Wall clock time and date at job start Fri Apr 10 2020 18:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34235 * 125.79258 * 2 1 4 4 H 0.97002 * 125.39702 * 359.97438 * 3 2 1 5 5 C 1.37829 * 109.20925 * 179.83831 * 3 2 1 6 6 C 1.46633 * 125.86264 * 180.17651 * 5 3 2 7 7 O 1.21603 * 120.00327 * 180.29738 * 6 5 3 8 8 O 1.34872 * 119.99920 * 0.29625 * 6 5 3 9 9 C 1.36451 * 108.27928 * 0.42515 * 5 3 2 10 10 C 1.50699 * 126.49546 * 179.76617 * 9 5 3 11 11 C 1.38240 * 125.79165 * 180.31110 * 2 1 3 12 12 C 1.47394 * 126.45540 * 359.97312 * 11 2 1 13 13 O 1.21611 * 120.00098 * 90.03002 * 12 11 2 14 14 N 1.34776 * 120.00286 * 270.02483 * 12 11 2 15 15 C 1.46507 * 120.00189 * 179.97438 * 14 12 11 16 16 C 1.50691 * 109.46955 * 180.02562 * 15 14 12 17 17 O 1.21289 * 120.00598 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99812 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99947 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00205 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99946 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99727 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00024 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47399 * 60.00022 * 23 21 19 25 25 H 1.48504 * 109.47248 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47131 * 299.99797 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.69165 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.69265 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.69246 * 1 2 3 30 30 H 0.96697 * 116.99973 * 180.02562 * 8 6 5 31 31 H 1.09004 * 109.47071 * 269.97855 * 10 9 5 32 32 H 1.08997 * 109.47151 * 29.97587 * 10 9 5 33 33 H 1.08996 * 109.46734 * 149.97864 * 10 9 5 34 34 H 0.97004 * 120.00075 * 0.02562 * 14 12 11 35 35 H 1.08993 * 109.47050 * 300.00874 * 15 14 12 36 36 H 1.09003 * 109.46283 * 60.00543 * 15 14 12 37 37 H 0.97000 * 119.99969 * 359.97438 * 18 16 15 38 38 H 0.96999 * 119.99365 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2921 1.0888 0.0000 4 1 1.9793 2.0070 -0.0004 5 6 3.6131 0.6955 0.0037 6 6 4.7755 1.5892 0.0085 7 8 5.8995 1.1250 0.0060 8 8 4.5982 2.9262 0.0157 9 6 3.6535 -0.6684 -0.0036 10 6 4.8910 -1.5284 -0.0078 11 6 2.3155 -1.1213 -0.0061 12 6 1.8661 -2.5250 -0.0132 13 8 1.6808 -3.0989 -1.0692 14 7 1.6606 -3.1728 1.1508 15 6 1.2133 -4.5679 1.1437 16 6 1.0596 -5.0532 2.5620 17 8 1.2995 -4.3072 3.4878 18 7 0.6555 -6.3164 2.8019 19 6 0.5152 -6.7579 4.0923 20 1 0.7288 -6.0936 4.9165 21 6 0.0991 -8.0604 4.3396 22 7 -0.1604 -8.8688 3.3366 23 14 -0.0915 -8.6620 6.0977 24 1 -1.0961 -7.8248 6.8013 25 1 -0.5442 -10.0764 6.0905 26 1 1.2138 -8.5632 6.7989 27 1 -0.3633 -0.0055 1.0277 28 1 -0.3633 -0.8872 -0.5186 29 1 -0.3633 0.8928 -0.5091 30 1 5.3946 3.4747 0.0183 31 1 5.1895 -1.7306 -1.0365 32 1 5.6972 -1.0076 0.5087 33 1 4.6813 -2.4691 0.5013 34 1 1.8080 -2.7150 1.9932 35 1 0.2549 -4.6395 0.6296 36 1 1.9499 -5.1828 0.6267 37 1 0.4633 -6.9130 2.0616 38 1 -0.4512 -9.7780 3.5093 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599955397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:23 Heat of formation + Delta-G solvation = -159.705055 kcal Electronic energy + Delta-G solvation = -24655.384716 eV Core-core repulsion = 20689.936316 eV Total energy + Delta-G solvation = -3965.448400 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.86756 -40.93627 -40.52374 -39.62611 -37.18366 -36.21762 -35.23301 -34.14480 -33.36283 -32.80805 -29.78143 -28.74047 -28.02875 -26.52162 -24.35155 -22.95773 -21.35288 -20.96307 -20.46783 -20.02590 -19.70352 -18.47164 -17.99221 -17.24451 -17.09871 -16.83520 -16.79376 -16.29042 -16.16058 -15.68338 -15.50899 -15.25437 -14.78940 -14.52900 -14.32227 -14.12032 -13.90804 -13.82197 -13.52495 -13.47972 -13.29064 -13.24011 -12.88680 -12.68383 -12.62120 -12.45047 -12.12719 -11.71163 -11.54389 -11.23208 -10.54055 -10.20012 -10.06322 -9.99044 -9.35591 -8.49075 -5.99061 0.06973 1.06673 1.39253 1.44047 1.45970 1.54755 1.76067 1.89614 1.93503 2.01206 2.25937 2.42345 3.15295 3.18238 3.65080 3.78875 3.87255 4.09309 4.26477 4.36043 4.41371 4.46109 4.48816 4.66101 4.67868 4.71704 4.94031 5.03807 5.11336 5.26878 5.34869 5.40225 5.55497 5.61114 5.93728 6.31644 6.47345 6.53928 6.90559 7.05519 7.14782 7.46710 7.97105 8.67631 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.002663 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.217422 B =10513.691808 C =10782.923278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.138 3.862 3 N -0.494 5.494 4 H 0.444 0.556 5 C -0.061 4.061 6 C 0.563 3.437 7 O -0.532 6.532 8 O -0.507 6.507 9 C -0.035 4.035 10 C -0.096 4.096 11 C -0.258 4.258 12 C 0.601 3.399 13 O -0.574 6.574 14 N -0.696 5.696 15 C 0.119 3.881 16 C 0.434 3.566 17 O -0.623 6.623 18 N -0.559 5.559 19 C -0.337 4.337 20 H 0.086 0.914 21 C -0.010 4.010 22 N -0.916 5.916 23 Si 0.996 3.004 24 H -0.269 1.269 25 H -0.272 1.272 26 H -0.271 1.271 27 H 0.100 0.900 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.438 0.562 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.413 0.587 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.399 0.601 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 22.237 -7.980 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.012 3.988 3 N -0.091 5.091 4 H 0.287 0.713 5 C -0.170 4.170 6 C 0.409 3.591 7 O -0.423 6.423 8 O -0.322 6.322 9 C -0.043 4.043 10 C -0.153 4.153 11 C -0.267 4.267 12 C 0.387 3.613 13 O -0.454 6.454 14 N -0.349 5.349 15 C -0.008 4.008 16 C 0.221 3.779 17 O -0.511 6.511 18 N -0.195 5.195 19 C -0.466 4.466 20 H 0.104 0.896 21 C -0.211 4.211 22 N -0.556 5.556 23 Si 0.819 3.181 24 H -0.194 1.194 25 H -0.197 1.197 26 H -0.196 1.196 27 H 0.119 0.881 28 H 0.096 0.904 29 H 0.129 0.871 30 H 0.301 0.699 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.251 0.749 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.233 0.767 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.977 21.942 -8.111 23.582 hybrid contribution 0.397 -0.125 0.716 0.828 sum 3.373 21.817 -7.395 23.282 Atomic orbital electron populations 1.20736 0.84165 1.05590 1.05224 1.21050 0.94906 0.84428 0.98406 1.41385 1.03877 1.09526 1.54333 0.71304 1.18479 0.83094 0.91680 1.23752 1.19242 0.86602 0.81207 0.72023 1.90941 1.25448 1.77490 1.48386 1.84493 1.45022 1.17148 1.85567 1.19747 0.94294 0.91720 0.98542 1.20440 0.93914 0.98045 1.02938 1.19117 0.93721 0.92084 1.21799 1.17547 0.75640 0.85431 0.82637 1.90757 1.53332 1.69156 1.32105 1.45756 1.67273 1.12291 1.09598 1.20842 1.02420 0.83730 0.93847 1.20397 0.83432 0.83032 0.91003 1.90479 1.57723 1.56242 1.46693 1.41836 1.58102 1.10846 1.08709 1.19693 1.44942 0.97220 0.84748 0.89592 1.26109 0.95803 0.95443 1.03733 1.69675 1.45065 1.07902 1.32987 0.84947 0.78900 0.77396 0.76869 1.19406 1.19673 1.19605 0.88120 0.90372 0.87135 0.69897 0.90524 0.89730 0.92137 0.74917 0.88162 0.88816 0.76673 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 10.24 71.24 0.73 -0.59 16 2 C 0.14 2.65 7.20 42.19 0.30 2.95 16 3 N -0.49 -7.56 6.01 -171.72 -1.03 -8.59 16 4 H 0.44 3.41 8.96 -92.71 -0.83 2.58 16 5 C -0.06 -1.31 7.02 39.98 0.28 -1.03 16 6 C 0.56 10.92 8.31 70.01 0.58 11.50 16 7 O -0.53 -13.44 15.48 19.50 0.30 -13.13 16 8 O -0.51 -5.35 13.44 -57.86 -0.78 -6.13 16 9 C -0.04 -0.93 6.21 -19.54 -0.12 -1.05 16 10 C -0.10 -2.58 9.63 71.24 0.69 -1.89 16 11 C -0.26 -7.02 5.89 -20.13 -0.12 -7.14 16 12 C 0.60 19.69 6.99 86.65 0.61 20.30 16 13 O -0.57 -22.19 17.11 -4.07 -0.07 -22.26 16 14 N -0.70 -23.40 5.52 -470.14 -2.60 -26.00 16 15 C 0.12 4.32 6.15 85.63 0.53 4.85 16 16 C 0.43 19.87 7.85 87.65 0.69 20.56 16 17 O -0.62 -32.07 15.24 -3.06 -0.05 -32.11 16 18 N -0.56 -27.88 5.29 -306.99 -1.62 -29.50 16 19 C -0.34 -18.44 9.68 84.04 0.81 -17.63 16 20 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 21 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 22 N -0.92 -48.51 13.05 21.66 0.28 -48.23 16 23 Si 1.00 41.59 29.55 68.60 2.03 43.61 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 1.32 7.93 -2.39 -0.02 1.31 16 29 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.44 0.74 9.11 -74.06 -0.67 0.07 16 31 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.08 2.23 6.41 -2.39 -0.02 2.22 16 33 H 0.06 1.69 8.05 -2.39 -0.02 1.67 16 34 H 0.41 14.05 7.42 -92.71 -0.69 13.37 16 35 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.09 3.27 8.14 -2.39 -0.02 3.26 16 37 H 0.40 19.09 7.90 -92.71 -0.73 18.35 16 38 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -74.60 344.65 0.16 -74.44 By element: Atomic # 1 Polarization: 38.88 SS G_CDS: -1.75 Total: 37.14 kcal Atomic # 6 Polarization: 25.32 SS G_CDS: 5.44 Total: 30.76 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -4.97 Total: -112.31 kcal Atomic # 8 Polarization: -73.04 SS G_CDS: -0.59 Total: -73.63 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -74.60 0.16 -74.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599955397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.265 kcal (2) G-P(sol) polarization free energy of solvation -74.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds