Wall clock time and date at job start Fri Apr 10 2020 18:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47542 * 78.62989 * 3 2 1 5 5 C 1.37099 * 119.99690 * 263.75144 * 4 3 2 6 6 H 1.08000 * 120.00023 * 204.29850 * 5 4 3 7 7 C 1.38948 * 120.00382 * 24.29791 * 5 4 3 8 8 N 1.31416 * 119.99765 * 16.84143 * 7 5 4 9 9 Si 1.86798 * 120.00223 * 196.84442 * 7 5 4 10 10 H 1.48502 * 109.47047 * 94.97748 * 9 7 5 11 11 H 1.48503 * 109.47054 * 214.97585 * 9 7 5 12 12 H 1.48501 * 109.47257 * 334.97375 * 9 7 5 13 13 C 1.34776 * 120.00481 * 83.74022 * 4 3 2 14 14 O 1.21297 * 119.99381 * 5.41580 * 13 4 3 15 15 C 1.50695 * 120.00214 * 185.40752 * 13 4 3 16 16 H 1.08997 * 109.40165 * 37.46225 * 15 13 4 17 17 C 1.53073 * 109.33019 * 157.24458 * 15 13 4 18 18 C 1.53348 * 108.42276 * 168.98487 * 17 15 13 19 19 C 1.53098 * 108.52881 * 292.31026 * 18 17 15 20 20 N 1.45747 * 110.38829 * 51.11496 * 19 18 17 21 21 C 1.46500 * 117.94706 * 160.74296 * 20 19 18 22 22 C 1.50703 * 109.47135 * 269.74083 * 21 20 19 23 23 O 1.20825 * 120.00034 * 359.97438 * 22 21 20 24 24 O 1.34232 * 119.99787 * 180.27622 * 22 21 20 25 25 C 1.33357 * 124.10631 * 340.46510 * 20 19 18 26 26 O 1.21285 * 118.24292 * 182.47743 * 25 20 19 27 27 H 1.08999 * 109.47330 * 318.62459 * 3 2 1 28 28 H 1.09005 * 109.46935 * 198.62875 * 3 2 1 29 29 H 0.97001 * 119.99760 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.67400 * 288.72077 * 17 15 13 31 31 H 1.09001 * 109.67094 * 49.25328 * 17 15 13 32 32 H 1.09001 * 109.60360 * 52.22992 * 18 17 15 33 33 H 1.09009 * 109.59729 * 172.54890 * 18 17 15 34 34 H 1.08999 * 109.49607 * 290.73902 * 19 18 17 35 35 H 1.08996 * 109.20557 * 171.30765 * 19 18 17 36 36 H 1.08998 * 109.47166 * 149.73889 * 21 20 19 37 37 H 1.08999 * 109.47024 * 29.73896 * 21 20 19 38 38 H 0.96700 * 116.99557 * 179.72655 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0965 -0.2714 -1.3541 5 6 3.4474 -1.5473 -1.7127 6 1 4.1486 -1.7083 -2.5182 7 6 2.9010 -2.6333 -1.0398 8 7 1.8239 -2.4759 -0.3036 9 14 3.6975 -4.3170 -1.1817 10 1 4.6221 -4.5251 -0.0384 11 1 2.6457 -5.3652 -1.1648 12 1 4.4579 -4.3992 -2.4546 13 6 3.2007 0.7324 -2.2473 14 8 2.9846 1.8753 -1.9032 15 6 3.5861 0.4350 -3.6735 16 1 3.1228 -0.5008 -3.9861 17 6 3.0988 1.5703 -4.5773 18 6 3.7321 1.3927 -5.9626 19 6 5.2389 1.6365 -5.8436 20 7 5.7992 0.8347 -4.7631 21 6 7.2446 0.5957 -4.7638 22 6 7.5447 -0.6664 -5.5308 23 8 6.6436 -1.3014 -6.0255 24 8 8.8125 -1.0884 -5.6590 25 6 5.0794 0.3094 -3.7709 26 8 5.6619 -0.3028 -2.9010 27 1 2.9716 -0.7703 0.6793 28 1 2.9708 0.9747 0.3283 29 1 1.4423 -3.2341 0.1658 30 1 2.0128 1.5312 -4.6625 31 1 3.4001 2.5295 -4.1563 32 1 3.5490 0.3798 -6.3213 33 1 3.2978 2.1110 -6.6580 34 1 5.4218 2.6918 -5.6413 35 1 5.7214 1.3638 -6.7821 36 1 7.5958 0.4894 -3.7375 37 1 7.7517 1.4371 -5.2361 38 1 8.9550 -1.9054 -6.1563 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610280.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:12 Heat of formation + Delta-G solvation = -136.696937 kcal Electronic energy + Delta-G solvation = -26716.636624 eV Core-core repulsion = 22752.185931 eV Total energy + Delta-G solvation = -3964.450693 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.19513 -41.03889 -39.97594 -37.72139 -37.37396 -36.97684 -36.26795 -35.00387 -33.51182 -31.23518 -29.39786 -29.26984 -26.83076 -25.49816 -23.90006 -22.40882 -21.37649 -20.03213 -19.36442 -19.00703 -18.55219 -18.13244 -17.83339 -17.48873 -17.40945 -16.59690 -16.41070 -16.24489 -15.56666 -15.21271 -15.06304 -14.93925 -14.48221 -14.41702 -14.17261 -13.92559 -13.76532 -13.42492 -13.27536 -13.14662 -12.92978 -12.78502 -12.60026 -12.50052 -12.31548 -12.16088 -12.09415 -12.03190 -11.83504 -11.64622 -11.17254 -10.68691 -10.50351 -9.90740 -9.81961 -8.38947 -5.98542 1.21263 1.31496 1.43002 1.45104 1.55218 1.58863 1.80500 2.14124 2.26141 2.35749 2.43001 3.01379 3.07438 3.54981 3.69109 3.78214 3.84530 3.97937 4.20935 4.29938 4.35234 4.46865 4.47965 4.58743 4.65880 4.71801 4.79825 4.93705 5.07600 5.09859 5.33810 5.41782 5.52277 5.63692 5.69858 6.29686 6.39485 6.97944 6.99991 7.05122 7.14028 7.40681 7.80712 8.65603 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.005978 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.788351 B = 4682.732627 C = 6072.508402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.268 3.732 3 C 0.231 3.769 4 N -0.437 5.437 5 C -0.328 4.328 6 H 0.107 0.893 7 C 0.002 3.998 8 N -0.894 5.894 9 Si 0.982 3.018 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.475 3.525 14 O -0.614 6.614 15 C -0.104 4.104 16 H 0.109 0.891 17 C -0.102 4.102 18 C -0.127 4.127 19 C 0.109 3.891 20 N -0.589 5.589 21 C 0.114 3.886 22 C 0.466 3.534 23 O -0.547 6.547 24 O -0.509 6.509 25 C 0.532 3.468 26 O -0.556 6.556 27 H 0.120 0.880 28 H 0.108 0.892 29 H 0.272 0.728 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.172 0.828 38 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.020 6.312 -13.229 20.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.049 4.049 3 C 0.104 3.896 4 N -0.155 5.155 5 C -0.456 4.456 6 H 0.124 0.876 7 C -0.200 4.200 8 N -0.533 5.533 9 Si 0.808 3.192 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.264 3.736 14 O -0.500 6.500 15 C -0.128 4.128 16 H 0.127 0.873 17 C -0.140 4.140 18 C -0.164 4.164 19 C -0.012 4.012 20 N -0.323 5.323 21 C -0.010 4.010 22 C 0.308 3.692 23 O -0.438 6.438 24 O -0.322 6.322 25 C 0.320 3.680 26 O -0.434 6.434 27 H 0.138 0.862 28 H 0.125 0.875 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.139 0.861 37 H 0.189 0.811 38 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 12.099 6.597 -12.386 18.529 hybrid contribution 0.342 -2.109 -0.022 2.137 sum 12.441 4.488 -12.407 18.135 Atomic orbital electron populations 1.80808 1.14469 1.14438 1.09418 1.29485 0.95595 0.88266 0.91587 1.18588 0.80523 1.03058 0.87386 1.43644 1.55104 1.08271 1.08454 1.20034 1.24045 0.80579 1.20942 0.87565 1.25978 0.94639 1.02711 0.96705 1.69886 1.18325 1.33309 1.31741 0.85058 0.77732 0.77614 0.78829 1.19390 1.21130 1.19937 1.20146 0.81612 0.84675 0.87189 1.90523 1.57658 1.21653 1.80209 1.21133 0.93367 1.03574 0.94755 0.87316 1.21553 1.01232 0.96758 0.94425 1.21928 0.94307 1.04005 0.96176 1.21839 0.94390 0.95754 0.89175 1.47110 1.06986 1.52127 1.26030 1.21149 0.82441 0.94276 1.03172 1.24429 0.80185 0.87459 0.77156 1.90735 1.48071 1.57460 1.47490 1.84473 1.29057 1.47083 1.71599 1.19741 0.89221 0.77742 0.81259 1.90742 1.71172 1.41733 1.39788 0.86216 0.87476 0.91765 0.91079 0.90195 0.91759 0.85891 0.88246 0.88444 0.86066 0.81105 0.71276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -26.95 18.54 20.00 0.37 -26.58 16 2 C 0.27 13.46 13.35 89.44 1.19 14.66 16 3 C 0.23 10.70 5.11 84.57 0.43 11.13 16 4 N -0.44 -21.57 2.59 -645.42 -1.67 -23.24 16 5 C -0.33 -16.67 7.95 84.04 0.67 -16.00 16 6 H 0.11 5.53 4.99 -2.91 -0.01 5.52 16 7 C 0.00 0.10 4.93 84.93 0.42 0.52 16 8 N -0.89 -46.60 9.47 21.66 0.21 -46.40 16 9 Si 0.98 41.68 29.58 68.60 2.03 43.71 16 10 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 11 H -0.29 -12.02 7.11 99.48 0.71 -11.32 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 13 C 0.47 22.22 6.36 87.66 0.56 22.78 16 14 O -0.61 -30.15 15.48 -3.08 -0.05 -30.20 16 15 C -0.10 -4.04 1.99 -12.43 -0.02 -4.06 16 16 H 0.11 4.53 7.25 -2.39 -0.02 4.51 16 17 C -0.10 -2.97 5.03 30.74 0.15 -2.81 16 18 C -0.13 -2.48 6.03 30.74 0.19 -2.30 16 19 C 0.11 1.86 6.32 86.55 0.55 2.40 16 20 N -0.59 -15.12 2.30 -830.66 -1.91 -17.04 16 21 C 0.11 2.27 5.81 85.63 0.50 2.77 16 22 C 0.47 10.74 8.38 71.24 0.60 11.33 16 23 O -0.55 -17.20 17.18 21.97 0.38 -16.83 16 24 O -0.51 -8.38 13.42 -51.44 -0.69 -9.07 16 25 C 0.53 19.49 6.82 87.71 0.60 20.08 16 26 O -0.56 -24.29 13.09 -3.04 -0.04 -24.33 16 27 H 0.12 5.48 6.78 -2.39 -0.02 5.46 16 28 H 0.11 4.50 7.55 -2.38 -0.02 4.48 16 29 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.08 2.40 7.45 -2.39 -0.02 2.39 16 32 H 0.06 1.43 8.12 -2.39 -0.02 1.41 16 33 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 35 H 0.10 1.23 8.10 -2.39 -0.02 1.21 16 36 H 0.12 2.77 7.13 -2.39 -0.02 2.76 16 37 H 0.17 1.56 8.01 -2.39 -0.02 1.54 16 38 H 0.43 3.86 9.10 -74.06 -0.67 3.19 16 Total: -1.00 -76.86 328.31 4.91 -71.96 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.46 Total: 17.51 kcal Atomic # 6 Polarization: 54.67 SS G_CDS: 5.83 Total: 60.50 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -3.01 Total: -113.26 kcal Atomic # 8 Polarization: -80.01 SS G_CDS: -0.40 Total: -80.41 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -76.86 4.91 -71.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610280.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.740 kcal (2) G-P(sol) polarization free energy of solvation -76.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds