Wall clock time and date at job start Fri Apr 10 2020 17:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21592 * 119.99951 * 0.02562 * 13 12 2 15 15 C 1.47516 * 120.00037 * 180.02562 * 13 12 2 16 16 C 1.36596 * 125.77080 * 179.71633 * 15 13 12 17 17 N 1.34820 * 106.83862 * 179.89601 * 16 15 13 18 18 C 1.46506 * 126.59082 * 180.13305 * 17 16 15 19 19 C 1.53000 * 109.46931 * 125.24950 * 18 17 16 20 20 H 1.09003 * 110.46372 * 303.81564 * 19 18 17 21 21 C 1.54087 * 110.51738 * 181.03923 * 19 18 17 22 22 N 1.47097 * 103.77538 * 241.36503 * 21 19 18 23 23 C 1.34007 * 108.88174 * 0.02562 * 22 21 19 24 24 O 1.21507 * 123.07241 * 180.02562 * 23 22 21 25 25 O 1.33769 * 113.85562 * 359.97438 * 23 22 21 26 26 N 1.40202 * 106.80923 * 0.35781 * 17 16 15 27 27 N 1.28757 * 108.37096 * 359.77362 * 26 17 16 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 32 32 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 33 33 H 1.08001 * 126.58365 * 0.04097 * 16 15 13 34 34 H 1.09005 * 109.46884 * 245.24666 * 18 17 16 35 35 H 1.08996 * 109.47227 * 5.24220 * 18 17 16 36 36 H 1.08997 * 110.57028 * 359.94124 * 21 19 18 37 37 H 1.09000 * 110.56460 * 122.79664 * 21 19 18 38 38 H 0.97003 * 125.56030 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1617 -2.4116 15 6 2.6383 -0.7136 -3.5618 16 6 2.8081 -0.1513 -4.7950 17 7 3.2728 -1.1224 -5.6065 18 6 3.6065 -0.9884 -7.0267 19 6 5.0447 -1.4560 -7.2590 20 1 5.7336 -0.9001 -6.6229 21 6 5.4301 -1.3009 -8.7428 22 7 5.7262 -2.6759 -9.1734 23 6 5.5491 -3.5034 -8.1343 24 8 5.7245 -4.7036 -8.2051 25 8 5.1624 -2.8871 -7.0118 26 7 3.3705 -2.2864 -4.8311 27 7 2.9889 -2.0091 -3.6330 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 0.7096 1.1617 3.4844 32 1 2.2491 -1.6316 -1.1527 33 1 2.6104 0.8750 -5.0672 34 1 2.9256 -1.5996 -7.6191 35 1 3.5111 0.0555 -7.3254 36 1 4.5968 -0.8918 -9.3141 37 1 6.3125 -0.6692 -8.8452 38 1 6.0044 -2.9405 -10.0642 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433673699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:40 Heat of formation + Delta-G solvation = -38.640237 kcal Electronic energy + Delta-G solvation = -24622.352445 eV Core-core repulsion = 20694.446561 eV Total energy + Delta-G solvation = -3927.905884 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.24532 -42.54811 -40.24472 -38.58214 -36.71407 -35.96173 -35.69637 -34.28536 -32.26374 -31.77730 -30.41161 -27.41994 -27.30231 -24.97924 -24.16563 -23.53689 -22.70258 -22.56333 -21.13019 -19.68824 -19.25942 -18.29666 -17.87277 -17.61838 -17.17868 -17.05197 -16.83203 -16.20572 -15.88440 -15.71411 -15.56271 -15.24035 -14.91433 -14.68983 -14.37737 -14.28967 -13.80029 -13.62827 -13.28356 -13.03542 -12.98394 -12.85394 -12.72667 -12.31097 -12.25878 -12.14868 -12.01353 -11.92255 -11.29816 -11.11150 -11.00342 -10.58187 -10.37860 -10.29776 -9.72661 -8.16758 -6.33311 0.18783 0.72863 1.06382 1.45549 1.47558 1.55395 1.60276 1.73081 2.34135 2.40287 2.56157 2.56737 2.99139 3.13269 3.22612 3.33271 3.61925 3.79388 3.97078 4.05955 4.17966 4.36908 4.43263 4.66468 4.68087 4.74075 4.83415 4.95419 5.10156 5.43416 5.47197 5.59988 5.69464 5.81826 5.89279 6.10633 6.23487 6.72122 6.80068 7.03670 7.06476 7.30042 7.46227 8.89370 Molecular weight = 309.13amu Principal moments of inertia in cm(-1) A = 0.027790 B = 0.002547 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.325056 B =10991.456124 C =11671.537801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.271 3.729 3 H 0.010 0.990 4 C -0.552 4.552 5 H 0.065 0.935 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.268 1.268 12 N -0.695 5.695 13 C 0.588 3.412 14 O -0.584 6.584 15 C -0.123 4.123 16 C 0.119 3.881 17 N -0.354 5.354 18 C 0.104 3.896 19 C 0.043 3.957 20 H 0.134 0.866 21 C 0.083 3.917 22 N -0.719 5.719 23 C 0.634 3.366 24 O -0.584 6.584 25 O -0.336 6.336 26 N -0.075 5.075 27 N -0.235 5.235 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.019 0.981 31 H 0.267 0.733 32 H 0.403 0.597 33 H 0.249 0.751 34 H 0.119 0.881 35 H 0.195 0.805 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.257 2.216 -29.255 30.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.028 0.972 4 C -0.590 4.590 5 H 0.083 0.917 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.795 3.205 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.193 1.193 12 N -0.342 5.342 13 C 0.373 3.627 14 O -0.465 6.465 15 C -0.263 4.263 16 C -0.037 4.037 17 N -0.139 5.139 18 C -0.014 4.014 19 C -0.013 4.013 20 H 0.151 0.849 21 C -0.040 4.040 22 N -0.393 5.393 23 C 0.387 3.613 24 O -0.473 6.473 25 O -0.245 6.245 26 N -0.055 5.055 27 N -0.109 5.109 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.237 0.763 33 H 0.265 0.735 34 H 0.137 0.863 35 H 0.212 0.788 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 8.331 1.039 -28.801 29.999 hybrid contribution 0.125 -0.047 0.758 0.770 sum 8.455 0.992 -28.042 29.306 Atomic orbital electron populations 1.21907 0.97931 0.99364 1.00064 1.18438 0.91366 0.92134 0.81212 0.97190 1.21494 1.32821 1.13582 0.91098 0.91652 1.25722 0.94818 0.95595 1.02000 1.70016 1.36714 1.23636 1.24749 0.85434 0.78643 0.78659 0.77814 1.19720 1.20607 1.19316 1.46232 1.63983 1.14317 1.09683 1.17253 0.77438 0.85589 0.82415 1.90717 1.54051 1.16206 1.85492 1.21553 1.16118 0.91796 0.96799 1.23870 0.93991 0.97645 0.88227 1.50628 1.43948 1.07375 1.11950 1.23123 0.95284 1.09110 0.73926 1.24601 0.98490 0.78179 1.00027 0.84873 1.23125 1.06779 0.83633 0.90478 1.45964 1.71777 1.08097 1.13462 1.18932 0.76254 0.85725 0.80389 1.91040 1.58522 1.13916 1.83834 1.87549 1.80801 1.23414 1.32761 1.82128 1.21681 1.05831 0.95899 1.74694 1.09169 1.14015 1.13027 0.90999 0.94652 0.96202 0.92369 0.76264 0.73517 0.86336 0.78798 0.83996 0.84655 0.70732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.96 9.26 71.98 0.67 -6.29 16 2 C 0.27 14.63 2.56 44.24 0.11 14.74 16 3 H 0.01 0.63 7.58 -2.39 -0.02 0.61 16 4 C -0.55 -30.72 8.73 25.60 0.22 -30.49 16 5 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 6 C 0.02 1.05 5.30 84.66 0.45 1.50 16 7 N -0.91 -52.72 11.32 21.45 0.24 -52.48 16 8 Si 0.97 43.49 29.54 68.60 2.03 45.51 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 12 N -0.70 -32.13 5.07 -449.29 -2.28 -34.41 16 13 C 0.59 24.80 7.78 86.69 0.67 25.47 16 14 O -0.58 -27.20 16.53 -4.01 -0.07 -27.27 16 15 C -0.12 -4.05 6.99 40.81 0.29 -3.76 16 16 C 0.12 2.39 11.27 83.85 0.95 3.33 16 17 N -0.35 -6.10 3.69 -347.08 -1.28 -7.38 16 18 C 0.10 0.33 6.10 86.38 0.53 0.85 16 19 C 0.04 0.22 4.07 30.96 0.13 0.35 16 20 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 21 C 0.08 -0.30 7.71 86.63 0.67 0.37 16 22 N -0.72 -4.37 6.40 -590.41 -3.78 -8.14 16 23 C 0.63 12.71 9.16 129.91 1.19 13.90 16 24 O -0.58 -18.53 18.04 19.66 0.35 -18.18 16 25 O -0.34 -6.69 10.04 -47.30 -0.47 -7.17 16 26 N -0.08 -2.23 12.95 37.02 0.48 -1.75 16 27 N -0.24 -8.22 12.04 -50.00 -0.60 -8.82 16 28 H 0.07 4.02 6.07 -2.39 -0.01 4.00 16 29 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.40 17.63 8.23 -92.71 -0.76 16.86 16 33 H 0.25 2.61 8.06 -2.91 -0.02 2.58 16 34 H 0.12 0.27 8.14 -2.38 -0.02 0.25 16 35 H 0.19 -1.79 8.08 -2.39 -0.02 -1.81 16 36 H 0.14 -1.58 7.73 -2.39 -0.02 -1.60 16 37 H 0.14 -1.19 8.14 -2.39 -0.02 -1.21 16 38 H 0.45 0.94 8.96 -92.71 -0.83 0.11 16 Total: -1.00 -93.68 337.33 0.04 -93.65 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -0.46 Total: 6.46 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 5.87 Total: 19.98 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -7.22 Total: -112.99 kcal Atomic # 8 Polarization: -52.43 SS G_CDS: -0.19 Total: -52.61 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -93.68 0.04 -93.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433673699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.005 kcal (2) G-P(sol) polarization free energy of solvation -93.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds