Wall clock time and date at job start Fri Apr 10 2020 17:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47164 * 2 1 4 4 C 1.50704 * 109.46827 * 119.99160 * 2 1 3 5 5 H 1.08000 * 119.99525 * 119.99771 * 4 2 1 6 6 C 1.37875 * 120.00086 * 300.00279 * 4 2 1 7 7 N 1.31507 * 120.00282 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99921 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47281 * 59.99780 * 8 6 4 10 10 H 1.48499 * 109.47451 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.47000 * 300.00055 * 8 6 4 12 12 N 1.46503 * 109.47325 * 239.99211 * 2 1 3 13 13 C 1.34769 * 119.99602 * 85.00504 * 12 2 1 14 14 O 1.21598 * 120.00443 * 359.97438 * 13 12 2 15 15 C 1.47527 * 119.99978 * 179.97438 * 13 12 2 16 16 C 1.36591 * 125.77604 * 179.97438 * 15 13 12 17 17 N 1.34814 * 106.84525 * 180.02562 * 16 15 13 18 18 C 1.46496 * 126.59767 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.46918 * 124.99853 * 18 17 16 20 20 H 1.09005 * 110.46478 * 56.18136 * 19 18 17 21 21 C 1.54094 * 110.45894 * 178.99354 * 19 18 17 22 22 N 1.47095 * 103.77641 * 118.92691 * 21 19 18 23 23 C 1.34005 * 108.87740 * 359.66060 * 22 21 19 24 24 O 1.21517 * 123.07084 * 180.20498 * 23 22 21 25 25 O 1.33772 * 113.86188 * 0.23087 * 23 22 21 26 26 N 1.40212 * 106.80773 * 0.22817 * 17 16 15 27 27 N 1.28768 * 108.36894 * 359.61331 * 26 17 16 28 28 H 1.09002 * 109.47164 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47384 * 300.00531 * 1 2 3 30 30 H 1.09003 * 109.46884 * 60.00795 * 1 2 3 31 31 H 0.96996 * 120.00603 * 179.97438 * 7 6 4 32 32 H 0.97000 * 119.99798 * 264.99800 * 12 2 1 33 33 H 1.08003 * 126.57573 * 0.04055 * 16 15 13 34 34 H 1.09002 * 109.47183 * 5.00074 * 18 17 16 35 35 H 1.08996 * 109.47242 * 245.00126 * 18 17 16 36 36 H 1.09007 * 110.65829 * 0.31020 * 21 19 18 37 37 H 1.08996 * 110.47334 * 237.45303 * 21 19 18 38 38 H 0.97001 * 125.56314 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9434 0.8304 2.6033 8 14 2.3223 -1.1191 4.0081 9 1 3.8073 -1.1185 4.0080 10 1 1.8267 -0.4194 5.2206 11 1 1.8278 -2.5194 4.0085 12 7 2.0184 -0.6908 -1.1961 13 6 2.1472 -0.0185 -2.3570 14 8 1.8576 1.1612 -2.4119 15 6 2.6395 -0.7139 -3.5614 16 6 2.8143 -0.1506 -4.7933 17 7 3.2755 -1.1227 -5.6056 18 6 3.6093 -0.9890 -7.0257 19 6 5.0478 -1.4555 -7.2576 20 1 5.1793 -2.4772 -6.9011 21 6 5.4149 -1.3480 -8.7503 22 7 6.5387 -0.3991 -8.7672 23 6 6.7917 -0.0042 -7.5119 24 8 7.6710 0.7856 -7.2296 25 8 5.9881 -0.5593 -6.5977 26 7 3.3688 -2.2878 -4.8311 27 7 2.9913 -2.0092 -3.6319 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 0.7087 1.1618 3.4842 32 1 2.2491 -1.6319 -1.1523 33 1 2.6205 0.8767 -5.0646 34 1 3.5131 0.0548 -7.3249 35 1 2.9289 -1.6008 -7.6180 36 1 4.5754 -0.9575 -9.3257 37 1 5.7272 -2.3181 -9.1370 38 1 7.0157 -0.1035 -9.5584 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433673695.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:36 Heat of formation + Delta-G solvation = -5.144939 kcal Electronic energy + Delta-G solvation = -24685.081119 eV Core-core repulsion = 20758.627700 eV Total energy + Delta-G solvation = -3926.453419 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.127 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.38397 -41.88776 -38.55064 -37.85888 -35.38198 -35.09032 -34.75976 -32.32362 -31.46275 -30.61763 -28.69388 -26.89665 -25.19246 -23.82487 -23.47484 -22.95261 -21.94870 -20.92544 -19.51840 -18.67433 -18.38829 -17.51555 -17.11115 -16.58735 -16.00768 -15.55991 -15.35531 -15.28555 -14.94371 -14.64840 -14.41505 -14.25047 -14.19332 -13.68395 -13.23544 -13.14134 -12.88083 -12.34675 -12.11702 -11.65347 -11.48279 -11.21456 -11.15446 -11.02496 -10.89857 -10.70024 -10.45716 -10.28416 -10.16416 -10.03792 -9.28652 -9.17308 -8.98566 -8.48675 -7.85992 -6.05765 -4.14263 1.13025 1.72914 2.01124 2.14360 2.22640 2.81046 3.26798 3.32838 3.36935 3.39413 3.54824 3.87588 3.93657 4.02868 4.26485 4.34975 4.37290 4.42801 4.45106 4.71396 4.84729 4.97601 5.24577 5.27205 5.30173 6.01998 6.16608 6.22389 6.68461 6.88280 7.02154 7.19711 7.47559 7.55681 7.60415 7.75545 7.93589 8.03724 8.20140 8.72325 8.82793 9.12638 9.52597 11.00417 Molecular weight = 309.13amu Principal moments of inertia in cm(-1) A = 0.024824 B = 0.002625 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.666207 B =10664.891172 C =10974.797109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.688 5.688 13 C 0.586 3.414 14 O -0.553 6.553 15 C -0.082 4.082 16 C 0.093 3.907 17 N -0.371 5.371 18 C 0.120 3.880 19 C 0.054 3.946 20 H 0.135 0.865 21 C 0.075 3.925 22 N -0.737 5.737 23 C 0.642 3.358 24 O -0.515 6.515 25 O -0.314 6.314 26 N -0.073 5.073 27 N -0.196 5.196 28 H 0.027 0.973 29 H 0.091 0.909 30 H 0.015 0.985 31 H 0.264 0.736 32 H 0.397 0.603 33 H 0.203 0.797 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.013 -6.191 -28.006 29.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.571 4.571 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.335 5.335 13 C 0.367 3.633 14 O -0.432 6.432 15 C -0.221 4.221 16 C -0.062 4.062 17 N -0.157 5.157 18 C -0.002 4.002 19 C -0.003 4.003 20 H 0.153 0.847 21 C -0.051 4.051 22 N -0.412 5.412 23 C 0.395 3.605 24 O -0.398 6.398 25 O -0.223 6.223 26 N -0.053 5.053 27 N -0.070 5.070 28 H 0.047 0.953 29 H 0.110 0.890 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.231 0.769 33 H 0.220 0.780 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 5.454 -6.297 -27.282 28.526 hybrid contribution 0.321 0.166 0.139 0.387 sum 5.775 -6.131 -27.143 28.420 Atomic orbital electron populations 1.22084 0.98257 0.99275 1.00956 1.18825 0.91154 0.94044 0.79737 0.93098 1.21201 1.32408 1.13277 0.90225 0.91930 1.24871 0.94815 0.94960 0.99014 1.69886 1.35969 1.22464 1.23957 0.86492 0.79235 0.79593 0.81692 1.20134 1.21188 1.20128 1.46400 1.63210 1.14089 1.09758 1.16827 0.78666 0.85892 0.81869 1.90764 1.52714 1.14965 1.84754 1.21961 1.12488 0.91062 0.96606 1.23344 0.96390 0.96313 0.90188 1.50153 1.46173 1.09162 1.10201 1.22294 0.94700 1.05493 0.77716 1.24283 0.88228 0.96202 0.91602 0.84707 1.22765 0.91143 0.95938 0.95232 1.45969 1.37567 1.48594 1.09042 1.18632 0.81446 0.80210 0.80262 1.91126 1.31701 1.35209 1.81800 1.87486 1.44968 1.56998 1.32896 1.81877 1.22693 1.04194 0.96519 1.74642 1.07813 1.13579 1.10967 0.95337 0.89015 0.96578 0.92555 0.76917 0.78007 0.86714 0.85776 0.88186 0.87759 0.71839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.26 37.16 0.34 -3.39 16 2 C 0.26 6.95 2.56 -69.08 -0.18 6.77 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.12 16 4 C -0.53 -14.64 8.73 -34.44 -0.30 -14.94 16 5 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -25.34 11.32 55.43 0.63 -24.71 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 12 N -0.69 -15.59 5.07 -55.98 -0.28 -15.87 16 13 C 0.59 12.52 7.78 -12.48 -0.10 12.42 16 14 O -0.55 -13.26 16.53 5.28 0.09 -13.17 16 15 C -0.08 -1.41 6.99 -83.55 -0.58 -1.99 16 16 C 0.09 1.19 11.27 -16.84 -0.19 1.00 16 17 N -0.37 -3.83 3.68 -61.07 -0.22 -4.05 16 18 C 0.12 0.51 6.08 -4.04 -0.02 0.48 16 19 C 0.05 0.25 4.00 -26.16 -0.10 0.15 16 20 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 21 C 0.07 0.07 7.71 -3.15 -0.02 0.05 16 22 N -0.74 -3.20 6.40 -64.72 -0.41 -3.61 16 23 C 0.64 6.52 9.16 53.71 0.49 7.01 16 24 O -0.51 -7.77 18.04 -19.12 -0.34 -8.11 16 25 O -0.31 -3.23 10.78 -37.83 -0.41 -3.64 16 26 N -0.07 -1.00 13.65 60.35 0.82 -0.18 16 27 N -0.20 -3.30 12.04 32.85 0.40 -2.90 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.40 8.36 8.23 -40.82 -0.34 8.02 16 33 H 0.20 2.03 8.06 -52.48 -0.42 1.60 16 34 H 0.11 0.27 8.08 -51.93 -0.42 -0.15 16 35 H 0.12 0.09 8.14 -51.93 -0.42 -0.33 16 36 H 0.10 -0.19 7.73 -51.92 -0.40 -0.59 16 37 H 0.10 -0.11 8.14 -51.93 -0.42 -0.54 16 38 H 0.44 0.99 8.96 -40.82 -0.37 0.63 16 LS Contribution 338.67 15.07 5.10 5.10 Total: -1.00 -38.77 338.67 -4.73 -43.49 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.31 Total: 2.14 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -0.76 Total: 9.29 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.92 Total: -51.33 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.67 Total: -24.92 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -38.77 -4.73 -43.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433673695.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.349 kcal (2) G-P(sol) polarization free energy of solvation -38.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds