Wall clock time and date at job start Fri Apr 10 2020 18:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30842 * 125.90409 * 2 1 4 4 N 1.40088 * 108.20582 * 179.81747 * 3 2 1 5 5 H 0.96995 * 126.03011 * 180.23421 * 4 3 2 6 6 C 1.34951 * 107.92462 * 0.36252 * 4 3 2 7 7 C 1.50698 * 126.12310 * 179.90979 * 6 4 3 8 8 C 1.35316 * 107.74685 * 359.64029 * 6 4 3 9 9 C 1.50699 * 126.03749 * 180.20463 * 8 6 4 10 10 H 1.08999 * 109.47127 * 6.73871 * 9 8 6 11 11 C 1.53005 * 109.47185 * 246.73604 * 9 8 6 12 12 C 1.53003 * 109.46978 * 126.73817 * 9 8 6 13 13 C 1.50703 * 109.46991 * 184.99916 * 12 9 8 14 14 O 1.20818 * 119.99829 * 359.97438 * 13 12 9 15 15 O 1.34230 * 119.99682 * 179.97438 * 13 12 9 16 16 C 1.45199 * 116.99738 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47020 * 180.02562 * 16 15 13 18 18 O 1.21294 * 120.00038 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00186 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00336 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99904 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00046 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00057 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99915 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47331 * 60.00160 * 24 22 20 26 26 H 1.48499 * 109.47076 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47133 * 300.00220 * 24 22 20 28 28 H 1.09000 * 109.47202 * 267.73403 * 1 2 3 29 29 H 1.09006 * 109.46579 * 27.73072 * 1 2 3 30 30 H 1.08999 * 109.47233 * 147.72602 * 1 2 3 31 31 H 1.08995 * 109.46726 * 269.68705 * 7 6 4 32 32 H 1.08997 * 109.47155 * 149.68544 * 7 6 4 33 33 H 1.08999 * 109.47156 * 29.68397 * 7 6 4 34 34 H 1.09000 * 109.46672 * 303.54886 * 11 9 8 35 35 H 1.08999 * 109.46573 * 63.54544 * 11 9 8 36 36 H 1.08995 * 109.47099 * 183.54417 * 11 9 8 37 37 H 1.08996 * 109.46998 * 305.00151 * 12 9 8 38 38 H 1.09002 * 109.46846 * 65.00180 * 12 9 8 39 39 H 1.08994 * 109.47328 * 300.01029 * 16 15 13 40 40 H 1.09001 * 109.46998 * 60.00563 * 16 15 13 41 41 H 0.97005 * 119.99634 * 0.02562 * 19 17 16 42 42 H 0.97000 * 119.99919 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0042 5 1 4.3908 1.2078 0.0084 6 6 3.6142 -0.7155 -0.0013 7 6 4.8350 -1.5991 -0.0014 8 6 2.3271 -1.1331 -0.0008 9 6 1.8598 -2.5658 -0.0015 10 1 2.7175 -3.2278 0.1180 11 6 1.1591 -2.8731 -1.3265 12 6 0.8821 -2.7840 1.1550 13 6 0.5098 -4.2424 1.2297 14 8 0.9779 -5.0266 0.4388 15 8 -0.3420 -4.6700 2.1749 16 6 -0.6558 -6.0876 2.1868 17 6 -1.6203 -6.3791 3.3074 18 8 -2.0056 -5.4805 4.0251 19 7 -2.0547 -7.6385 3.5122 20 6 -2.9325 -7.9037 4.5314 21 1 -3.2762 -7.1033 5.1699 22 6 -3.3807 -9.2019 4.7421 23 7 -2.9629 -10.1755 3.9648 24 14 -4.5773 -9.5630 6.1303 25 1 -5.8236 -8.7821 5.9253 26 1 -4.8976 -11.0130 6.1430 27 1 -3.9614 -9.1812 7.4265 28 1 -0.3633 -0.0406 1.0269 29 1 -0.3633 0.9097 -0.4782 30 1 -0.3634 -0.8689 -0.5487 31 1 5.1289 -1.8124 -1.0291 32 1 4.6076 -2.5329 0.5127 33 1 5.6513 -1.0910 0.5120 34 1 0.3397 -2.1699 -1.4757 35 1 1.8726 -2.7787 -2.1452 36 1 0.7660 -3.8894 -1.3025 37 1 1.3523 -2.4806 2.0903 38 1 -0.0153 -2.1879 0.9894 39 1 -1.1089 -6.3674 1.2358 40 1 0.2591 -6.6610 2.3359 41 1 -1.7462 -8.3572 2.9384 42 1 -3.2755 -11.0819 4.1121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772027975.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:58 Heat of formation + Delta-G solvation = -88.662276 kcal Electronic energy + Delta-G solvation = -24914.849490 eV Core-core repulsion = 21088.314831 eV Total energy + Delta-G solvation = -3826.534659 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.45416 -41.56869 -40.03290 -37.78130 -36.26288 -35.99941 -34.24571 -33.39809 -31.66537 -30.41006 -29.09304 -28.65688 -27.68922 -26.50402 -23.85632 -21.74749 -21.38085 -21.11798 -20.10042 -20.02147 -18.71874 -18.06461 -17.75780 -17.62963 -17.16702 -16.44714 -16.19095 -15.96286 -15.76422 -15.27779 -14.75398 -14.61931 -14.34935 -14.32270 -13.98090 -13.75855 -13.62948 -13.54247 -13.44204 -13.31638 -13.09248 -12.92836 -12.82101 -12.47255 -12.39256 -12.18737 -12.11799 -11.89144 -11.75245 -11.54982 -11.40839 -11.10823 -10.48070 -10.17656 -10.10099 -9.32242 -8.50686 -6.01227 0.90962 1.21000 1.39176 1.40512 1.47862 1.57531 1.77696 1.89795 2.00090 2.31910 3.09790 3.14985 3.65090 3.72323 3.76015 3.94084 4.08789 4.16918 4.21924 4.25811 4.26261 4.39456 4.50332 4.56471 4.63222 4.74387 4.78757 4.79194 4.97714 5.01577 5.08954 5.17226 5.28635 5.36728 5.38134 5.41481 5.53866 5.79142 5.91204 6.46409 6.48588 6.75146 6.76440 7.04813 7.42240 7.96053 8.66121 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.031469 B = 0.002313 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.550705 B =12105.021347 C =12434.729701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.081 3.919 3 N -0.331 5.331 4 N -0.473 5.473 5 H 0.449 0.551 6 C 0.101 3.899 7 C -0.096 4.096 8 C -0.246 4.246 9 C 0.013 3.987 10 H 0.086 0.914 11 C -0.150 4.150 12 C -0.105 4.105 13 C 0.460 3.540 14 O -0.524 6.524 15 O -0.348 6.348 16 C 0.072 3.928 17 C 0.436 3.564 18 O -0.618 6.618 19 N -0.559 5.559 20 C -0.338 4.338 21 H 0.084 0.916 22 C -0.009 4.009 23 N -0.916 5.916 24 Si 0.997 3.003 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.270 1.270 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.400 0.600 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.855 15.975 -11.378 24.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 N -0.155 5.155 4 N -0.182 5.182 5 H 0.295 0.705 6 C -0.029 4.029 7 C -0.154 4.154 8 C -0.257 4.257 9 C -0.007 4.007 10 H 0.104 0.896 11 C -0.207 4.207 12 C -0.142 4.142 13 C 0.305 3.695 14 O -0.413 6.413 15 O -0.263 6.263 16 C -0.006 4.006 17 C 0.223 3.777 18 O -0.505 6.505 19 N -0.196 5.196 20 C -0.467 4.467 21 H 0.102 0.898 22 C -0.210 4.210 23 N -0.556 5.556 24 Si 0.820 3.180 25 H -0.195 1.195 26 H -0.194 1.194 27 H -0.195 1.195 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.234 0.766 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.713 17.375 -11.137 25.346 hybrid contribution -0.024 -1.309 0.293 1.341 sum 14.689 16.067 -10.844 24.321 Atomic orbital electron populations 1.20526 0.85959 1.04176 1.04032 1.22503 0.97723 0.90170 0.98140 1.77240 0.87647 1.23215 1.27445 1.46173 1.07106 1.05158 1.59801 0.70512 1.21333 0.97589 0.85081 0.98865 1.20635 0.91985 0.98105 1.04673 1.19594 0.91787 0.95252 1.19077 1.19090 0.97224 0.91017 0.93358 0.89582 1.21984 1.00750 1.01791 0.96213 1.21702 1.03054 0.86707 1.02779 1.24454 0.74840 0.93367 0.76869 1.90609 1.52426 1.57774 1.40506 1.86574 1.59779 1.26991 1.52995 1.22474 0.99499 0.79865 0.98728 1.20188 0.86130 0.83377 0.88039 1.90525 1.62615 1.45988 1.51400 1.41750 1.40652 1.07279 1.29965 1.19679 1.22476 0.94796 1.09779 0.89815 1.26116 0.99650 0.94356 1.00850 1.69664 1.44857 1.01575 1.39462 0.84926 0.77930 0.77546 0.77579 1.19484 1.19407 1.19514 0.89404 0.90412 0.89121 0.88752 0.89206 0.89062 0.91967 0.92164 0.92430 0.86683 0.86139 0.87606 0.87647 0.76562 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.43 8.67 71.23 0.62 -0.81 16 2 C 0.08 1.63 7.04 43.10 0.30 1.93 16 3 N -0.33 -7.23 12.70 -47.38 -0.60 -7.83 16 4 N -0.47 -7.45 7.36 -48.00 -0.35 -7.80 16 5 H 0.45 4.17 8.96 -213.33 -1.91 2.26 16 6 C 0.10 1.53 7.21 41.40 0.30 1.83 16 7 C -0.10 -0.80 10.11 71.24 0.72 -0.08 16 8 C -0.25 -4.50 4.81 -20.14 -0.10 -4.60 16 9 C 0.01 0.24 2.17 -11.54 -0.03 0.21 16 10 H 0.09 1.59 6.57 -2.39 -0.02 1.57 16 11 C -0.15 -2.87 8.88 71.98 0.64 -2.23 16 12 C -0.11 -2.19 4.98 29.85 0.15 -2.04 16 13 C 0.46 13.19 7.65 71.24 0.54 13.73 16 14 O -0.52 -16.16 13.73 21.99 0.30 -15.86 16 15 O -0.35 -12.49 9.75 -45.06 -0.44 -12.93 16 16 C 0.07 2.65 5.94 71.23 0.42 3.08 16 17 C 0.44 21.23 7.86 87.66 0.69 21.92 16 18 O -0.62 -35.18 16.08 15.73 0.25 -34.92 16 19 N -0.56 -28.61 5.29 -306.98 -1.62 -30.24 16 20 C -0.34 -18.97 9.68 84.04 0.81 -18.15 16 21 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 22 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 23 N -0.92 -48.52 13.05 21.66 0.28 -48.23 16 24 Si 1.00 41.94 29.55 68.60 2.03 43.97 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 26 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H 0.09 1.31 7.88 -2.39 -0.02 1.29 16 29 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.09 1.30 5.01 -2.39 -0.01 1.29 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.09 0.80 7.06 -2.39 -0.02 0.79 16 33 H 0.09 0.41 8.14 -2.39 -0.02 0.40 16 34 H 0.06 1.07 5.67 -2.39 -0.01 1.06 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.32 5.90 -2.39 -0.01 1.31 16 37 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.12 2.24 5.61 -2.39 -0.01 2.23 16 39 H 0.11 3.50 8.13 -2.39 -0.02 3.48 16 40 H 0.11 3.49 8.13 -2.39 -0.02 3.47 16 41 H 0.40 19.25 7.90 -92.70 -0.73 18.52 16 42 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -73.16 352.34 3.84 -69.33 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -1.56 Total: 29.75 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 5.54 Total: 14.77 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -2.29 Total: -94.10 kcal Atomic # 8 Polarization: -63.83 SS G_CDS: 0.12 Total: -63.72 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -73.16 3.84 -69.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772027975.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.337 kcal (2) G-P(sol) polarization free energy of solvation -73.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds