Wall clock time and date at job start Fri Apr 10 2020 18:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30842 * 125.90409 * 2 1 4 4 N 1.40088 * 108.20582 * 179.81747 * 3 2 1 5 5 H 0.96995 * 126.03011 * 180.23421 * 4 3 2 6 6 C 1.34951 * 107.92462 * 0.36252 * 4 3 2 7 7 C 1.50698 * 126.12310 * 179.90979 * 6 4 3 8 8 C 1.35316 * 107.74685 * 359.64029 * 6 4 3 9 9 C 1.50699 * 126.03749 * 180.20463 * 8 6 4 10 10 H 1.08999 * 109.47127 * 6.73871 * 9 8 6 11 11 C 1.53005 * 109.47185 * 246.73604 * 9 8 6 12 12 C 1.53003 * 109.46978 * 126.73817 * 9 8 6 13 13 C 1.50703 * 109.46991 * 184.99916 * 12 9 8 14 14 O 1.20818 * 119.99829 * 359.97438 * 13 12 9 15 15 O 1.34230 * 119.99682 * 179.97438 * 13 12 9 16 16 C 1.45199 * 116.99738 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47020 * 180.02562 * 16 15 13 18 18 O 1.21294 * 120.00038 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00186 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00336 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99904 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00046 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00057 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99915 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47331 * 60.00160 * 24 22 20 26 26 H 1.48499 * 109.47076 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47133 * 300.00220 * 24 22 20 28 28 H 1.09000 * 109.47202 * 267.73403 * 1 2 3 29 29 H 1.09006 * 109.46579 * 27.73072 * 1 2 3 30 30 H 1.08999 * 109.47233 * 147.72602 * 1 2 3 31 31 H 1.08995 * 109.46726 * 269.68705 * 7 6 4 32 32 H 1.08997 * 109.47155 * 149.68544 * 7 6 4 33 33 H 1.08999 * 109.47156 * 29.68397 * 7 6 4 34 34 H 1.09000 * 109.46672 * 303.54886 * 11 9 8 35 35 H 1.08999 * 109.46573 * 63.54544 * 11 9 8 36 36 H 1.08995 * 109.47099 * 183.54417 * 11 9 8 37 37 H 1.08996 * 109.46998 * 305.00151 * 12 9 8 38 38 H 1.09002 * 109.46846 * 65.00180 * 12 9 8 39 39 H 1.08994 * 109.47328 * 300.01029 * 16 15 13 40 40 H 1.09001 * 109.46998 * 60.00563 * 16 15 13 41 41 H 0.97005 * 119.99634 * 0.02562 * 19 17 16 42 42 H 0.97000 * 119.99919 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0042 5 1 4.3908 1.2078 0.0084 6 6 3.6142 -0.7155 -0.0013 7 6 4.8350 -1.5991 -0.0014 8 6 2.3271 -1.1331 -0.0008 9 6 1.8598 -2.5658 -0.0015 10 1 2.7175 -3.2278 0.1180 11 6 1.1591 -2.8731 -1.3265 12 6 0.8821 -2.7840 1.1550 13 6 0.5098 -4.2424 1.2297 14 8 0.9779 -5.0266 0.4388 15 8 -0.3420 -4.6700 2.1749 16 6 -0.6558 -6.0876 2.1868 17 6 -1.6203 -6.3791 3.3074 18 8 -2.0056 -5.4805 4.0251 19 7 -2.0547 -7.6385 3.5122 20 6 -2.9325 -7.9037 4.5314 21 1 -3.2762 -7.1033 5.1699 22 6 -3.3807 -9.2019 4.7421 23 7 -2.9629 -10.1755 3.9648 24 14 -4.5773 -9.5630 6.1303 25 1 -5.8236 -8.7821 5.9253 26 1 -4.8976 -11.0130 6.1430 27 1 -3.9614 -9.1812 7.4265 28 1 -0.3633 -0.0406 1.0269 29 1 -0.3633 0.9097 -0.4782 30 1 -0.3634 -0.8689 -0.5487 31 1 5.1289 -1.8124 -1.0291 32 1 4.6076 -2.5329 0.5127 33 1 5.6513 -1.0910 0.5120 34 1 0.3397 -2.1699 -1.4757 35 1 1.8726 -2.7787 -2.1452 36 1 0.7660 -3.8894 -1.3025 37 1 1.3523 -2.4806 2.0903 38 1 -0.0153 -2.1879 0.9894 39 1 -1.1089 -6.3674 1.2358 40 1 0.2591 -6.6610 2.3359 41 1 -1.7462 -8.3572 2.9384 42 1 -3.2755 -11.0819 4.1121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772027975.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:59 Heat of formation + Delta-G solvation = -66.291790 kcal Electronic energy + Delta-G solvation = -24913.879433 eV Core-core repulsion = 21088.314831 eV Total energy + Delta-G solvation = -3825.564602 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.73226 -40.30004 -38.17638 -36.50076 -35.27661 -33.97863 -33.60110 -31.37008 -30.93250 -29.15165 -28.28414 -27.50482 -27.06754 -24.60110 -22.92018 -20.59660 -20.43179 -19.55281 -19.32022 -18.04863 -17.49798 -17.19855 -16.47451 -16.19434 -15.59252 -15.47321 -14.82254 -14.51424 -14.17334 -13.97122 -13.84169 -13.70235 -13.56138 -13.20329 -13.07536 -12.82515 -12.73473 -12.44708 -12.37686 -12.14755 -11.88363 -11.60487 -11.53827 -11.34665 -11.12872 -11.08688 -10.47904 -10.47571 -10.34557 -10.28354 -10.11089 -9.57803 -9.47480 -8.61658 -8.48948 -8.06467 -6.48317 -3.90285 1.59077 2.38971 2.43213 2.58238 2.85921 3.16755 3.23815 3.28892 3.76401 4.13040 4.33750 4.39823 4.58721 4.69394 4.82107 4.92609 5.06572 5.07093 5.12002 5.16891 5.24808 5.34475 5.42651 5.43034 5.47930 5.56539 5.59832 5.71313 5.73920 5.79442 5.83708 6.00330 6.09477 6.16990 6.24177 6.48085 6.75953 7.02471 7.45833 7.49146 7.90504 8.01359 8.50823 9.08884 9.41462 9.91728 10.68908 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.031469 B = 0.002313 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.550705 B =12105.021347 C =12434.729701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.090 3.910 3 N -0.297 5.297 4 N -0.479 5.479 5 H 0.437 0.563 6 C 0.093 3.907 7 C -0.096 4.096 8 C -0.227 4.227 9 C 0.003 3.997 10 H 0.085 0.915 11 C -0.153 4.153 12 C -0.111 4.111 13 C 0.458 3.542 14 O -0.513 6.513 15 O -0.327 6.327 16 C 0.060 3.940 17 C 0.438 3.562 18 O -0.576 6.576 19 N -0.554 5.554 20 C -0.302 4.302 21 H 0.105 0.895 22 C 0.025 3.975 23 N -0.898 5.898 24 Si 0.934 3.066 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.272 1.272 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.395 0.605 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.967 15.970 -11.030 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 N -0.120 5.120 4 N -0.187 5.187 5 H 0.280 0.720 6 C -0.036 4.036 7 C -0.155 4.155 8 C -0.238 4.238 9 C -0.017 4.017 10 H 0.103 0.897 11 C -0.210 4.210 12 C -0.149 4.149 13 C 0.302 3.698 14 O -0.403 6.403 15 O -0.241 6.241 16 C -0.017 4.017 17 C 0.223 3.777 18 O -0.460 6.460 19 N -0.191 5.191 20 C -0.431 4.431 21 H 0.123 0.877 22 C -0.178 4.178 23 N -0.539 5.539 24 Si 0.761 3.239 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.228 0.772 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.795 17.371 -10.756 24.652 hybrid contribution 0.167 -1.348 0.242 1.380 sum 13.963 16.022 -10.515 23.711 Atomic orbital electron populations 1.20457 0.86773 1.03680 1.03595 1.22200 0.96929 0.90059 0.98462 1.77298 0.86441 1.22318 1.25971 1.46133 1.07323 1.04765 1.60456 0.71972 1.20874 0.96909 0.84928 1.00855 1.20513 0.92741 0.98614 1.03589 1.19584 0.91154 0.95711 1.17350 1.19198 0.97648 0.90717 0.94106 0.89661 1.22025 1.00341 1.02840 0.95801 1.21558 1.02144 0.89441 1.01707 1.23777 0.75927 0.92164 0.77972 1.90611 1.52187 1.57137 1.40317 1.86564 1.58494 1.27679 1.51412 1.22716 1.00014 0.78596 1.00381 1.19361 0.86345 0.84391 0.87603 1.90561 1.61024 1.44900 1.49519 1.41707 1.40695 1.06536 1.30160 1.19674 1.20496 0.94532 1.08447 0.87691 1.25304 0.98586 0.95080 0.98796 1.69605 1.44460 1.01173 1.38616 0.85861 0.80229 0.77167 0.80647 1.19752 1.20893 1.19773 0.89852 0.90769 0.89752 0.89998 0.89188 0.91054 0.92690 0.92743 0.90566 0.87671 0.87344 0.89594 0.89636 0.77169 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 8.67 36.00 0.31 -0.43 16 2 C 0.09 0.96 7.04 -82.40 -0.58 0.38 16 3 N -0.30 -3.37 12.70 33.67 0.43 -2.94 16 4 N -0.48 -4.13 7.36 33.48 0.25 -3.89 16 5 H 0.44 2.38 8.96 -182.61 -1.64 0.75 16 6 C 0.09 0.79 7.21 -82.26 -0.59 0.20 16 7 C -0.10 -0.53 10.11 36.00 0.36 -0.16 16 8 C -0.23 -2.25 4.81 -105.05 -0.51 -2.76 16 9 C 0.00 0.03 2.17 -91.77 -0.20 -0.17 16 10 H 0.09 0.86 6.57 -51.93 -0.34 0.52 16 11 C -0.15 -1.56 8.88 37.16 0.33 -1.23 16 12 C -0.11 -1.23 4.98 -27.88 -0.14 -1.37 16 13 C 0.46 6.83 7.65 36.01 0.28 7.10 16 14 O -0.51 -8.25 13.73 -18.74 -0.26 -8.50 16 15 O -0.33 -5.98 9.75 -45.90 -0.45 -6.43 16 16 C 0.06 1.14 5.94 36.00 0.21 1.36 16 17 C 0.44 10.56 7.86 -10.99 -0.09 10.47 16 18 O -0.58 -16.03 16.08 -14.12 -0.23 -16.25 16 19 N -0.55 -13.99 5.29 -10.96 -0.06 -14.05 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 21 H 0.11 3.02 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 23 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 24 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 28 H 0.08 0.66 7.88 -51.93 -0.41 0.25 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.65 5.01 -51.93 -0.26 0.39 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.51 7.06 -51.93 -0.37 0.14 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.51 5.67 -51.93 -0.29 0.21 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.91 5.90 -51.93 -0.31 0.61 16 37 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.11 1.08 5.61 -51.93 -0.29 0.79 16 39 H 0.09 1.47 8.13 -51.93 -0.42 1.05 16 40 H 0.09 1.47 8.13 -51.93 -0.42 1.05 16 41 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 42 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -34.16 352.34 -6.85 -41.02 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.70 Total: 7.94 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -0.85 Total: 5.47 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 1.34 Total: -44.22 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.93 Total: -31.19 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.16 -6.85 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772027975.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.277 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds