Wall clock time and date at job start Fri Apr 10 2020 17:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21592 * 119.99951 * 0.02562 * 13 12 2 15 15 C 1.47516 * 120.00037 * 180.02562 * 13 12 2 16 16 C 1.36596 * 125.77080 * 179.71633 * 15 13 12 17 17 N 1.34820 * 106.83862 * 179.89601 * 16 15 13 18 18 C 1.46506 * 126.59082 * 180.13305 * 17 16 15 19 19 C 1.53000 * 109.46931 * 125.24950 * 18 17 16 20 20 H 1.09003 * 110.46372 * 303.81564 * 19 18 17 21 21 C 1.54087 * 110.51738 * 181.03923 * 19 18 17 22 22 N 1.47097 * 103.77538 * 241.36503 * 21 19 18 23 23 C 1.34007 * 108.88174 * 0.02562 * 22 21 19 24 24 O 1.21507 * 123.07241 * 180.02562 * 23 22 21 25 25 O 1.33769 * 113.85562 * 359.97438 * 23 22 21 26 26 N 1.40202 * 106.80923 * 0.35781 * 17 16 15 27 27 N 1.28757 * 108.37096 * 359.77362 * 26 17 16 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 32 32 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 33 33 H 1.08001 * 126.58365 * 0.04097 * 16 15 13 34 34 H 1.09005 * 109.46884 * 245.24666 * 18 17 16 35 35 H 1.08996 * 109.47227 * 5.24220 * 18 17 16 36 36 H 1.08997 * 110.57028 * 359.94124 * 21 19 18 37 37 H 1.09000 * 110.56460 * 122.79664 * 21 19 18 38 38 H 0.97003 * 125.56030 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1617 -2.4116 15 6 2.6383 -0.7136 -3.5618 16 6 2.8081 -0.1513 -4.7950 17 7 3.2728 -1.1224 -5.6065 18 6 3.6065 -0.9884 -7.0267 19 6 5.0447 -1.4560 -7.2590 20 1 5.7336 -0.9001 -6.6229 21 6 5.4301 -1.3009 -8.7428 22 7 5.7262 -2.6759 -9.1734 23 6 5.5491 -3.5034 -8.1343 24 8 5.7245 -4.7036 -8.2051 25 8 5.1624 -2.8871 -7.0118 26 7 3.3705 -2.2864 -4.8311 27 7 2.9889 -2.0091 -3.6330 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 0.7096 1.1617 3.4844 32 1 2.2491 -1.6316 -1.1527 33 1 2.6104 0.8750 -5.0672 34 1 2.9256 -1.5996 -7.6191 35 1 3.5111 0.0555 -7.3254 36 1 4.5968 -0.8918 -9.3141 37 1 6.3125 -0.6692 -8.8452 38 1 6.0044 -2.9405 -10.0642 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433673699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:41 Heat of formation + Delta-G solvation = -3.642124 kcal Electronic energy + Delta-G solvation = -24620.834813 eV Core-core repulsion = 20694.446561 eV Total energy + Delta-G solvation = -3926.388252 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.127 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.33968 -41.85287 -38.56837 -37.80123 -35.31880 -35.07749 -34.77728 -32.33785 -31.40226 -30.62843 -28.70797 -26.87626 -25.20509 -23.80859 -23.43306 -22.85935 -21.93416 -20.92062 -19.51710 -18.78401 -18.37113 -17.33822 -17.09210 -16.59792 -16.00983 -15.57067 -15.37987 -15.15709 -14.95096 -14.65875 -14.40927 -14.25017 -14.00413 -13.81289 -13.16442 -13.15014 -12.85140 -12.35542 -12.00548 -11.66470 -11.43063 -11.16894 -11.10780 -11.03062 -10.91062 -10.71265 -10.44897 -10.29519 -10.17647 -10.00329 -9.30469 -9.16764 -9.00030 -8.50107 -7.87822 -6.07362 -4.15781 1.13760 1.75205 2.03264 2.19484 2.29271 2.87363 3.30292 3.31962 3.35967 3.38677 3.51224 3.85477 3.92218 4.03901 4.21727 4.34409 4.38891 4.43389 4.45502 4.73077 4.87356 4.95860 5.23966 5.26583 5.29215 6.01657 6.20751 6.23499 6.75976 6.86956 7.01051 7.18264 7.45456 7.59162 7.61672 7.74502 7.93482 8.07321 8.18575 8.70866 8.81134 9.10648 9.51144 10.98752 Molecular weight = 309.13amu Principal moments of inertia in cm(-1) A = 0.027790 B = 0.002547 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.325056 B =10991.456124 C =11671.537801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.688 5.688 13 C 0.586 3.414 14 O -0.555 6.555 15 C -0.083 4.083 16 C 0.080 3.920 17 N -0.376 5.376 18 C 0.119 3.881 19 C 0.055 3.945 20 H 0.127 0.873 21 C 0.075 3.925 22 N -0.739 5.739 23 C 0.641 3.359 24 O -0.516 6.516 25 O -0.297 6.297 26 N -0.046 5.046 27 N -0.203 5.203 28 H 0.091 0.909 29 H 0.028 0.972 30 H 0.015 0.985 31 H 0.264 0.736 32 H 0.398 0.602 33 H 0.205 0.795 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.618 0.847 -26.689 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.571 4.571 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.334 5.334 13 C 0.368 3.632 14 O -0.434 6.434 15 C -0.221 4.221 16 C -0.075 4.075 17 N -0.163 5.163 18 C -0.003 4.003 19 C -0.003 4.003 20 H 0.144 0.856 21 C -0.051 4.051 22 N -0.414 5.414 23 C 0.393 3.607 24 O -0.400 6.400 25 O -0.206 6.206 26 N -0.026 5.026 27 N -0.078 5.078 28 H 0.110 0.890 29 H 0.047 0.953 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.232 0.768 33 H 0.221 0.779 34 H 0.125 0.875 35 H 0.149 0.851 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 7.670 -0.349 -26.150 27.254 hybrid contribution 0.297 0.241 0.146 0.410 sum 7.967 -0.107 -26.004 27.197 Atomic orbital electron populations 1.22088 0.98256 0.99323 1.00948 1.18821 0.91166 0.93994 0.79744 0.93117 1.21204 1.32418 1.13281 0.90222 0.91917 1.24871 0.94803 0.94962 0.99014 1.69890 1.35965 1.22481 1.23946 0.86493 0.79201 0.79659 0.81671 1.20152 1.21188 1.20096 1.46422 1.63082 1.14148 1.09776 1.16835 0.78651 0.85883 0.81876 1.90754 1.52874 1.14991 1.84811 1.21992 1.12389 0.91169 0.96585 1.23360 0.97514 0.96406 0.90217 1.50280 1.46478 1.09310 1.10192 1.22294 0.95390 1.04943 0.77686 1.24167 0.97968 0.81033 0.97112 0.85564 1.22740 1.03689 0.85585 0.93037 1.45999 1.73797 1.07207 1.14375 1.18694 0.76468 0.86016 0.79488 1.91109 1.55456 1.10803 1.82600 1.87598 1.80896 1.20145 1.31980 1.82218 1.20864 1.03529 0.95988 1.74725 1.08161 1.13350 1.11536 0.89008 0.95315 0.96579 0.92563 0.76849 0.77876 0.87451 0.85132 0.88262 0.87903 0.71965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 2 C 0.26 6.88 2.56 -69.08 -0.18 6.70 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.53 -14.52 8.73 -34.44 -0.30 -14.82 16 5 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.69 -15.41 5.07 -55.98 -0.28 -15.69 16 13 C 0.59 12.17 7.78 -12.48 -0.10 12.07 16 14 O -0.56 -12.82 16.53 5.28 0.09 -12.73 16 15 C -0.08 -1.38 6.99 -83.55 -0.58 -1.97 16 16 C 0.08 0.93 11.27 -16.83 -0.19 0.74 16 17 N -0.38 -3.84 3.69 -61.05 -0.23 -4.07 16 18 C 0.12 0.49 6.10 -4.04 -0.02 0.46 16 19 C 0.05 0.24 4.07 -26.16 -0.11 0.14 16 20 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 21 C 0.08 0.06 7.71 -3.15 -0.02 0.04 16 22 N -0.74 -3.26 6.40 -64.73 -0.41 -3.68 16 23 C 0.64 6.55 9.16 53.71 0.49 7.04 16 24 O -0.52 -7.78 18.04 -19.11 -0.34 -8.12 16 25 O -0.30 -3.08 10.04 -37.83 -0.38 -3.46 16 26 N -0.05 -0.70 12.95 60.35 0.78 0.08 16 27 N -0.20 -3.53 12.04 32.84 0.40 -3.13 16 28 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.40 8.38 8.23 -40.82 -0.34 8.05 16 33 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.13 -0.08 8.08 -51.93 -0.42 -0.50 16 36 H 0.10 -0.19 7.73 -51.93 -0.40 -0.59 16 37 H 0.10 -0.12 8.14 -51.93 -0.42 -0.55 16 38 H 0.44 1.03 8.96 -40.82 -0.37 0.67 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -39.00 337.33 -4.76 -43.77 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -4.31 Total: 1.58 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -0.76 Total: 8.74 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.88 Total: -50.95 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.64 Total: -24.31 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -39.00 -4.76 -43.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433673699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.127 kcal (2) G-P(sol) polarization free energy of solvation -39.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds