Wall clock time and date at job start Fri Apr 10 2020 18:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47542 * 78.62989 * 3 2 1 5 5 C 1.37099 * 119.99690 * 263.75144 * 4 3 2 6 6 H 1.08000 * 120.00023 * 204.29850 * 5 4 3 7 7 C 1.38948 * 120.00382 * 24.29791 * 5 4 3 8 8 N 1.31416 * 119.99765 * 16.84143 * 7 5 4 9 9 Si 1.86798 * 120.00223 * 196.84442 * 7 5 4 10 10 H 1.48502 * 109.47047 * 94.97748 * 9 7 5 11 11 H 1.48503 * 109.47054 * 214.97585 * 9 7 5 12 12 H 1.48501 * 109.47257 * 334.97375 * 9 7 5 13 13 C 1.34776 * 120.00481 * 83.74022 * 4 3 2 14 14 O 1.21297 * 119.99381 * 5.41580 * 13 4 3 15 15 C 1.50695 * 120.00214 * 185.40752 * 13 4 3 16 16 H 1.08997 * 109.40165 * 37.46225 * 15 13 4 17 17 C 1.53073 * 109.33019 * 157.24458 * 15 13 4 18 18 C 1.53348 * 108.42276 * 168.98487 * 17 15 13 19 19 C 1.53098 * 108.52881 * 292.31026 * 18 17 15 20 20 N 1.45747 * 110.38829 * 51.11496 * 19 18 17 21 21 C 1.46500 * 117.94706 * 160.74296 * 20 19 18 22 22 C 1.50703 * 109.47135 * 269.74083 * 21 20 19 23 23 O 1.20825 * 120.00034 * 359.97438 * 22 21 20 24 24 O 1.34232 * 119.99787 * 180.27622 * 22 21 20 25 25 C 1.33357 * 124.10631 * 340.46510 * 20 19 18 26 26 O 1.21285 * 118.24292 * 182.47743 * 25 20 19 27 27 H 1.08999 * 109.47330 * 318.62459 * 3 2 1 28 28 H 1.09005 * 109.46935 * 198.62875 * 3 2 1 29 29 H 0.97001 * 119.99760 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.67400 * 288.72077 * 17 15 13 31 31 H 1.09001 * 109.67094 * 49.25328 * 17 15 13 32 32 H 1.09001 * 109.60360 * 52.22992 * 18 17 15 33 33 H 1.09009 * 109.59729 * 172.54890 * 18 17 15 34 34 H 1.08999 * 109.49607 * 290.73902 * 19 18 17 35 35 H 1.08996 * 109.20557 * 171.30765 * 19 18 17 36 36 H 1.08998 * 109.47166 * 149.73889 * 21 20 19 37 37 H 1.08999 * 109.47024 * 29.73896 * 21 20 19 38 38 H 0.96700 * 116.99557 * 179.72655 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0965 -0.2714 -1.3541 5 6 3.4474 -1.5473 -1.7127 6 1 4.1486 -1.7083 -2.5182 7 6 2.9010 -2.6333 -1.0398 8 7 1.8239 -2.4759 -0.3036 9 14 3.6975 -4.3170 -1.1817 10 1 4.6221 -4.5251 -0.0384 11 1 2.6457 -5.3652 -1.1648 12 1 4.4579 -4.3992 -2.4546 13 6 3.2007 0.7324 -2.2473 14 8 2.9846 1.8753 -1.9032 15 6 3.5861 0.4350 -3.6735 16 1 3.1228 -0.5008 -3.9861 17 6 3.0988 1.5703 -4.5773 18 6 3.7321 1.3927 -5.9626 19 6 5.2389 1.6365 -5.8436 20 7 5.7992 0.8347 -4.7631 21 6 7.2446 0.5957 -4.7638 22 6 7.5447 -0.6664 -5.5308 23 8 6.6436 -1.3014 -6.0255 24 8 8.8125 -1.0884 -5.6590 25 6 5.0794 0.3094 -3.7709 26 8 5.6619 -0.3028 -2.9010 27 1 2.9716 -0.7703 0.6793 28 1 2.9708 0.9747 0.3283 29 1 1.4423 -3.2341 0.1658 30 1 2.0128 1.5312 -4.6625 31 1 3.4001 2.5295 -4.1563 32 1 3.5490 0.3798 -6.3213 33 1 3.2978 2.1110 -6.6580 34 1 5.4218 2.6918 -5.6413 35 1 5.7214 1.3638 -6.7821 36 1 7.5958 0.4894 -3.7375 37 1 7.7517 1.4371 -5.2361 38 1 8.9550 -1.9054 -6.1563 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610280.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:13 Heat of formation + Delta-G solvation = -112.002543 kcal Electronic energy + Delta-G solvation = -26715.565795 eV Core-core repulsion = 22752.185931 eV Total energy + Delta-G solvation = -3963.379864 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.95042 -39.84381 -38.38273 -36.36386 -36.10021 -35.53187 -34.31473 -33.77052 -31.59908 -29.93422 -28.37477 -27.55696 -25.10224 -24.11092 -22.78700 -21.38299 -19.67809 -18.60941 -18.16314 -17.71841 -16.95428 -16.77510 -16.42685 -16.25942 -15.98484 -15.48206 -14.78188 -14.45519 -14.26527 -13.86762 -13.76107 -13.34607 -13.27786 -12.95830 -12.66497 -12.55818 -12.35546 -11.83197 -11.70039 -11.54707 -11.40163 -11.31013 -11.18002 -11.12589 -10.99660 -10.78948 -10.56348 -10.48787 -10.40516 -10.14640 -9.31443 -9.20672 -8.79416 -8.66115 -7.98065 -6.48054 -4.03549 2.17214 2.54856 2.88461 3.13013 3.23507 3.28336 3.36374 3.59861 3.88984 4.13965 4.27992 4.67641 4.72296 4.80435 4.93281 5.03935 5.05706 5.10778 5.19625 5.38211 5.43291 5.53098 5.61919 5.77106 5.85418 6.00552 6.14556 6.23883 6.40016 6.43107 6.47362 6.55653 6.63535 7.44204 7.50276 7.56188 7.83348 8.30184 8.45128 8.97608 8.98375 9.27442 9.68030 10.56917 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.005978 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.788351 B = 4682.732627 C = 6072.508402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C 0.259 3.741 3 C 0.231 3.769 4 N -0.422 5.422 5 C -0.325 4.325 6 H 0.114 0.886 7 C 0.036 3.964 8 N -0.870 5.870 9 Si 0.925 3.075 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.480 3.520 14 O -0.597 6.597 15 C -0.101 4.101 16 H 0.126 0.874 17 C -0.107 4.107 18 C -0.135 4.135 19 C 0.118 3.882 20 N -0.596 5.596 21 C 0.119 3.881 22 C 0.460 3.540 23 O -0.503 6.503 24 O -0.520 6.520 25 C 0.536 3.464 26 O -0.514 6.514 27 H 0.118 0.882 28 H 0.089 0.911 29 H 0.274 0.726 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.183 5.401 -11.317 17.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.059 4.059 3 C 0.105 3.895 4 N -0.139 5.139 5 C -0.453 4.453 6 H 0.131 0.869 7 C -0.169 4.169 8 N -0.508 5.508 9 Si 0.752 3.248 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.268 3.732 14 O -0.483 6.483 15 C -0.125 4.125 16 H 0.144 0.856 17 C -0.145 4.145 18 C -0.172 4.172 19 C -0.004 4.004 20 N -0.331 5.331 21 C -0.006 4.006 22 C 0.300 3.700 23 O -0.390 6.390 24 O -0.331 6.331 25 C 0.325 3.675 26 O -0.388 6.388 27 H 0.136 0.864 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.149 0.851 37 H 0.136 0.864 38 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 10.219 5.662 -10.425 15.658 hybrid contribution 0.836 -1.900 -0.550 2.148 sum 11.055 3.761 -10.975 16.026 Atomic orbital electron populations 1.80827 1.13655 1.13357 1.08473 1.29088 0.95188 0.89161 0.92442 1.18455 0.81627 1.02041 0.87417 1.43451 1.54616 1.08091 1.07783 1.20014 1.24247 0.80071 1.20928 0.86850 1.25370 0.94425 1.00206 0.96928 1.69808 1.17399 1.32763 1.30792 0.85917 0.78685 0.81035 0.79177 1.20130 1.21128 1.19297 1.19443 0.82823 0.85176 0.85777 1.90556 1.57201 1.21125 1.79373 1.21132 0.91938 1.02752 0.96694 0.85593 1.21550 1.01281 0.98829 0.92871 1.21921 0.93589 1.03418 0.98301 1.21460 0.95092 0.94657 0.89231 1.47103 1.05940 1.53389 1.26698 1.20809 0.83886 0.92750 1.03194 1.24275 0.80017 0.87638 0.78066 1.90739 1.46745 1.56130 1.45360 1.84515 1.30828 1.46079 1.71720 1.19953 0.89625 0.77574 0.80391 1.90775 1.70620 1.39590 1.37800 0.86402 0.89342 0.91549 0.90529 0.89786 0.90671 0.89674 0.91297 0.91167 0.85067 0.86370 0.73318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.58 18.54 42.15 0.78 -11.79 16 2 C 0.26 6.42 13.35 -20.76 -0.28 6.14 16 3 C 0.23 5.28 5.11 -6.83 -0.03 5.25 16 4 N -0.42 -10.22 2.59 -117.94 -0.31 -10.53 16 5 C -0.33 -8.09 7.95 -14.93 -0.12 -8.21 16 6 H 0.11 2.87 4.99 -52.49 -0.26 2.61 16 7 C 0.04 0.89 4.93 -17.47 -0.09 0.80 16 8 N -0.87 -22.39 9.47 55.50 0.53 -21.87 16 9 Si 0.93 20.10 29.58 -169.99 -5.03 15.07 16 10 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 13 C 0.48 11.07 6.36 -10.99 -0.07 11.00 16 14 O -0.60 -14.58 15.48 5.54 0.09 -14.49 16 15 C -0.10 -1.94 1.99 -93.14 -0.19 -2.13 16 16 H 0.13 2.52 7.25 -51.93 -0.38 2.15 16 17 C -0.11 -1.62 5.03 -26.51 -0.13 -1.76 16 18 C -0.13 -1.51 6.03 -26.50 -0.16 -1.67 16 19 C 0.12 1.24 6.32 -4.40 -0.03 1.21 16 20 N -0.60 -8.32 2.30 -176.23 -0.41 -8.72 16 21 C 0.12 1.35 5.81 -5.19 -0.03 1.32 16 22 C 0.46 5.81 8.38 36.01 0.30 6.11 16 23 O -0.50 -8.23 17.18 -18.75 -0.32 -8.55 16 24 O -0.52 -4.96 13.42 -39.26 -0.53 -5.49 16 25 C 0.54 9.91 6.82 -11.87 -0.08 9.83 16 26 O -0.51 -11.08 13.09 5.55 0.07 -11.01 16 27 H 0.12 2.65 6.78 -51.93 -0.35 2.30 16 28 H 0.09 1.84 7.55 -51.93 -0.39 1.45 16 29 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.33 7.45 -51.93 -0.39 0.94 16 32 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 33 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.13 1.61 7.13 -51.93 -0.37 1.24 16 37 H 0.12 0.83 8.01 -51.93 -0.42 0.42 16 38 H 0.41 2.35 9.10 45.56 0.41 2.77 16 LS Contribution 328.31 15.07 4.95 4.95 Total: -1.00 -34.68 328.31 -4.47 -39.14 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -3.39 Total: 5.40 kcal Atomic # 6 Polarization: 28.80 SS G_CDS: -0.90 Total: 27.89 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.60 Total: -52.91 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -0.69 Total: -39.54 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.68 -4.47 -39.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610280.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.861 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds