Wall clock time and date at job start Fri Apr 10 2020 18:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47431 * 316.11191 * 3 2 1 5 5 C 1.37099 * 119.99711 * 274.68754 * 4 3 2 6 6 H 1.08005 * 119.99592 * 177.78004 * 5 4 3 7 7 C 1.38950 * 120.00202 * 357.79237 * 5 4 3 8 8 N 1.31409 * 120.00311 * 32.55348 * 7 5 4 9 9 Si 1.86800 * 119.99607 * 212.55436 * 7 5 4 10 10 H 1.48501 * 109.47439 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47112 * 119.99824 * 9 7 5 12 12 H 1.48497 * 109.47123 * 239.99654 * 9 7 5 13 13 C 1.34768 * 119.99938 * 94.69110 * 4 3 2 14 14 O 1.21294 * 120.00247 * 3.52157 * 13 4 3 15 15 C 1.50703 * 120.00090 * 183.51709 * 13 4 3 16 16 H 1.08989 * 109.40463 * 306.96889 * 15 13 4 17 17 C 1.53071 * 109.40495 * 187.13402 * 15 13 4 18 18 C 1.53343 * 108.42661 * 190.97270 * 17 15 13 19 19 C 1.52917 * 108.67364 * 67.53600 * 18 17 15 20 20 N 1.45751 * 110.48876 * 309.24779 * 19 18 17 21 21 C 1.46505 * 117.94967 * 199.07530 * 20 19 18 22 22 C 1.50700 * 109.46910 * 89.99592 * 21 20 19 23 23 O 1.20821 * 120.00182 * 0.02562 * 22 21 20 24 24 O 1.34230 * 119.99747 * 180.02562 * 22 21 20 25 25 C 1.33353 * 124.10782 * 19.34981 * 20 19 18 26 26 O 1.21276 * 118.25034 * 177.50115 * 25 20 19 27 27 H 1.09005 * 109.47116 * 196.11233 * 3 2 1 28 28 H 1.09000 * 109.47022 * 76.11441 * 3 2 1 29 29 H 0.96994 * 120.00169 * 180.02562 * 8 7 5 30 30 H 1.09012 * 109.66906 * 71.24069 * 17 15 13 31 31 H 1.09002 * 109.67552 * 310.71417 * 17 15 13 32 32 H 1.08999 * 109.60268 * 307.77584 * 18 17 15 33 33 H 1.09005 * 109.60102 * 187.28935 * 18 17 15 34 34 H 1.09002 * 109.30193 * 188.93116 * 19 18 17 35 35 H 1.09011 * 109.13296 * 69.45065 * 19 18 17 36 36 H 1.09005 * 109.46463 * 329.99656 * 21 20 19 37 37 H 1.09000 * 109.46877 * 209.99763 * 21 20 19 38 38 H 0.96697 * 116.99831 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9945 0.9575 5 6 3.2337 -0.6631 2.2808 6 1 3.5598 -1.4069 2.9927 7 6 2.9526 0.6295 2.7060 8 7 2.0145 1.3287 2.1077 9 14 3.9085 1.3734 4.1281 10 1 4.9019 0.3883 4.6260 11 1 4.6124 2.5963 3.6654 12 1 2.9705 1.7268 5.2238 13 6 3.4120 -2.2357 0.5375 14 8 3.3521 -2.5102 -0.6424 15 6 3.8391 -3.2826 1.5339 16 1 4.6586 -2.8943 2.1383 17 6 4.3066 -4.5345 0.7874 18 6 4.4718 -5.6712 1.8032 19 6 3.0916 -6.0533 2.3392 20 7 2.3745 -4.8684 2.7931 21 6 1.2468 -5.0570 3.7091 22 6 1.7423 -5.0126 5.1316 23 8 2.9168 -4.8406 5.3572 24 8 0.8789 -5.1643 6.1481 25 6 2.6773 -3.6236 2.4228 26 8 1.9803 -2.7182 2.8294 27 1 2.9709 0.9882 0.2852 28 1 2.9714 -0.2458 -0.9976 29 1 1.8186 2.2311 2.4043 30 1 5.2613 -4.3360 0.3001 31 1 3.5641 -4.8150 0.0402 32 1 5.1041 -5.3374 2.6259 33 1 4.9266 -6.5338 1.3160 34 1 3.2079 -6.7456 3.1731 35 1 2.5217 -6.5374 1.5460 36 1 0.7803 -6.0233 3.5168 37 1 0.5160 -4.2633 3.5539 38 1 1.2436 -5.1288 7.0429 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:16 Heat of formation + Delta-G solvation = -99.175103 kcal Electronic energy + Delta-G solvation = -26984.948336 eV Core-core repulsion = 23022.124712 eV Total energy + Delta-G solvation = -3962.823624 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87837 -39.79794 -38.32100 -36.31032 -36.05427 -35.49636 -34.28013 -33.71961 -31.59949 -29.88297 -28.28427 -27.57128 -25.06063 -24.06740 -22.70089 -21.32044 -19.57032 -18.60024 -18.12286 -17.73018 -17.00545 -16.76045 -16.20346 -16.15854 -15.85066 -15.45866 -14.72551 -14.46647 -14.26559 -13.89214 -13.70788 -13.33357 -13.08469 -12.86323 -12.69636 -12.53626 -12.25369 -11.94270 -11.52846 -11.47714 -11.45027 -11.28387 -11.22565 -11.05431 -10.95422 -10.76592 -10.53399 -10.46626 -10.36098 -10.12838 -9.16581 -8.95672 -8.71874 -8.58182 -8.09553 -6.51032 -3.76787 2.24509 2.64329 2.94016 3.15088 3.25522 3.29499 3.47248 3.65733 3.86292 4.20018 4.27521 4.69064 4.74858 4.84185 4.93903 5.06174 5.07909 5.17152 5.26278 5.46491 5.49042 5.59027 5.66188 5.76391 5.86147 5.97891 6.08608 6.24452 6.46517 6.49647 6.49752 6.56443 6.74563 7.46371 7.53650 7.61534 7.90531 8.28405 8.60842 8.98491 9.00738 9.30392 9.70332 10.55510 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.006506 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.029128 B = 4302.911862 C = 5216.561934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C 0.259 3.741 3 C 0.221 3.779 4 N -0.418 5.418 5 C -0.309 4.309 6 H 0.113 0.887 7 C 0.040 3.960 8 N -0.855 5.855 9 Si 0.910 3.090 10 H -0.268 1.268 11 H -0.278 1.278 12 H -0.285 1.285 13 C 0.461 3.539 14 O -0.602 6.602 15 C -0.098 4.098 16 H 0.121 0.879 17 C -0.103 4.103 18 C -0.135 4.135 19 C 0.118 3.882 20 N -0.598 5.598 21 C 0.119 3.881 22 C 0.462 3.538 23 O -0.505 6.505 24 O -0.519 6.519 25 C 0.520 3.480 26 O -0.486 6.486 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.272 0.728 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.131 0.869 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.644 -13.388 3.631 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.059 4.059 3 C 0.094 3.906 4 N -0.134 5.134 5 C -0.435 4.435 6 H 0.131 0.869 7 C -0.165 4.165 8 N -0.493 5.493 9 Si 0.736 3.264 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.211 1.211 13 C 0.249 3.751 14 O -0.489 6.489 15 C -0.122 4.122 16 H 0.139 0.861 17 C -0.141 4.141 18 C -0.172 4.172 19 C -0.005 4.005 20 N -0.335 5.335 21 C -0.006 4.006 22 C 0.302 3.698 23 O -0.392 6.392 24 O -0.331 6.331 25 C 0.307 3.693 26 O -0.357 6.357 27 H 0.146 0.854 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.135 0.865 37 H 0.148 0.852 38 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 2.660 -12.723 2.931 13.324 hybrid contribution 0.968 0.487 1.866 2.158 sum 3.628 -12.236 4.798 13.634 Atomic orbital electron populations 1.80829 1.13734 1.10311 1.11441 1.29156 0.95230 0.91234 0.90300 1.18875 0.81596 0.96265 0.93841 1.43811 1.52888 1.08361 1.08325 1.19784 1.44137 0.95755 0.83867 0.86921 1.25115 0.95427 0.96973 0.99001 1.70100 1.24142 1.12175 1.42896 0.86137 0.80198 0.79165 0.80889 1.19209 1.20388 1.21125 1.19228 0.85041 0.82607 0.88184 1.90551 1.60998 1.80104 1.17246 1.21069 0.97391 0.96724 0.96985 0.86099 1.21493 1.03073 0.92177 0.97336 1.21897 0.95894 0.99724 0.99731 1.21403 0.93378 0.86726 0.98994 1.47188 1.32921 1.07238 1.46155 1.20781 0.91173 1.06239 0.82436 1.24281 0.84526 0.72025 0.88925 1.90713 1.18746 1.44276 1.85481 1.84526 1.44638 1.84814 1.19113 1.20116 0.86470 0.81559 0.81136 1.90976 1.48390 1.42968 1.53348 0.85445 0.88904 0.91771 0.90361 0.90142 0.90788 0.89778 0.91282 0.91610 0.86541 0.85152 0.73414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.94 18.54 42.15 0.78 -12.16 16 2 C 0.26 6.56 13.77 -20.76 -0.29 6.28 16 3 C 0.22 5.05 5.30 -6.83 -0.04 5.01 16 4 N -0.42 -10.01 2.49 -117.93 -0.29 -10.31 16 5 C -0.31 -7.67 7.09 -14.93 -0.11 -7.78 16 6 H 0.11 2.84 5.10 -52.48 -0.27 2.57 16 7 C 0.04 0.99 4.87 -17.47 -0.09 0.91 16 8 N -0.86 -22.05 9.31 55.50 0.52 -21.53 16 9 Si 0.91 19.67 29.66 -169.99 -5.04 14.63 16 10 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.46 10.42 6.78 -10.99 -0.07 10.34 16 14 O -0.60 -14.39 15.24 5.55 0.08 -14.31 16 15 C -0.10 -1.83 1.99 -93.13 -0.19 -2.01 16 16 H 0.12 2.19 7.41 -51.94 -0.38 1.81 16 17 C -0.10 -1.49 4.85 -26.52 -0.13 -1.62 16 18 C -0.13 -1.48 6.02 -26.60 -0.16 -1.64 16 19 C 0.12 1.31 6.32 -4.49 -0.03 1.28 16 20 N -0.60 -9.04 2.30 -176.32 -0.41 -9.45 16 21 C 0.12 1.57 5.82 -5.19 -0.03 1.54 16 22 C 0.46 6.46 8.38 36.01 0.30 6.76 16 23 O -0.51 -8.67 17.18 -18.75 -0.32 -8.99 16 24 O -0.52 -5.71 13.42 -39.26 -0.53 -6.24 16 25 C 0.52 10.13 6.73 -11.86 -0.08 10.05 16 26 O -0.49 -11.56 12.07 5.56 0.07 -11.49 16 27 H 0.13 2.87 6.15 -51.93 -0.32 2.55 16 28 H 0.09 1.93 7.24 -51.93 -0.38 1.55 16 29 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.08 1.27 7.62 -51.93 -0.40 0.87 16 32 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.12 1.03 8.02 -51.93 -0.42 0.61 16 37 H 0.13 1.97 7.12 -51.93 -0.37 1.60 16 38 H 0.41 2.84 9.10 45.56 0.41 3.25 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -35.14 326.18 -4.48 -39.62 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -3.36 Total: 6.18 kcal Atomic # 6 Polarization: 30.02 SS G_CDS: -0.90 Total: 29.12 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.60 Total: -53.45 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.70 Total: -41.03 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.04 Total: 14.63 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.14 -4.48 -39.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.552 kcal (2) G-P(sol) polarization free energy of solvation -35.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds