Wall clock time and date at job start Fri Apr 10 2020 18:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99858 * 2 1 4 4 C 1.52999 * 109.47469 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47112 * 59.99707 * 4 3 2 6 6 O 1.42904 * 109.46854 * 299.99994 * 4 3 2 7 7 C 1.53003 * 109.47503 * 180.02562 * 4 3 2 8 8 N 1.46496 * 109.47208 * 184.99738 * 7 4 3 9 9 C 1.34773 * 119.99950 * 179.97438 * 8 7 4 10 10 O 1.21592 * 120.00358 * 0.02562 * 9 8 7 11 11 C 1.47536 * 120.00250 * 180.02562 * 9 8 7 12 12 C 1.39673 * 120.19308 * 0.27711 * 11 9 8 13 13 C 1.37829 * 119.91662 * 180.30027 * 12 11 9 14 14 C 1.38573 * 120.32162 * 359.69830 * 13 12 11 15 15 C 1.38023 * 120.40656 * 0.02562 * 14 13 12 16 16 C 1.38834 * 120.06654 * 0.02562 * 15 14 13 17 17 O 1.35526 * 120.15695 * 179.97438 * 16 15 14 18 18 C 1.34813 * 117.00333 * 5.59555 * 17 16 15 19 19 H 1.08003 * 119.99735 * 354.93364 * 18 17 16 20 20 C 1.38696 * 119.99881 * 174.93689 * 18 17 16 21 21 N 1.31516 * 120.00523 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99750 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47507 * 59.99568 * 22 20 18 24 24 H 1.48492 * 109.47109 * 179.97438 * 22 20 18 25 25 H 1.48509 * 109.46909 * 299.99839 * 22 20 18 26 26 H 1.08999 * 109.47214 * 60.00390 * 1 2 3 27 27 H 1.09000 * 109.46834 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47653 * 300.00069 * 1 2 3 29 29 H 1.09006 * 109.47430 * 59.99936 * 3 2 1 30 30 H 1.09002 * 109.47462 * 299.99879 * 3 2 1 31 31 H 1.09004 * 109.47000 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.47003 * 300.00639 * 5 4 3 33 33 H 1.09002 * 109.46712 * 60.00669 * 5 4 3 34 34 H 0.96698 * 113.99858 * 300.00099 * 6 4 3 35 35 H 1.08997 * 109.46877 * 64.99594 * 7 4 3 36 36 H 1.09006 * 109.46863 * 304.99964 * 7 4 3 37 37 H 0.96999 * 120.00188 * 0.02562 * 8 7 4 38 38 H 1.07997 * 120.04439 * 0.02562 * 12 11 9 39 39 H 1.07997 * 119.83927 * 179.72258 * 13 12 11 40 40 H 1.08006 * 119.79576 * 180.02562 * 14 13 12 41 41 H 1.07998 * 119.96858 * 180.02562 * 15 14 13 42 42 H 0.97001 * 120.00147 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 3.9874 0.4253 -1.2483 6 8 3.9566 0.4759 1.1678 7 6 4.1577 2.5825 0.0013 8 7 5.6133 2.4691 -0.1184 9 6 6.3763 3.5798 -0.1397 10 8 5.8566 4.6761 -0.0592 11 6 7.8423 3.4657 -0.2609 12 6 8.4432 2.2087 -0.3595 13 6 9.8137 2.1084 -0.4662 14 6 10.5995 3.2496 -0.4824 15 6 10.0193 4.4987 -0.3915 16 6 8.6404 4.6188 -0.2824 17 8 8.0688 5.8444 -0.1925 18 6 8.8819 6.9107 -0.3312 19 1 9.9485 6.7681 -0.4234 20 6 8.3487 8.1909 -0.3553 21 7 7.0499 8.3645 -0.2433 22 14 9.4753 9.6684 -0.5482 23 1 10.2143 9.5632 -1.8319 24 1 8.6649 10.9126 -0.5445 25 1 10.4425 9.7037 0.5782 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 5.0740 0.3389 -1.2475 32 1 3.5441 -0.5705 -1.2482 33 1 3.6662 0.9661 -2.1385 34 1 3.7036 0.9008 1.9987 35 1 3.9082 3.0908 0.9326 36 1 3.7673 3.1544 -0.8406 37 1 6.0280 1.5946 -0.1831 38 1 7.8351 1.3162 -0.3477 39 1 10.2773 1.1357 -0.5378 40 1 11.6726 3.1612 -0.5667 41 1 10.6384 5.3835 -0.4053 42 1 6.6770 9.2598 -0.2606 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743770733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:26 Heat of formation + Delta-G solvation = -154.192700 kcal Electronic energy + Delta-G solvation = -25569.091697 eV Core-core repulsion = 21707.422674 eV Total energy + Delta-G solvation = -3861.669023 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.36536 -40.35728 -39.39726 -38.02827 -37.76826 -35.31763 -34.31565 -32.96997 -31.77646 -30.56429 -28.42409 -28.00291 -27.29871 -26.11420 -24.31260 -23.02941 -21.59992 -21.43036 -19.85435 -19.41030 -18.28427 -17.87881 -17.18483 -17.04209 -16.71540 -16.33740 -16.29468 -16.01373 -15.71320 -15.61527 -15.43777 -15.25661 -14.97861 -14.40952 -14.31037 -14.09271 -13.71383 -13.54263 -13.30679 -13.06168 -12.94235 -12.76314 -12.67181 -12.49837 -12.45080 -12.35526 -12.14666 -11.69213 -11.43485 -11.12166 -10.81738 -10.66333 -10.61224 -10.13032 -9.78321 -9.03338 -8.43888 -6.14734 0.12440 0.73092 1.32927 1.45759 1.50559 2.07814 2.09590 2.16720 2.81421 2.88208 3.22518 3.29017 3.46831 3.66621 3.75845 3.84816 3.99837 4.08850 4.28693 4.30311 4.37867 4.51636 4.53942 4.55932 4.57458 4.66310 4.75166 4.86089 4.89528 4.96446 4.98513 5.08013 5.14305 5.26505 5.48009 5.49585 5.61255 5.70036 5.96670 6.15437 6.17047 6.64406 6.74892 6.95381 7.46075 7.80773 8.76375 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.017017 B = 0.003389 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.986910 B = 8259.630530 C = 9698.612643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.396 6.396 3 C 0.038 3.962 4 C 0.138 3.862 5 C -0.137 4.137 6 O -0.556 6.556 7 C 0.100 3.900 8 N -0.710 5.710 9 C 0.549 3.451 10 O -0.568 6.568 11 C -0.245 4.245 12 C -0.031 4.031 13 C -0.201 4.201 14 C -0.039 4.039 15 C -0.257 4.257 16 C 0.149 3.851 17 O -0.187 6.187 18 C -0.429 4.429 19 H 0.107 0.893 20 C -0.021 4.021 21 N -0.905 5.905 22 Si 1.021 2.979 23 H -0.255 1.255 24 H -0.273 1.273 25 H -0.254 1.254 26 H 0.049 0.951 27 H 0.098 0.902 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.388 0.612 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.411 0.589 38 H 0.155 0.845 39 H 0.163 0.837 40 H 0.155 0.845 41 H 0.124 0.876 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.217 -17.897 -0.581 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.039 4.039 4 C 0.096 3.904 5 C -0.194 4.194 6 O -0.363 6.363 7 C -0.025 4.025 8 N -0.366 5.366 9 C 0.339 3.661 10 O -0.447 6.447 11 C -0.249 4.249 12 C -0.049 4.049 13 C -0.219 4.219 14 C -0.057 4.057 15 C -0.277 4.277 16 C 0.094 3.906 17 O -0.090 6.090 18 C -0.505 4.505 19 H 0.124 0.876 20 C -0.220 4.220 21 N -0.540 5.540 22 Si 0.840 3.160 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.178 1.178 26 H 0.067 0.933 27 H 0.116 0.884 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.237 0.763 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.250 0.750 38 H 0.172 0.828 39 H 0.181 0.819 40 H 0.172 0.828 41 H 0.142 0.858 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.674 -17.439 -0.917 18.362 hybrid contribution -0.175 1.513 0.419 1.580 sum -5.850 -15.926 -0.498 16.973 Atomic orbital electron populations 1.22949 0.79638 1.03870 1.00777 1.87889 1.21060 1.27016 1.95552 1.23100 0.92918 0.85619 1.02283 1.21289 0.91445 0.89222 0.88434 1.21700 1.02094 1.01299 0.94314 1.86544 1.81284 1.52475 1.15991 1.21864 0.80832 0.97504 1.02286 1.45512 1.06392 1.08507 1.76169 1.18514 0.87478 0.83999 0.76150 1.90927 1.75087 1.28335 1.50350 1.19264 0.91849 0.93210 1.20606 1.21274 0.96127 0.93984 0.93514 1.21169 0.92829 0.99527 1.08379 1.21433 1.01145 0.90771 0.92400 1.21309 0.93144 1.00148 1.13055 1.20068 0.92780 0.86344 0.91378 1.84176 1.36931 1.11127 1.76764 1.22001 0.91392 0.83942 1.53126 0.87622 1.26739 0.98258 1.01445 0.95604 1.70309 1.13332 1.23778 1.46612 0.84633 0.76819 0.74541 0.80039 1.17872 1.19786 1.17824 0.93283 0.88364 0.93345 0.91713 0.91291 0.91616 0.90654 0.90437 0.76252 0.92055 0.91624 0.75012 0.82767 0.81929 0.82787 0.85792 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -7.72 9.92 -139.79 -1.39 -9.11 16 3 C 0.04 0.70 5.03 71.98 0.36 1.06 16 4 C 0.14 2.88 0.85 -10.79 -0.01 2.87 16 5 C -0.14 -2.70 8.47 71.98 0.61 -2.09 16 6 O -0.56 -11.79 12.82 -139.79 -1.79 -13.58 16 7 C 0.10 2.78 4.82 86.38 0.42 3.20 16 8 N -0.71 -22.76 5.14 -466.27 -2.40 -25.16 16 9 C 0.55 24.97 7.76 86.70 0.67 25.65 16 10 O -0.57 -33.25 15.17 16.89 0.26 -32.99 16 11 C -0.24 -10.75 5.89 -19.99 -0.12 -10.87 16 12 C -0.03 -0.95 9.54 22.52 0.21 -0.74 16 13 C -0.20 -5.50 10.03 22.25 0.22 -5.28 16 14 C -0.04 -1.24 10.03 22.30 0.22 -1.01 16 15 C -0.26 -11.05 9.16 22.36 0.20 -10.84 16 16 C 0.15 7.75 6.66 22.90 0.15 7.90 16 17 O -0.19 -11.95 7.84 0.78 0.01 -11.94 16 18 C -0.43 -25.95 9.49 67.93 0.64 -25.31 16 19 H 0.11 5.73 5.21 -2.91 -0.02 5.71 16 20 C -0.02 -1.25 5.49 84.85 0.47 -0.79 16 21 N -0.90 -58.93 13.67 21.62 0.30 -58.64 16 22 Si 1.02 44.09 29.55 68.60 2.03 46.12 16 23 H -0.25 -10.21 7.11 99.48 0.71 -9.51 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 25 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.25 6.58 -2.38 -0.02 1.23 16 32 H 0.07 1.49 7.68 -2.39 -0.02 1.47 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.39 6.19 9.04 -74.06 -0.67 5.53 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.41 10.56 5.02 -92.71 -0.47 10.10 16 38 H 0.15 3.46 6.40 -2.91 -0.02 3.44 16 39 H 0.16 2.96 8.06 -2.91 -0.02 2.93 16 40 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 41 H 0.12 5.37 5.64 -2.91 -0.02 5.36 16 42 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -87.82 354.77 2.25 -85.57 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -0.07 Total: 34.40 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 5.31 Total: -14.68 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -2.10 Total: -83.80 kcal Atomic # 8 Polarization: -64.70 SS G_CDS: -2.92 Total: -67.62 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -87.82 2.25 -85.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743770733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.620 kcal (2) G-P(sol) polarization free energy of solvation -87.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds