Wall clock time and date at job start Fri Apr 10 2020 18:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38125 * 126.29451 * 2 1 4 4 C 1.47279 * 126.42820 * 0.06266 * 3 2 1 5 5 O 1.21525 * 120.00348 * 0.02562 * 4 3 2 6 6 O 1.34755 * 119.99994 * 179.97438 * 4 3 2 7 7 C 1.45208 * 117.00106 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.46927 * 180.02562 * 7 6 4 9 9 O 1.21291 * 120.00247 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99647 * 180.02562 * 8 7 6 11 11 C 1.37098 * 120.00013 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99757 * 359.97438 * 11 10 8 13 13 C 1.38947 * 120.00091 * 179.97438 * 11 10 8 14 14 N 1.31408 * 119.99982 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00008 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47269 * 89.99865 * 15 13 11 17 17 H 1.48503 * 109.47126 * 209.99891 * 15 13 11 18 18 H 1.48504 * 109.47167 * 329.99780 * 15 13 11 19 19 C 1.41344 * 107.14179 * 180.02562 * 3 2 1 20 20 N 1.30426 * 108.01776 * 359.72198 * 19 3 2 21 21 N 1.34222 * 126.29306 * 180.02562 * 2 1 3 22 22 C 1.46494 * 125.74816 * 359.96550 * 21 2 1 23 23 C 1.52997 * 109.47140 * 90.00690 * 22 21 2 24 24 C 1.53006 * 109.47164 * 295.00115 * 23 22 21 25 25 C 1.52999 * 109.47269 * 175.00611 * 23 22 21 26 26 H 1.09005 * 109.46814 * 269.97006 * 1 2 3 27 27 H 1.08997 * 109.47390 * 29.96788 * 1 2 3 28 28 H 1.08995 * 109.47127 * 149.97408 * 1 2 3 29 29 H 1.09000 * 109.47020 * 300.00073 * 7 6 4 30 30 H 1.08995 * 109.46758 * 59.99950 * 7 6 4 31 31 H 0.96998 * 119.99860 * 359.97438 * 10 8 7 32 32 H 0.97003 * 119.99935 * 180.02562 * 14 13 11 33 33 H 1.08007 * 125.99048 * 179.97438 * 19 3 2 34 34 H 1.09006 * 109.47118 * 330.00345 * 22 21 2 35 35 H 1.09001 * 109.47722 * 210.00909 * 22 21 2 36 36 H 1.09000 * 109.47140 * 55.00064 * 23 22 21 37 37 H 1.09001 * 109.47002 * 59.99738 * 24 23 22 38 38 H 1.08993 * 109.46955 * 180.02562 * 24 23 22 39 39 H 1.09000 * 109.47050 * 300.00004 * 24 23 22 40 40 H 1.09001 * 109.47362 * 180.02562 * 25 23 22 41 41 H 1.09002 * 109.46716 * 299.99747 * 25 23 22 42 42 H 1.09000 * 109.47486 * 59.99665 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8872 2.5196 0.0013 5 8 0.7018 2.7873 0.0030 6 8 2.8015 3.5096 0.0017 7 6 2.2982 4.8717 0.0035 8 6 3.4570 5.8352 0.0030 9 8 4.5949 5.4154 0.0017 10 7 3.2287 7.1635 0.0051 11 6 4.2828 8.0402 0.0051 12 1 5.2960 7.6663 0.0040 13 6 4.0476 9.4096 0.0067 14 7 5.0579 10.2498 0.0073 15 14 2.2951 10.0562 0.0094 16 1 1.8323 10.2262 1.4102 17 1 2.2495 11.3657 -0.6894 18 1 1.4101 9.0906 -0.6905 19 6 3.6598 0.6495 -0.0006 20 7 3.6340 -0.6544 0.0051 21 7 2.3015 -1.0818 -0.0005 22 6 1.8498 -2.4754 -0.0004 23 6 1.6920 -2.9605 -1.4428 24 6 0.5729 -2.1722 -2.1265 25 6 1.3413 -4.4497 -1.4446 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5133 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6896 5.0354 -0.8858 30 1 1.6911 5.0334 0.8941 31 1 2.3187 7.4993 0.0065 32 1 4.8937 11.2058 0.0087 33 1 4.5461 1.2668 -0.0012 34 1 0.8913 -2.5467 0.5139 35 1 2.5845 -3.0956 0.5132 36 1 2.6266 -2.8066 -1.9822 37 1 0.8227 -1.1112 -2.1251 38 1 0.4602 -2.5181 -3.1539 39 1 -0.3617 -2.3262 -1.5871 40 1 1.2293 -4.7954 -2.4723 41 1 2.1386 -5.0113 -0.9576 42 1 0.4067 -4.6036 -0.9053 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767026916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:47 Heat of formation + Delta-G solvation = -74.118761 kcal Electronic energy + Delta-G solvation = -24944.677868 eV Core-core repulsion = 21118.773863 eV Total energy + Delta-G solvation = -3825.904005 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.71164 -41.22534 -40.04548 -37.58603 -37.35871 -36.06096 -33.85204 -33.63821 -32.89156 -30.42335 -28.82137 -27.89715 -27.34344 -26.37676 -24.00376 -22.51699 -21.51799 -21.19973 -20.57345 -20.35245 -19.00282 -17.77635 -17.68262 -17.63542 -17.01041 -16.75513 -16.57050 -15.72222 -15.66046 -15.46169 -15.32179 -14.71975 -14.60954 -14.28610 -14.20427 -13.90290 -13.87324 -13.82354 -13.63508 -13.46939 -13.02158 -12.98512 -12.76997 -12.44559 -12.26752 -11.99844 -11.97871 -11.90291 -11.78483 -11.70146 -11.56864 -11.43192 -10.58102 -10.42819 -10.32556 -9.83553 -8.44614 -6.07650 0.24407 0.93860 1.14908 1.31521 1.35042 1.45041 1.62152 1.78010 2.09329 2.21783 2.87299 3.09799 3.42702 3.48260 3.69892 3.79090 3.79812 3.92819 4.01051 4.10584 4.16432 4.19701 4.35599 4.44728 4.54027 4.57528 4.64318 4.76970 4.78546 4.90959 4.98029 5.03592 5.18098 5.26305 5.33536 5.36781 5.41222 5.50751 5.82642 5.86937 6.41067 6.49464 6.74749 6.81146 7.27518 7.80049 8.72088 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.035763 B = 0.002440 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.737153 B =11470.578100 C =11956.811675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.183 3.817 3 C -0.316 4.316 4 C 0.544 3.456 5 O -0.533 6.533 6 O -0.344 6.344 7 C 0.071 3.929 8 C 0.449 3.551 9 O -0.608 6.608 10 N -0.576 5.576 11 C -0.332 4.332 12 H 0.060 0.940 13 C -0.010 4.010 14 N -0.926 5.926 15 Si 0.963 3.037 16 H -0.255 1.255 17 H -0.272 1.272 18 H -0.231 1.231 19 C 0.099 3.901 20 N -0.318 5.318 21 N -0.347 5.347 22 C 0.120 3.880 23 C -0.109 4.109 24 C -0.160 4.160 25 C -0.140 4.140 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.393 0.607 32 H 0.282 0.718 33 H 0.196 0.804 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.116 -28.503 -1.143 33.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.049 3.951 3 C -0.329 4.329 4 C 0.392 3.608 5 O -0.424 6.424 6 O -0.259 6.259 7 C -0.006 4.006 8 C 0.236 3.764 9 O -0.493 6.493 10 N -0.218 5.218 11 C -0.461 4.461 12 H 0.078 0.922 13 C -0.210 4.210 14 N -0.566 5.566 15 Si 0.782 3.218 16 H -0.179 1.179 17 H -0.197 1.197 18 H -0.154 1.154 19 C -0.088 4.088 20 N -0.136 5.136 21 N -0.125 5.125 22 C 0.001 3.999 23 C -0.128 4.128 24 C -0.217 4.217 25 C -0.197 4.197 26 H 0.123 0.877 27 H 0.111 0.889 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.229 0.771 32 H 0.092 0.908 33 H 0.213 0.787 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.907 -29.718 -1.134 34.210 hybrid contribution -0.332 2.002 -0.081 2.031 sum -17.239 -27.716 -1.215 32.662 Atomic orbital electron populations 1.21130 0.83638 1.06355 1.05711 1.21809 0.96019 0.85449 0.91871 1.19119 0.94366 0.89908 1.29496 1.20209 0.83343 0.85431 0.71857 1.90744 1.17837 1.84821 1.49033 1.86593 1.39615 1.15509 1.84177 1.22576 0.94008 0.77750 1.06297 1.20215 0.90264 0.83144 0.82768 1.90578 1.25523 1.78126 1.55044 1.41800 1.08489 1.04580 1.66974 1.19000 0.88222 0.87861 1.51038 0.92215 1.26113 1.04202 0.95013 0.95626 1.69786 1.33837 1.03786 1.49209 0.85401 0.76862 0.79362 0.80192 1.17880 1.19690 1.15384 1.24332 0.97873 0.91828 0.94796 1.77208 0.97452 1.12883 1.26100 1.48851 1.03130 1.07211 1.53337 1.22448 1.03021 0.75070 0.99382 1.21493 0.99659 0.97687 0.94009 1.22146 0.98670 0.99133 1.01729 1.21745 1.02771 0.92044 1.03165 0.87744 0.88880 0.87053 0.86584 0.86451 0.77055 0.90850 0.78687 0.85340 0.87350 0.92397 0.94283 0.91656 0.89660 0.91693 0.91850 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 8.73 71.24 0.62 -0.89 16 2 C 0.18 3.84 5.76 42.17 0.24 4.08 16 3 C -0.32 -8.90 6.13 -20.16 -0.12 -9.02 16 4 C 0.54 17.54 7.95 70.20 0.56 18.10 16 5 O -0.53 -16.95 14.63 19.76 0.29 -16.66 16 6 O -0.34 -12.83 9.60 -50.27 -0.48 -13.32 16 7 C 0.07 2.49 5.95 71.24 0.42 2.92 16 8 C 0.45 21.33 7.86 87.66 0.69 22.01 16 9 O -0.61 -35.39 16.08 15.73 0.25 -35.13 16 10 N -0.58 -27.61 5.09 -306.98 -1.56 -29.17 16 11 C -0.33 -19.52 10.16 84.04 0.85 -18.67 16 12 H 0.06 4.16 7.39 -2.91 -0.02 4.14 16 13 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 14 N -0.93 -55.38 13.96 21.66 0.30 -55.08 16 15 Si 0.96 38.34 27.74 68.60 1.90 40.25 16 16 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 17 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 18 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 19 C 0.10 2.81 11.87 85.67 1.02 3.83 16 20 N -0.32 -8.26 12.50 -56.25 -0.70 -8.97 16 21 N -0.35 -6.70 3.41 -332.97 -1.14 -7.84 16 22 C 0.12 1.20 5.55 86.38 0.48 1.68 16 23 C -0.11 -1.01 3.13 -10.79 -0.03 -1.04 16 24 C -0.16 -1.45 7.58 71.98 0.55 -0.91 16 25 C -0.14 -0.64 9.19 71.98 0.66 0.02 16 26 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.09 1.64 6.51 -2.39 -0.02 1.62 16 28 H 0.11 0.81 4.38 -2.39 -0.01 0.80 16 29 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 30 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 31 H 0.39 15.42 5.76 -92.71 -0.53 14.89 16 32 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.20 5.47 8.06 -2.91 -0.02 5.45 16 34 H 0.13 0.50 7.62 -2.38 -0.02 0.49 16 35 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.04 0.54 5.89 -2.39 -0.01 0.53 16 38 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.08 0.37 6.85 -2.39 -0.02 0.36 16 40 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -81.79 353.13 5.73 -76.06 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.46 Total: 27.82 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 6.40 Total: 22.04 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -3.10 Total: -101.06 kcal Atomic # 8 Polarization: -65.17 SS G_CDS: 0.06 Total: -65.11 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.90 Total: 40.25 kcal Total: -81.79 5.73 -76.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767026916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.942 kcal (2) G-P(sol) polarization free energy of solvation -81.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds