Wall clock time and date at job start Fri Apr 10 2020 18:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47431 * 316.11191 * 3 2 1 5 5 C 1.37099 * 119.99711 * 274.68754 * 4 3 2 6 6 H 1.08005 * 119.99592 * 177.78004 * 5 4 3 7 7 C 1.38950 * 120.00202 * 357.79237 * 5 4 3 8 8 N 1.31409 * 120.00311 * 32.55348 * 7 5 4 9 9 Si 1.86800 * 119.99607 * 212.55436 * 7 5 4 10 10 H 1.48501 * 109.47439 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47112 * 119.99824 * 9 7 5 12 12 H 1.48497 * 109.47123 * 239.99654 * 9 7 5 13 13 C 1.34768 * 119.99938 * 94.69110 * 4 3 2 14 14 O 1.21294 * 120.00247 * 3.52157 * 13 4 3 15 15 C 1.50703 * 120.00090 * 183.51709 * 13 4 3 16 16 H 1.08989 * 109.40463 * 306.96889 * 15 13 4 17 17 C 1.53071 * 109.40495 * 187.13402 * 15 13 4 18 18 C 1.53343 * 108.42661 * 190.97270 * 17 15 13 19 19 C 1.52917 * 108.67364 * 67.53600 * 18 17 15 20 20 N 1.45751 * 110.48876 * 309.24779 * 19 18 17 21 21 C 1.46505 * 117.94967 * 199.07530 * 20 19 18 22 22 C 1.50700 * 109.46910 * 89.99592 * 21 20 19 23 23 O 1.20821 * 120.00182 * 0.02562 * 22 21 20 24 24 O 1.34230 * 119.99747 * 180.02562 * 22 21 20 25 25 C 1.33353 * 124.10782 * 19.34981 * 20 19 18 26 26 O 1.21276 * 118.25034 * 177.50115 * 25 20 19 27 27 H 1.09005 * 109.47116 * 196.11233 * 3 2 1 28 28 H 1.09000 * 109.47022 * 76.11441 * 3 2 1 29 29 H 0.96994 * 120.00169 * 180.02562 * 8 7 5 30 30 H 1.09012 * 109.66906 * 71.24069 * 17 15 13 31 31 H 1.09002 * 109.67552 * 310.71417 * 17 15 13 32 32 H 1.08999 * 109.60268 * 307.77584 * 18 17 15 33 33 H 1.09005 * 109.60102 * 187.28935 * 18 17 15 34 34 H 1.09002 * 109.30193 * 188.93116 * 19 18 17 35 35 H 1.09011 * 109.13296 * 69.45065 * 19 18 17 36 36 H 1.09005 * 109.46463 * 329.99656 * 21 20 19 37 37 H 1.09000 * 109.46877 * 209.99763 * 21 20 19 38 38 H 0.96697 * 116.99831 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9945 0.9575 5 6 3.2337 -0.6631 2.2808 6 1 3.5598 -1.4069 2.9927 7 6 2.9526 0.6295 2.7060 8 7 2.0145 1.3287 2.1077 9 14 3.9085 1.3734 4.1281 10 1 4.9019 0.3883 4.6260 11 1 4.6124 2.5963 3.6654 12 1 2.9705 1.7268 5.2238 13 6 3.4120 -2.2357 0.5375 14 8 3.3521 -2.5102 -0.6424 15 6 3.8391 -3.2826 1.5339 16 1 4.6586 -2.8943 2.1383 17 6 4.3066 -4.5345 0.7874 18 6 4.4718 -5.6712 1.8032 19 6 3.0916 -6.0533 2.3392 20 7 2.3745 -4.8684 2.7931 21 6 1.2468 -5.0570 3.7091 22 6 1.7423 -5.0126 5.1316 23 8 2.9168 -4.8406 5.3572 24 8 0.8789 -5.1643 6.1481 25 6 2.6773 -3.6236 2.4228 26 8 1.9803 -2.7182 2.8294 27 1 2.9709 0.9882 0.2852 28 1 2.9714 -0.2458 -0.9976 29 1 1.8186 2.2311 2.4043 30 1 5.2613 -4.3360 0.3001 31 1 3.5641 -4.8150 0.0402 32 1 5.1041 -5.3374 2.6259 33 1 4.9266 -6.5338 1.3160 34 1 3.2079 -6.7456 3.1731 35 1 2.5217 -6.5374 1.5460 36 1 0.7803 -6.0233 3.5168 37 1 0.5160 -4.2633 3.5539 38 1 1.2436 -5.1288 7.0429 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:15 Heat of formation + Delta-G solvation = -124.312212 kcal Electronic energy + Delta-G solvation = -26986.038363 eV Core-core repulsion = 23022.124712 eV Total energy + Delta-G solvation = -3963.913651 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.19587 -41.06793 -39.92659 -37.77813 -37.35770 -37.00419 -36.22790 -34.98382 -33.47707 -31.20421 -29.41109 -29.27901 -26.77240 -25.45978 -23.87305 -22.40596 -21.26675 -20.06821 -19.42317 -19.05888 -18.61597 -17.90755 -17.85882 -17.48786 -17.33768 -16.62910 -16.37290 -16.22996 -15.64914 -15.24275 -15.04297 -14.77123 -14.50054 -14.40856 -14.14454 -13.96035 -13.74777 -13.41384 -13.30932 -13.18673 -13.01866 -12.73859 -12.53936 -12.47417 -12.27851 -12.11306 -12.04800 -12.00530 -11.78138 -11.63305 -10.99283 -10.55969 -10.45091 -9.98589 -9.80378 -8.38515 -5.68189 1.16147 1.29548 1.46678 1.48647 1.55703 1.59403 1.95783 2.07676 2.25265 2.38949 2.41514 2.97702 3.09745 3.58070 3.75262 3.82021 3.89247 3.99451 4.15288 4.27821 4.30913 4.42376 4.46916 4.59935 4.65925 4.76829 4.91973 4.97349 5.11473 5.16360 5.37116 5.46554 5.58125 5.62042 5.64921 6.34992 6.39255 6.94693 6.97793 7.11708 7.21674 7.46605 7.85969 8.68536 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.006506 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.029128 B = 4302.911862 C = 5216.561934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C 0.266 3.734 3 C 0.221 3.779 4 N -0.432 5.432 5 C -0.309 4.309 6 H 0.107 0.893 7 C 0.000 4.000 8 N -0.885 5.885 9 Si 0.970 3.030 10 H -0.264 1.264 11 H -0.266 1.266 12 H -0.298 1.298 13 C 0.459 3.541 14 O -0.617 6.617 15 C -0.100 4.100 16 H 0.123 0.877 17 C -0.096 4.096 18 C -0.126 4.126 19 C 0.107 3.893 20 N -0.593 5.593 21 C 0.114 3.886 22 C 0.468 3.532 23 O -0.542 6.542 24 O -0.511 6.511 25 C 0.514 3.486 26 O -0.543 6.543 27 H 0.131 0.869 28 H 0.113 0.887 29 H 0.270 0.730 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.167 0.833 37 H 0.108 0.892 38 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.798 -15.809 4.182 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.197 5.197 2 C -0.051 4.051 3 C 0.094 3.906 4 N -0.149 5.149 5 C -0.436 4.436 6 H 0.124 0.876 7 C -0.202 4.202 8 N -0.524 5.524 9 Si 0.795 3.205 10 H -0.188 1.188 11 H -0.191 1.191 12 H -0.225 1.225 13 C 0.248 3.752 14 O -0.504 6.504 15 C -0.124 4.124 16 H 0.140 0.860 17 C -0.134 4.134 18 C -0.163 4.163 19 C -0.014 4.014 20 N -0.327 5.327 21 C -0.011 4.011 22 C 0.310 3.690 23 O -0.432 6.432 24 O -0.324 6.324 25 C 0.302 3.698 26 O -0.419 6.419 27 H 0.149 0.851 28 H 0.131 0.869 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.142 0.858 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.184 0.816 37 H 0.126 0.874 38 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 3.827 -15.215 3.497 16.074 hybrid contribution 0.554 1.094 1.698 2.095 sum 4.381 -14.121 5.195 15.671 Atomic orbital electron populations 1.80801 1.14760 1.11481 1.12670 1.29734 0.95850 0.90229 0.89276 1.19050 0.80116 0.96600 0.94800 1.44028 1.53468 1.09145 1.08271 1.19823 1.43842 0.95703 0.84240 0.87561 1.25773 0.95873 0.97195 1.01310 1.70171 1.25314 1.12345 1.44612 0.85246 0.78664 0.78733 0.77860 1.18837 1.19096 1.22525 1.19983 0.83618 0.82807 0.88772 1.90525 1.61275 1.80433 1.18213 1.21140 0.97315 0.97383 0.96560 0.85971 1.21499 1.02863 0.91414 0.97615 1.21910 0.96103 0.99589 0.98724 1.21812 0.93388 0.85401 1.00790 1.47205 1.33120 1.06962 1.45441 1.21026 0.90143 1.07976 0.81949 1.24311 0.84064 0.71013 0.89612 1.90703 1.20230 1.46173 1.86074 1.84480 1.43905 1.84015 1.19992 1.20188 0.86080 0.82558 0.80952 1.90944 1.50299 1.45092 1.55573 0.85124 0.86916 0.91944 0.89425 0.91311 0.91252 0.85803 0.88694 0.89109 0.81553 0.87448 0.71233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -28.28 18.54 20.01 0.37 -27.91 16 2 C 0.27 13.79 13.77 89.44 1.23 15.02 16 3 C 0.22 10.23 5.30 84.57 0.45 10.68 16 4 N -0.43 -21.00 2.49 -645.41 -1.61 -22.61 16 5 C -0.31 -15.61 7.09 84.04 0.60 -15.01 16 6 H 0.11 5.47 5.10 -2.91 -0.01 5.46 16 7 C 0.00 0.02 4.87 84.93 0.41 0.43 16 8 N -0.89 -46.51 9.31 21.66 0.20 -46.31 16 9 Si 0.97 40.87 29.66 68.60 2.03 42.90 16 10 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 12 H -0.30 -13.12 7.11 99.48 0.71 -12.41 16 13 C 0.46 20.78 6.78 87.66 0.59 21.38 16 14 O -0.62 -29.33 15.24 -3.07 -0.05 -29.38 16 15 C -0.10 -3.69 1.99 -12.42 -0.02 -3.72 16 16 H 0.12 4.42 7.41 -2.39 -0.02 4.40 16 17 C -0.10 -2.58 4.85 30.73 0.15 -2.43 16 18 C -0.13 -2.31 6.02 30.68 0.18 -2.12 16 19 C 0.11 1.96 6.32 86.49 0.55 2.51 16 20 N -0.59 -16.81 2.30 -830.93 -1.91 -18.73 16 21 C 0.11 2.79 5.82 85.63 0.50 3.29 16 22 C 0.47 12.30 8.38 71.24 0.60 12.90 16 23 O -0.54 -17.90 17.18 21.98 0.38 -17.53 16 24 O -0.51 -10.19 13.42 -51.41 -0.69 -10.88 16 25 C 0.51 19.92 6.73 87.72 0.59 20.51 16 26 O -0.54 -26.47 12.07 -3.02 -0.04 -26.50 16 27 H 0.13 5.98 6.15 -2.38 -0.01 5.96 16 28 H 0.11 4.69 7.24 -2.39 -0.02 4.67 16 29 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 30 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.07 2.02 7.62 -2.39 -0.02 2.00 16 32 H 0.07 1.39 8.12 -2.39 -0.02 1.37 16 33 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.09 1.34 8.10 -2.39 -0.02 1.32 16 35 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.17 2.31 8.02 -2.38 -0.02 2.29 16 37 H 0.11 3.23 7.12 -2.39 -0.02 3.22 16 38 H 0.43 5.04 9.10 -74.06 -0.67 4.36 16 Total: -1.00 -78.19 326.18 4.97 -73.21 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.46 Total: 20.29 kcal Atomic # 6 Polarization: 57.61 SS G_CDS: 5.83 Total: 63.44 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -2.95 Total: -115.56 kcal Atomic # 8 Polarization: -83.88 SS G_CDS: -0.40 Total: -84.28 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -78.19 4.97 -73.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.100 kcal (2) G-P(sol) polarization free energy of solvation -78.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds