Wall clock time and date at job start Fri Apr 10 2020 18:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29941 * 126.28776 * 2 1 4 4 O 1.21293 * 110.25475 * 180.02562 * 3 2 1 5 5 C 1.33639 * 109.81091 * 359.97438 * 4 3 2 6 6 C 1.50704 * 126.55479 * 179.97438 * 5 4 3 7 7 C 1.53500 * 114.20715 * 300.02726 * 6 5 4 8 8 N 1.47064 * 87.98258 * 139.64977 * 7 6 5 9 9 C 1.34777 * 136.05254 * 152.83886 * 8 7 6 10 10 O 1.21588 * 120.00178 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99964 * 180.02562 * 9 8 7 12 12 C 1.46493 * 119.99864 * 179.73002 * 11 9 8 13 13 C 1.50698 * 109.47082 * 180.02562 * 12 11 9 14 14 O 1.21297 * 119.99729 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00115 * 179.97438 * 13 12 11 16 16 C 1.37102 * 120.00015 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99833 * 0.02562 * 16 15 13 18 18 C 1.38945 * 120.00287 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00541 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99945 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.46998 * 89.99617 * 20 18 16 22 22 H 1.48497 * 109.47122 * 210.00218 * 20 18 16 23 23 H 1.48503 * 109.47023 * 330.00190 * 20 18 16 24 24 C 1.47062 * 87.89009 * 333.10408 * 8 7 6 25 25 N 1.31131 * 106.89826 * 0.23312 * 5 4 3 26 26 H 1.08993 * 109.46810 * 89.98016 * 1 2 3 27 27 H 1.08996 * 109.46689 * 209.97911 * 1 2 3 28 28 H 1.08997 * 109.47155 * 329.97611 * 1 2 3 29 29 H 1.09005 * 113.41424 * 166.83053 * 6 5 4 30 30 H 1.09003 * 113.46173 * 24.87539 * 7 6 5 31 31 H 1.08994 * 113.52479 * 254.44176 * 7 6 5 32 32 H 0.97000 * 119.99339 * 0.02562 * 11 9 8 33 33 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 34 34 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 35 35 H 0.96995 * 120.00114 * 359.97438 * 15 13 12 36 36 H 0.96993 * 120.00299 * 179.97438 * 19 18 16 37 37 H 1.08999 * 113.46994 * 141.67680 * 24 8 7 38 38 H 1.08998 * 113.46627 * 272.11662 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7124 -0.0005 5 6 3.5299 -0.6211 -0.0003 6 6 4.7970 -1.4370 -0.0014 7 6 5.7044 -1.1889 -1.2144 8 7 6.8551 -1.2507 -0.3007 9 6 8.1583 -1.5792 -0.4024 10 8 8.6152 -1.9294 -1.4733 11 7 8.9550 -1.5195 0.6832 12 6 10.3701 -1.8822 0.5740 13 6 11.0325 -1.7314 1.9191 14 8 10.3862 -1.3571 2.8749 15 7 12.3432 -2.0123 2.0601 16 6 12.9460 -1.8745 3.2838 17 1 12.3704 -1.5413 4.1348 18 6 14.2972 -2.1636 3.4291 19 7 14.8749 -2.0321 4.6021 20 14 15.2928 -2.7392 1.9571 21 1 15.8737 -1.5627 1.2617 22 1 16.3865 -3.6319 2.4177 23 1 14.4095 -3.4807 1.0215 24 6 5.9567 -0.8028 0.7740 25 7 2.3031 -1.0841 -0.0048 26 1 -0.3633 0.0004 -1.0276 27 1 -0.3632 -0.8902 0.5135 28 1 -0.3633 0.8897 0.5142 29 1 4.6341 -2.4903 0.2269 30 1 5.5631 -0.2082 -1.6687 31 1 5.6857 -1.9981 -1.9443 32 1 8.5903 -1.2404 1.5376 33 1 10.4554 -2.9168 0.2414 34 1 10.8586 -1.2272 -0.1475 35 1 12.8599 -2.3119 1.2959 36 1 15.8181 -2.2342 4.7036 37 1 6.1516 -1.2850 1.7319 38 1 5.8833 0.2817 0.8546 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001686403404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:29 Heat of formation + Delta-G solvation = 27.826034 kcal Electronic energy + Delta-G solvation = -24130.821047 eV Core-core repulsion = 20205.797356 eV Total energy + Delta-G solvation = -3925.023691 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.127 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.69591 -41.73931 -40.49046 -39.27342 -37.13829 -36.26956 -35.29388 -34.27243 -33.81760 -31.31891 -30.05584 -28.98421 -27.17035 -26.32352 -25.16700 -24.37689 -21.91040 -21.45801 -20.82605 -20.40390 -19.25512 -19.22846 -18.51744 -17.63926 -17.57037 -17.19166 -16.78852 -16.66558 -15.88820 -15.58436 -15.16278 -14.91524 -14.85386 -14.45934 -14.35351 -14.23041 -14.06259 -13.92796 -13.79117 -13.64157 -13.30322 -13.05244 -12.94122 -12.68592 -12.43036 -12.13321 -11.99256 -11.97933 -11.56564 -11.47977 -10.88082 -10.64102 -10.38194 -10.29571 -9.71010 -8.44143 -6.06117 0.00572 1.10644 1.17651 1.32875 1.35713 1.45615 1.69328 1.80523 2.05806 2.21911 2.53662 2.66885 2.96911 3.02410 3.12259 3.12701 3.64184 3.83683 3.98403 4.13701 4.26831 4.40872 4.44990 4.45655 4.48097 4.52185 4.59564 4.66390 4.67247 4.86428 4.96789 5.10593 5.26591 5.50232 5.89485 6.05871 6.50083 6.79525 6.86807 7.08814 7.29145 7.43940 7.79606 8.72157 Molecular weight = 309.13amu Principal moments of inertia in cm(-1) A = 0.037621 B = 0.002184 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.080337 B =12815.385324 C =13337.914036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.163 3.837 3 N -0.407 5.407 4 O 0.075 5.925 5 C 0.205 3.795 6 C -0.019 4.019 7 C 0.140 3.860 8 N -0.668 5.668 9 C 0.742 3.258 10 O -0.623 6.623 11 N -0.723 5.723 12 C 0.138 3.862 13 C 0.446 3.554 14 O -0.614 6.614 15 N -0.578 5.578 16 C -0.330 4.330 17 H 0.064 0.936 18 C -0.009 4.009 19 N -0.926 5.926 20 Si 0.958 3.042 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.231 1.231 24 C 0.107 3.893 25 N -0.492 5.492 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.168 0.832 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.410 0.590 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.392 0.608 36 H 0.281 0.719 37 H 0.105 0.895 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.603 1.044 -13.849 28.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 N -0.117 5.117 4 O 0.018 5.982 5 C -0.016 4.016 6 C -0.039 4.039 7 C 0.017 3.983 8 N -0.407 5.407 9 C 0.445 3.555 10 O -0.504 6.504 11 N -0.380 5.380 12 C 0.010 3.990 13 C 0.234 3.766 14 O -0.500 6.500 15 N -0.218 5.218 16 C -0.459 4.459 17 H 0.082 0.918 18 C -0.209 4.209 19 N -0.566 5.566 20 Si 0.778 3.222 21 H -0.182 1.182 22 H -0.199 1.199 23 H -0.154 1.154 24 C -0.016 4.016 25 N -0.226 5.226 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.185 0.815 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.247 0.753 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.228 0.772 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -24.886 1.481 -13.860 28.524 hybrid contribution 1.042 -0.033 0.283 1.080 sum -23.843 1.448 -13.577 27.476 Atomic orbital electron populations 1.20363 0.80477 1.05796 1.05610 1.26641 1.02160 0.82907 0.99221 1.74678 0.89697 1.24633 1.22736 1.85269 1.22289 1.24852 1.65766 1.28385 0.96294 0.81898 0.95014 1.21589 0.82762 0.99773 0.99817 1.22988 0.77877 1.04480 0.92993 1.48283 1.05815 1.70863 1.15722 1.15019 0.79117 0.78126 0.83282 1.90906 1.73974 1.57023 1.28506 1.44640 1.08921 1.72435 1.11994 1.20731 0.80962 1.03527 0.93797 1.20488 0.82580 0.82684 0.90886 1.90525 1.64170 1.52571 1.42732 1.41913 1.08888 1.60507 1.10448 1.19024 0.94059 1.45129 0.87708 0.91803 1.26065 0.97313 0.96672 1.00806 1.69776 1.13151 1.48213 1.25446 0.85449 0.78988 0.79582 0.78134 1.18169 1.19948 1.15445 1.23206 0.83137 1.01807 0.93443 1.71929 1.00068 1.29825 1.20811 0.87800 0.87835 0.88486 0.81465 0.88016 0.88098 0.75285 0.87801 0.87852 0.77194 0.90959 0.87641 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.51 71.24 0.75 0.20 16 2 C 0.16 2.72 8.22 138.47 1.14 3.86 16 3 N -0.41 -7.96 12.16 -60.35 -0.73 -8.69 16 4 O 0.07 1.30 11.02 74.88 0.82 2.13 16 5 C 0.21 3.01 7.59 88.38 0.67 3.68 16 6 C -0.02 -0.20 4.62 -11.29 -0.05 -0.25 16 7 C 0.14 1.87 8.19 83.18 0.68 2.55 16 8 N -0.67 -13.13 3.69 -877.04 -3.24 -16.37 16 9 C 0.74 21.11 8.79 179.05 1.57 22.69 16 10 O -0.62 -21.82 17.12 -3.99 -0.07 -21.89 16 11 N -0.72 -21.44 5.53 -482.29 -2.67 -24.11 16 12 C 0.14 4.38 6.15 85.63 0.53 4.91 16 13 C 0.45 18.91 7.85 87.66 0.69 19.60 16 14 O -0.61 -30.80 15.24 -3.08 -0.05 -30.84 16 15 N -0.58 -25.98 5.09 -306.98 -1.56 -27.55 16 16 C -0.33 -18.47 10.16 84.04 0.85 -17.62 16 17 H 0.06 4.22 7.39 -2.91 -0.02 4.20 16 18 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 19 N -0.93 -53.97 13.96 21.66 0.30 -53.67 16 20 Si 0.96 37.61 27.74 68.60 1.90 39.51 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.23 -7.68 6.52 99.48 0.65 -7.04 16 24 C 0.11 1.39 7.84 83.10 0.65 2.04 16 25 N -0.49 -8.54 11.55 -303.22 -3.50 -12.04 16 26 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.17 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.41 12.13 7.15 -92.71 -0.66 11.47 16 33 H 0.10 2.98 8.14 -2.38 -0.02 2.96 16 34 H 0.10 2.98 8.14 -2.38 -0.02 2.96 16 35 H 0.39 14.76 5.76 -92.71 -0.53 14.23 16 36 H 0.28 14.97 8.31 -92.71 -0.77 14.20 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.11 1.22 7.85 -2.39 -0.02 1.20 16 Total: -1.00 -78.91 338.96 -0.96 -79.87 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: -0.12 Total: 31.99 kcal Atomic # 6 Polarization: 33.71 SS G_CDS: 7.95 Total: 41.66 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -11.40 Total: -142.43 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: 0.71 Total: -50.60 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 1.90 Total: 39.51 kcal Total: -78.91 -0.96 -79.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686403404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.694 kcal (2) G-P(sol) polarization free energy of solvation -78.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds