Wall clock time and date at job start Fri Apr 10 2020 17:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47164 * 2 1 4 4 C 1.50704 * 109.46827 * 119.99160 * 2 1 3 5 5 H 1.08000 * 119.99525 * 119.99771 * 4 2 1 6 6 C 1.37875 * 120.00086 * 300.00279 * 4 2 1 7 7 N 1.31507 * 120.00282 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99921 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47281 * 59.99780 * 8 6 4 10 10 H 1.48499 * 109.47451 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.47000 * 300.00055 * 8 6 4 12 12 N 1.46503 * 109.47325 * 239.99211 * 2 1 3 13 13 C 1.34769 * 119.99602 * 85.00504 * 12 2 1 14 14 O 1.21598 * 120.00443 * 359.97438 * 13 12 2 15 15 C 1.47527 * 119.99978 * 179.97438 * 13 12 2 16 16 C 1.36591 * 125.77604 * 179.97438 * 15 13 12 17 17 N 1.34814 * 106.84525 * 180.02562 * 16 15 13 18 18 C 1.46496 * 126.59767 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.46918 * 124.99853 * 18 17 16 20 20 H 1.09005 * 110.46478 * 56.18136 * 19 18 17 21 21 C 1.54094 * 110.45894 * 178.99354 * 19 18 17 22 22 N 1.47095 * 103.77641 * 118.92691 * 21 19 18 23 23 C 1.34005 * 108.87740 * 359.66060 * 22 21 19 24 24 O 1.21517 * 123.07084 * 180.20498 * 23 22 21 25 25 O 1.33772 * 113.86188 * 0.23087 * 23 22 21 26 26 N 1.40212 * 106.80773 * 0.22817 * 17 16 15 27 27 N 1.28768 * 108.36894 * 359.61331 * 26 17 16 28 28 H 1.09002 * 109.47164 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47384 * 300.00531 * 1 2 3 30 30 H 1.09003 * 109.46884 * 60.00795 * 1 2 3 31 31 H 0.96996 * 120.00603 * 179.97438 * 7 6 4 32 32 H 0.97000 * 119.99798 * 264.99800 * 12 2 1 33 33 H 1.08003 * 126.57573 * 0.04055 * 16 15 13 34 34 H 1.09002 * 109.47183 * 5.00074 * 18 17 16 35 35 H 1.08996 * 109.47242 * 245.00126 * 18 17 16 36 36 H 1.09007 * 110.65829 * 0.31020 * 21 19 18 37 37 H 1.08996 * 110.47334 * 237.45303 * 21 19 18 38 38 H 0.97001 * 125.56314 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9434 0.8304 2.6033 8 14 2.3223 -1.1191 4.0081 9 1 3.8073 -1.1185 4.0080 10 1 1.8267 -0.4194 5.2206 11 1 1.8278 -2.5194 4.0085 12 7 2.0184 -0.6908 -1.1961 13 6 2.1472 -0.0185 -2.3570 14 8 1.8576 1.1612 -2.4119 15 6 2.6395 -0.7139 -3.5614 16 6 2.8143 -0.1506 -4.7933 17 7 3.2755 -1.1227 -5.6056 18 6 3.6093 -0.9890 -7.0257 19 6 5.0478 -1.4555 -7.2576 20 1 5.1793 -2.4772 -6.9011 21 6 5.4149 -1.3480 -8.7503 22 7 6.5387 -0.3991 -8.7672 23 6 6.7917 -0.0042 -7.5119 24 8 7.6710 0.7856 -7.2296 25 8 5.9881 -0.5593 -6.5977 26 7 3.3688 -2.2878 -4.8311 27 7 2.9913 -2.0092 -3.6319 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 0.7087 1.1618 3.4842 32 1 2.2491 -1.6319 -1.1523 33 1 2.6205 0.8767 -5.0646 34 1 3.5131 0.0548 -7.3249 35 1 2.9289 -1.6008 -7.6180 36 1 4.5754 -0.9575 -9.3257 37 1 5.7272 -2.3181 -9.1370 38 1 7.0157 -0.1035 -9.5584 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433673695.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:35 Heat of formation + Delta-G solvation = -39.707394 kcal Electronic energy + Delta-G solvation = -24686.579859 eV Core-core repulsion = 20758.627700 eV Total energy + Delta-G solvation = -3927.952160 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.127 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.28837 -42.61779 -40.27734 -38.64758 -36.73379 -35.99103 -35.76165 -34.30187 -32.34885 -31.79537 -30.42525 -27.44698 -27.31364 -25.03023 -24.22116 -23.62489 -22.77620 -22.57529 -21.16277 -19.73873 -19.13262 -18.44504 -17.92349 -17.67755 -17.19496 -17.08615 -16.88788 -16.21753 -15.98958 -15.71054 -15.54046 -15.39497 -14.89473 -14.73682 -14.42798 -14.36411 -13.85261 -13.64839 -13.34522 -13.15646 -13.00866 -12.86103 -12.73268 -12.39180 -12.26139 -12.15271 -12.08565 -11.92695 -11.32928 -11.12214 -11.04174 -10.58878 -10.40881 -10.34004 -9.74660 -8.16965 -6.33989 0.12897 0.68040 1.00351 1.45303 1.47849 1.53656 1.55554 1.65426 2.31306 2.37700 2.47225 2.56465 2.93197 3.13086 3.23495 3.27402 3.55223 3.80678 3.93803 4.00570 4.14415 4.29136 4.42044 4.62597 4.66112 4.73851 4.82478 4.94790 5.09268 5.39268 5.42970 5.58872 5.68433 5.77787 5.88823 6.09786 6.15252 6.71351 6.75187 6.98463 7.01383 7.29025 7.45035 8.89346 Molecular weight = 309.13amu Principal moments of inertia in cm(-1) A = 0.024824 B = 0.002625 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.666207 B =10664.891172 C =10974.797109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.270 3.730 3 H 0.006 0.994 4 C -0.552 4.552 5 H 0.067 0.933 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.265 1.265 12 N -0.692 5.692 13 C 0.586 3.414 14 O -0.587 6.587 15 C -0.118 4.118 16 C 0.113 3.887 17 N -0.349 5.349 18 C 0.105 3.895 19 C 0.044 3.956 20 H 0.135 0.865 21 C 0.083 3.917 22 N -0.715 5.715 23 C 0.636 3.364 24 O -0.583 6.583 25 O -0.351 6.351 26 N -0.072 5.072 27 N -0.225 5.225 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.018 0.982 31 H 0.267 0.733 32 H 0.405 0.595 33 H 0.231 0.769 34 H 0.142 0.858 35 H 0.174 0.826 36 H 0.144 0.856 37 H 0.136 0.864 38 H 0.449 0.551 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.840 -7.951 -30.954 32.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.167 3.833 3 H 0.024 0.976 4 C -0.590 4.590 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.189 1.189 12 N -0.339 5.339 13 C 0.371 3.629 14 O -0.468 6.468 15 C -0.257 4.257 16 C -0.044 4.044 17 N -0.134 5.134 18 C -0.014 4.014 19 C -0.012 4.012 20 H 0.152 0.848 21 C -0.040 4.040 22 N -0.389 5.389 23 C 0.389 3.611 24 O -0.471 6.471 25 O -0.261 6.261 26 N -0.053 5.053 27 N -0.099 5.099 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.239 0.761 33 H 0.247 0.753 34 H 0.160 0.840 35 H 0.191 0.809 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 5.267 -8.130 -30.330 31.840 hybrid contribution 0.373 0.681 0.838 1.142 sum 5.641 -7.449 -29.493 30.938 Atomic orbital electron populations 1.21895 0.97749 0.99525 0.99996 1.18454 0.91513 0.92026 0.81275 0.97607 1.21497 1.32839 1.13630 0.91001 0.91437 1.25755 0.94807 0.95593 1.02116 1.70021 1.36780 1.23695 1.24777 0.85403 0.78564 0.78762 0.77642 1.19842 1.20695 1.18942 1.46188 1.63927 1.14332 1.09490 1.17285 0.77491 0.85572 0.82560 1.90725 1.54091 1.16463 1.85522 1.21416 1.15972 0.91951 0.96410 1.23665 0.94377 0.97448 0.88935 1.50518 1.43613 1.07298 1.11954 1.23107 0.95314 1.08579 0.74409 1.24654 0.87361 0.95188 0.93964 0.84783 1.23141 0.91219 0.96906 0.92759 1.45931 1.37846 1.47861 1.07297 1.18851 0.80883 0.79800 0.81566 1.91061 1.34585 1.38363 1.83121 1.87435 1.46044 1.57910 1.34680 1.81740 1.22088 1.05503 0.95951 1.74611 1.09014 1.13624 1.12610 0.94304 0.91045 0.96330 0.92378 0.76054 0.75259 0.83970 0.80868 0.83785 0.84662 0.70545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.97 9.26 71.98 0.67 -6.30 16 2 C 0.27 14.81 2.56 44.25 0.11 14.93 16 3 H 0.01 0.38 7.58 -2.39 -0.02 0.36 16 4 C -0.55 -30.96 8.73 25.60 0.22 -30.74 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.91 -53.55 11.32 21.45 0.24 -53.30 16 8 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 12 N -0.69 -32.48 5.07 -449.27 -2.28 -34.76 16 13 C 0.59 25.82 7.78 86.69 0.67 26.49 16 14 O -0.59 -29.11 16.53 -4.02 -0.07 -29.18 16 15 C -0.12 -4.05 6.99 40.82 0.29 -3.77 16 16 C 0.11 2.69 11.27 83.85 0.95 3.63 16 17 N -0.35 -6.16 3.68 -347.11 -1.28 -7.44 16 18 C 0.10 0.37 6.08 86.38 0.53 0.90 16 19 C 0.04 0.25 4.00 30.96 0.12 0.37 16 20 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 21 C 0.08 -0.28 7.71 86.64 0.67 0.38 16 22 N -0.72 -4.03 6.40 -590.39 -3.78 -7.81 16 23 C 0.64 12.39 9.16 129.91 1.19 13.58 16 24 O -0.58 -18.23 18.04 19.63 0.35 -17.88 16 25 O -0.35 -6.77 10.78 -47.32 -0.51 -7.28 16 26 N -0.07 -1.86 13.65 37.02 0.51 -1.36 16 27 N -0.22 -7.47 12.04 -49.99 -0.60 -8.08 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 4.03 6.07 -2.39 -0.01 4.02 16 30 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.40 17.57 8.23 -92.71 -0.76 16.80 16 33 H 0.23 4.03 8.06 -2.91 -0.02 4.00 16 34 H 0.14 -0.13 8.08 -2.39 -0.02 -0.15 16 35 H 0.17 -0.94 8.14 -2.39 -0.02 -0.95 16 36 H 0.14 -1.61 7.73 -2.38 -0.02 -1.63 16 37 H 0.14 -1.12 8.14 -2.39 -0.02 -1.14 16 38 H 0.45 0.73 8.96 -92.71 -0.83 -0.11 16 Total: -1.00 -91.87 338.67 0.03 -91.85 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -0.46 Total: 8.55 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 5.86 Total: 20.92 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -7.18 Total: -112.74 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -0.22 Total: -54.34 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -91.87 0.03 -91.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433673695.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.138 kcal (2) G-P(sol) polarization free energy of solvation -91.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds