Wall clock time and date at job start Fri Apr 10 2020 18:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38125 * 126.29451 * 2 1 4 4 C 1.47279 * 126.42820 * 0.06266 * 3 2 1 5 5 O 1.21525 * 120.00348 * 0.02562 * 4 3 2 6 6 O 1.34755 * 119.99994 * 179.97438 * 4 3 2 7 7 C 1.45208 * 117.00106 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.46927 * 180.02562 * 7 6 4 9 9 O 1.21291 * 120.00247 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99647 * 180.02562 * 8 7 6 11 11 C 1.37098 * 120.00013 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99757 * 359.97438 * 11 10 8 13 13 C 1.38947 * 120.00091 * 179.97438 * 11 10 8 14 14 N 1.31408 * 119.99982 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00008 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47269 * 89.99865 * 15 13 11 17 17 H 1.48503 * 109.47126 * 209.99891 * 15 13 11 18 18 H 1.48504 * 109.47167 * 329.99780 * 15 13 11 19 19 C 1.41344 * 107.14179 * 180.02562 * 3 2 1 20 20 N 1.30426 * 108.01776 * 359.72198 * 19 3 2 21 21 N 1.34222 * 126.29306 * 180.02562 * 2 1 3 22 22 C 1.46494 * 125.74816 * 359.96550 * 21 2 1 23 23 C 1.52997 * 109.47140 * 90.00690 * 22 21 2 24 24 C 1.53006 * 109.47164 * 295.00115 * 23 22 21 25 25 C 1.52999 * 109.47269 * 175.00611 * 23 22 21 26 26 H 1.09005 * 109.46814 * 269.97006 * 1 2 3 27 27 H 1.08997 * 109.47390 * 29.96788 * 1 2 3 28 28 H 1.08995 * 109.47127 * 149.97408 * 1 2 3 29 29 H 1.09000 * 109.47020 * 300.00073 * 7 6 4 30 30 H 1.08995 * 109.46758 * 59.99950 * 7 6 4 31 31 H 0.96998 * 119.99860 * 359.97438 * 10 8 7 32 32 H 0.97003 * 119.99935 * 180.02562 * 14 13 11 33 33 H 1.08007 * 125.99048 * 179.97438 * 19 3 2 34 34 H 1.09006 * 109.47118 * 330.00345 * 22 21 2 35 35 H 1.09001 * 109.47722 * 210.00909 * 22 21 2 36 36 H 1.09000 * 109.47140 * 55.00064 * 23 22 21 37 37 H 1.09001 * 109.47002 * 59.99738 * 24 23 22 38 38 H 1.08993 * 109.46955 * 180.02562 * 24 23 22 39 39 H 1.09000 * 109.47050 * 300.00004 * 24 23 22 40 40 H 1.09001 * 109.47362 * 180.02562 * 25 23 22 41 41 H 1.09002 * 109.46716 * 299.99747 * 25 23 22 42 42 H 1.09000 * 109.47486 * 59.99665 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8872 2.5196 0.0013 5 8 0.7018 2.7873 0.0030 6 8 2.8015 3.5096 0.0017 7 6 2.2982 4.8717 0.0035 8 6 3.4570 5.8352 0.0030 9 8 4.5949 5.4154 0.0017 10 7 3.2287 7.1635 0.0051 11 6 4.2828 8.0402 0.0051 12 1 5.2960 7.6663 0.0040 13 6 4.0476 9.4096 0.0067 14 7 5.0579 10.2498 0.0073 15 14 2.2951 10.0562 0.0094 16 1 1.8323 10.2262 1.4102 17 1 2.2495 11.3657 -0.6894 18 1 1.4101 9.0906 -0.6905 19 6 3.6598 0.6495 -0.0006 20 7 3.6340 -0.6544 0.0051 21 7 2.3015 -1.0818 -0.0005 22 6 1.8498 -2.4754 -0.0004 23 6 1.6920 -2.9605 -1.4428 24 6 0.5729 -2.1722 -2.1265 25 6 1.3413 -4.4497 -1.4446 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5133 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6896 5.0354 -0.8858 30 1 1.6911 5.0334 0.8941 31 1 2.3187 7.4993 0.0065 32 1 4.8937 11.2058 0.0087 33 1 4.5461 1.2668 -0.0012 34 1 0.8913 -2.5467 0.5139 35 1 2.5845 -3.0956 0.5132 36 1 2.6266 -2.8066 -1.9822 37 1 0.8227 -1.1112 -2.1251 38 1 0.4602 -2.5181 -3.1539 39 1 -0.3617 -2.3262 -1.5871 40 1 1.2293 -4.7954 -2.4723 41 1 2.1386 -5.0113 -0.9576 42 1 0.4067 -4.6036 -0.9053 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767026916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:48 Heat of formation + Delta-G solvation = -50.411175 kcal Electronic energy + Delta-G solvation = -24943.649830 eV Core-core repulsion = 21118.773863 eV Total energy + Delta-G solvation = -3824.875967 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.77948 -39.86329 -38.20623 -37.02618 -35.99291 -34.00436 -32.84456 -32.06563 -31.74269 -29.01951 -27.93791 -27.29389 -26.67523 -24.49249 -22.83677 -21.74392 -20.34107 -19.69240 -19.50126 -18.50088 -17.88275 -16.54875 -16.41936 -16.25580 -15.86669 -15.53410 -15.06713 -14.74835 -14.64193 -14.23166 -13.77269 -13.67917 -13.51375 -13.37448 -13.19471 -12.89683 -12.80704 -12.62958 -12.34223 -12.27353 -12.18887 -12.09180 -11.70494 -11.54325 -11.24835 -11.22450 -10.98152 -10.61200 -10.39415 -10.25819 -10.00597 -9.62660 -9.58625 -8.85552 -8.60066 -8.24393 -6.34787 -3.87358 1.20948 1.99000 2.02609 2.86107 3.02399 3.06914 3.15384 3.23580 3.62518 4.03860 4.07910 4.15449 4.24199 4.43777 4.46591 4.61198 4.70440 4.83046 4.99483 5.03339 5.06918 5.11814 5.16388 5.21534 5.30358 5.32055 5.38131 5.46859 5.54218 5.61189 5.63875 5.69565 5.73797 5.78871 5.81608 6.31408 6.57293 6.68327 7.38140 7.50286 8.00364 8.07253 8.53261 8.88754 9.35021 9.71598 10.77624 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.035763 B = 0.002440 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.737153 B =11470.578100 C =11956.811675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.167 3.833 3 C -0.282 4.282 4 C 0.543 3.457 5 O -0.527 6.527 6 O -0.320 6.320 7 C 0.061 3.939 8 C 0.449 3.551 9 O -0.556 6.556 10 N -0.581 5.581 11 C -0.306 4.306 12 H 0.122 0.878 13 C 0.044 3.956 14 N -0.876 5.876 15 Si 0.879 3.121 16 H -0.269 1.269 17 H -0.275 1.275 18 H -0.268 1.268 19 C 0.111 3.889 20 N -0.301 5.301 21 N -0.357 5.357 22 C 0.132 3.868 23 C -0.115 4.115 24 C -0.159 4.159 25 C -0.145 4.145 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.373 0.627 32 H 0.275 0.725 33 H 0.202 0.798 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.651 -26.728 -1.357 30.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.034 3.966 3 C -0.294 4.294 4 C 0.388 3.612 5 O -0.419 6.419 6 O -0.234 6.234 7 C -0.017 4.017 8 C 0.234 3.766 9 O -0.438 6.438 10 N -0.222 5.222 11 C -0.435 4.435 12 H 0.140 0.860 13 C -0.160 4.160 14 N -0.516 5.516 15 Si 0.705 3.295 16 H -0.194 1.194 17 H -0.200 1.200 18 H -0.193 1.193 19 C -0.077 4.077 20 N -0.119 5.119 21 N -0.136 5.136 22 C 0.011 3.989 23 C -0.134 4.134 24 C -0.216 4.216 25 C -0.202 4.202 26 H 0.106 0.894 27 H 0.125 0.875 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.206 0.794 32 H 0.085 0.915 33 H 0.219 0.781 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.429 -27.901 -1.344 30.573 hybrid contribution -1.823 1.611 0.000 2.433 sum -14.252 -26.289 -1.344 29.934 Atomic orbital electron populations 1.21012 0.86117 1.05573 1.04482 1.21405 0.94772 0.86230 0.94201 1.19029 0.93619 0.90224 1.26572 1.19969 0.83667 0.85294 0.72220 1.90765 1.17988 1.84749 1.48350 1.86596 1.38201 1.15125 1.83525 1.22707 0.96721 0.78749 1.03528 1.19228 0.89405 0.82706 0.85230 1.90601 1.22685 1.77132 1.53339 1.42035 1.08593 1.04735 1.66805 1.19423 0.89264 0.86302 1.48479 0.86021 1.25035 0.97947 0.95623 0.97386 1.69616 1.30299 1.03016 1.48662 0.86677 0.84110 0.79650 0.79057 1.19446 1.20026 1.19328 1.24341 0.97747 0.91390 0.94215 1.77272 0.95544 1.13327 1.25762 1.48509 1.04170 1.05883 1.55036 1.21961 1.01299 0.77256 0.98417 1.21555 1.00729 0.96199 0.94906 1.22130 0.97747 1.00669 1.01061 1.21775 1.01826 0.93905 1.02733 0.89447 0.87484 0.90037 0.89474 0.89450 0.79411 0.91457 0.78121 0.88598 0.88078 0.89880 0.92050 0.91867 0.91961 0.91753 0.92118 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 8.73 36.01 0.31 -0.64 16 2 C 0.17 1.88 5.76 -81.59 -0.47 1.41 16 3 C -0.28 -3.99 6.13 -105.08 -0.64 -4.64 16 4 C 0.54 8.91 7.95 34.41 0.27 9.18 16 5 O -0.53 -8.86 14.63 -19.29 -0.28 -9.15 16 6 O -0.32 -5.97 9.60 -47.32 -0.45 -6.43 16 7 C 0.06 1.11 5.95 36.01 0.21 1.33 16 8 C 0.45 10.53 7.86 -10.98 -0.09 10.45 16 9 O -0.56 -15.39 16.08 -14.11 -0.23 -15.62 16 10 N -0.58 -13.94 5.09 -10.96 -0.06 -14.00 16 11 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 12 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 13 C 0.04 1.19 5.50 -17.47 -0.10 1.10 16 14 N -0.88 -25.39 13.96 55.50 0.77 -24.62 16 15 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 18 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 19 C 0.11 1.52 11.87 -16.97 -0.20 1.32 16 20 N -0.30 -3.91 12.50 30.87 0.39 -3.52 16 21 N -0.36 -3.72 3.41 -56.59 -0.19 -3.91 16 22 C 0.13 0.84 5.55 -4.05 -0.02 0.82 16 23 C -0.11 -0.65 3.13 -90.62 -0.28 -0.94 16 24 C -0.16 -0.93 7.58 37.16 0.28 -0.65 16 25 C -0.14 -0.54 9.19 37.16 0.34 -0.20 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.11 1.07 6.51 -51.93 -0.34 0.73 16 28 H 0.08 0.46 4.38 -51.93 -0.23 0.24 16 29 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 32 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.20 2.58 8.06 -52.48 -0.42 2.15 16 34 H 0.10 0.41 7.62 -51.93 -0.40 0.01 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.49 5.89 -51.93 -0.31 0.18 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.27 6.85 -51.93 -0.36 -0.09 16 40 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -34.88 353.13 -5.62 -40.49 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.64 Total: 7.18 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -0.53 Total: 9.75 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.91 Total: -46.05 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.96 Total: -31.19 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.88 -5.62 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767026916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.920 kcal (2) G-P(sol) polarization free energy of solvation -34.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds