32 1 6.2670 0.9102 -1.1566 33 1 7.1447 3.8357 -3.2142 34 1 3.8793 -2.5876 0.0177 35 1 3.8789 -2.9792 -1.7187 36 1 5.4113 -4.0903 -2.7195 37 1 7.0342 -3.7613 -2.0386 38 1 7.2142 -5.9783 -1.1074 39 1 6.3449 -6.3056 -2.6437 40 1 5.2369 -7.0821 -0.2811 41 1 4.1991 -6.3561 -1.5516 42 1 1.7500 -4.7002 1.3473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035302622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:31 Heat of formation + Delta-G solvation = -103.291357 kcal Electronic energy + Delta-G solvation = -26503.527149 eV Core-core repulsion = 22676.358125 eV Total energy + Delta-G solvation = -3827.169024 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.20905 -40.61625 -39.07808 -37.99225 -37.05919 -36.64838 -34.90422 -33.33516 -32.18879 -30.81203 -29.66487 -27.46641 -25.36713 -24.82272 -24.25055 -22.35823 -21.19667 -20.18632 -19.24570 -18.88731 -18.38784 -18.13981 -17.87864 -17.08416 -16.60124 -16.46910 -16.25881 -16.03088 -15.81464 -15.54235 -15.00182 -14.68825 -14.32384 -14.23797 -14.16571 -13.68837 -13.62736 -13.59080 -13.24406 -13.10532 -13.05070 -12.89543 -12.75106 -12.54615 -12.46864 -12.37815 -12.19258 -12.08294 -11.91480 -11.86025 -11.67925 -11.47616 -10.58410 -10.57017 -9.48978 -9.44850 -8.17924 -6.30227 1.00287 1.39242 1.41307 1.50853 1.61747 1.76997 1.87065 2.00184 2.16037 2.42888 2.83147 3.11004 3.14245 3.46970 3.59416 3.80443 3.96791 4.00713 4.08708 4.12529 4.24242 4.33671 4.38170 4.46100 4.50378 4.75775 4.78700 4.88129 4.97150 5.00324 5.08040 5.12518 5.25282 5.32941 5.54092 5.59745 5.67343 5.76209 5.88854 6.13092 6.53226 6.72308 6.80034 6.92794 7.34128 7.52012 8.88834 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.011983 B = 0.004917 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.172375 B = 5692.662143 C = 7404.561709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C 0.244 3.756 3 C -0.037 4.037 4 C 0.115 3.885 5 N -0.599 5.599 6 C 0.262 3.738 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.013 3.987 10 N -0.924 5.924 11 Si 0.958 3.042 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.275 1.275 15 C 0.503 3.497 16 O -0.564 6.564 17 C 0.037 3.963 18 N -0.499 5.499 19 C 0.037 3.963 20 C -0.115 4.115 21 C -0.121 4.121 22 C 0.075 3.925 23 H 0.139 0.861 24 C 0.471 3.529 25 O -0.538 6.538 26 O -0.505 6.505 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.035 0.965 32 H 0.006 0.994 33 H 0.266 0.734 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.071 0.929 42 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.456 -19.023 7.836 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.160 5.160 2 C -0.074 4.074 3 C -0.078 4.078 4 C -0.010 4.010 5 N -0.331 5.331 6 C 0.141 3.859 7 C -0.579 4.579 8 H 0.068 0.932 9 C -0.186 4.186 10 N -0.564 5.564 11 Si 0.783 3.217 12 H -0.193 1.193 13 H -0.208 1.208 14 H -0.200 1.200 15 C 0.291 3.709 16 O -0.442 6.442 17 C -0.094 4.094 18 N -0.225 5.225 19 C -0.090 4.090 20 C -0.153 4.153 21 C -0.159 4.159 22 C -0.034 4.034 23 H 0.156 0.844 24 C 0.313 3.687 25 O -0.428 6.428 26 O -0.318 6.318 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.025 0.975 33 H 0.075 0.925 34 H 0.126 0.874 35 H 0.106 0.894 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.137 0.863 41 H 0.090 0.910 42 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -6.811 -18.619 7.921 21.349 hybrid contribution -0.529 0.739 -1.564 1.809 sum -7.340 -17.880 6.357 20.347 Atomic orbital electron populations 1.81235 1.14116 1.10820 1.09859 1.29079 0.94893 0.91497 0.91888 1.19795 0.80391 1.07657 0.99941 1.21458 0.79511 1.04234 0.95845 1.48082 1.06474 1.10008 1.68569 1.18816 0.91508 0.80989 0.94622 1.21712 1.36575 1.05830 0.93808 0.93214 1.25704 0.95136 0.95381 1.02390 1.70022 1.39076 1.10846 1.36475 0.85559 0.77918 0.78003 0.80190 1.19298 1.20769 1.20000 1.20985 0.87915 0.85415 0.76627 1.90649 1.15798 1.85592 1.52137 1.22608 0.93641 0.89709 1.03414 1.63826 1.27616 1.05731 1.25329 1.23189 0.99388 0.97170 0.89250 1.22711 0.98469 0.92352 1.01777 1.22821 0.98756 0.96438 0.97866 1.22708 0.84954 0.92458 1.03312 0.84369 1.24145 0.91718 0.72592 0.80203 1.90751 1.68068 1.43964 1.40023 1.84540 1.31299 1.80684 1.35237 0.85424 0.85566 0.89515 0.89041 0.94697 0.97538 0.92520 0.87417 0.89380 0.94393 0.91172 0.88914 0.88598 0.86268 0.90981 0.71175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -14.09 18.54 20.00 0.37 -13.71 16 2 C 0.24 5.85 15.43 89.44 1.38 7.23 16 3 C -0.04 -0.77 6.03 28.79 0.17 -0.60 16 4 C 0.11 3.23 5.17 86.38 0.45 3.68 16 5 N -0.60 -23.14 2.46 -826.14 -2.03 -25.16 16 6 C 0.26 13.00 5.16 85.63 0.44 13.44 16 7 C -0.54 -29.83 9.39 25.60 0.24 -29.59 16 8 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 9 C 0.01 0.74 5.46 84.66 0.46 1.20 16 10 N -0.92 -54.02 13.29 21.45 0.28 -53.74 16 11 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 15 C 0.50 19.68 7.52 87.65 0.66 20.34 16 16 O -0.56 -27.52 15.05 -3.04 -0.05 -27.57 16 17 C 0.04 1.07 2.44 85.55 0.21 1.28 16 18 N -0.50 -13.32 4.76 -869.41 -4.14 -17.46 16 19 C 0.04 1.00 5.96 86.77 0.52 1.52 16 20 C -0.12 -1.90 7.08 31.98 0.23 -1.68 16 21 C -0.12 -1.67 6.46 31.77 0.21 -1.46 16 22 C 0.07 1.35 3.87 44.51 0.17 1.52 16 23 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 24 C 0.47 8.61 5.39 71.24 0.38 8.99 16 25 O -0.54 -12.78 14.53 21.94 0.32 -12.46 16 26 O -0.51 -6.39 13.42 -51.34 -0.69 -7.08 16 27 H 0.13 2.13 7.22 -2.39 -0.02 2.11 16 28 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.09 2.61 8.07 -2.38 -0.02 2.59 16 30 H 0.09 2.33 6.44 -2.39 -0.02 2.31 16 31 H 0.04 1.71 8.07 -2.39 -0.02 1.69 16 32 H 0.01 0.38 7.42 -2.39 -0.02 0.36 16 33 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 34 H 0.11 2.59 5.55 -2.39 -0.01 2.58 16 35 H 0.09 2.62 5.33 -2.39 -0.01 2.61 16 36 H 0.04 1.08 7.53 -2.38 -0.02 1.07 16 37 H 0.07 2.30 7.67 -2.38 -0.02 2.28 16 38 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 1.10 7.76 -2.39 -0.02 1.08 16 42 H 0.43 2.29 9.10 -74.06 -0.67 1.61 16 Total: -1.00 -77.07 355.26 2.00 -75.07 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.39 Total: 10.04 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 5.52 Total: 25.87 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -5.51 Total: -110.07 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -0.42 Total: -47.10 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -77.07 2.00 -75.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035302622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.220 kcal (2) G-P(sol) polarization free energy of solvation -77.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds