Wall clock time and date at job start Fri Apr 10 2020 18:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30843 * 125.89601 * 2 1 4 4 N 1.40088 * 108.20049 * 180.25754 * 3 2 1 5 5 H 0.97001 * 126.03752 * 179.73522 * 4 3 2 6 6 C 1.34947 * 107.92945 * 359.72120 * 4 3 2 7 7 C 1.50697 * 126.12759 * 179.97438 * 6 4 3 8 8 C 1.35322 * 107.74266 * 359.97438 * 6 4 3 9 9 C 1.50703 * 126.03929 * 180.02562 * 8 6 4 10 10 H 1.09000 * 109.46628 * 5.90848 * 9 8 6 11 11 C 1.52998 * 109.46860 * 125.90474 * 9 8 6 12 12 C 1.52997 * 109.47301 * 245.90695 * 9 8 6 13 13 C 1.50702 * 109.47227 * 173.34897 * 12 9 8 14 14 O 1.20826 * 119.99741 * 359.97438 * 13 12 9 15 15 O 1.34222 * 119.99853 * 180.02562 * 13 12 9 16 16 C 1.45199 * 116.99810 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.47171 * 179.97438 * 16 15 13 18 18 O 1.21290 * 119.99654 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99952 * 179.97438 * 17 16 15 20 20 C 1.37103 * 119.99893 * 179.97438 * 19 17 16 21 21 H 1.07995 * 119.99745 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99926 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99860 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99923 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47072 * 89.99921 * 24 22 20 26 26 H 1.48498 * 109.47077 * 209.99986 * 24 22 20 27 27 H 1.48498 * 109.47148 * 329.99861 * 24 22 20 28 28 H 1.08999 * 109.47007 * 275.14414 * 1 2 3 29 29 H 1.08997 * 109.47110 * 35.14481 * 1 2 3 30 30 H 1.09000 * 109.47371 * 155.14723 * 1 2 3 31 31 H 1.08997 * 109.47178 * 270.02013 * 7 6 4 32 32 H 1.08995 * 109.47186 * 30.02653 * 7 6 4 33 33 H 1.09005 * 109.46628 * 150.02707 * 7 6 4 34 34 H 1.09005 * 109.46745 * 180.02562 * 11 9 8 35 35 H 1.09000 * 109.47418 * 299.99556 * 11 9 8 36 36 H 1.09001 * 109.47222 * 60.00166 * 11 9 8 37 37 H 1.09005 * 109.46764 * 293.35162 * 12 9 8 38 38 H 1.08995 * 109.46960 * 53.34412 * 12 9 8 39 39 H 1.09007 * 109.46903 * 299.99492 * 16 15 13 40 40 H 1.08990 * 109.47874 * 59.99623 * 16 15 13 41 41 H 0.97003 * 119.99878 * 359.97438 * 19 17 16 42 42 H 0.97005 * 119.99699 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0060 5 1 4.3908 1.2079 -0.0109 6 6 3.6143 -0.7153 -0.0033 7 6 4.8351 -1.5988 -0.0083 8 6 2.3271 -1.1330 0.0047 9 6 1.8599 -2.5657 0.0107 10 1 2.7197 -3.2278 0.1134 11 6 0.9039 -2.7854 1.1849 12 6 1.1348 -2.8713 -1.3014 13 6 0.8116 -4.3418 -1.3662 14 8 1.1291 -5.0707 -0.4564 15 8 0.1719 -4.8419 -2.4350 16 6 -0.1072 -6.2668 -2.4290 17 6 -0.8251 -6.6434 -3.6995 18 8 -1.0771 -5.7943 -4.5281 19 7 -1.1870 -7.9236 -3.9148 20 6 -1.8406 -8.2661 -5.0703 21 1 -2.0657 -7.5100 -5.8077 22 6 -2.2133 -9.5862 -5.2926 23 7 -1.9388 -10.5063 -4.3954 24 14 -3.1044 -10.0527 -6.8666 25 1 -2.1109 -10.4183 -7.9081 26 1 -3.9968 -11.2105 -6.6056 27 1 -3.9137 -8.9001 -7.3374 28 1 -0.3633 0.0921 1.0235 29 1 -0.3633 0.8403 -0.5916 30 1 -0.3634 -0.9325 -0.4319 31 1 5.1239 -1.8136 -1.0372 32 1 5.6538 -1.0901 0.5003 33 1 4.6102 -2.5320 0.5082 34 1 0.5663 -3.8219 1.1895 35 1 1.4205 -2.5679 2.1197 36 1 0.0441 -2.1233 1.0822 37 1 0.2115 -2.2938 -1.3493 38 1 1.7752 -2.6026 -2.1415 39 1 0.8296 -6.8202 -2.3629 40 1 -0.7344 -6.5107 -1.5717 41 1 -0.9851 -8.6027 -3.2522 42 1 -2.1993 -11.4278 -4.5504 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772027991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:02 Heat of formation + Delta-G solvation = -66.533669 kcal Electronic energy + Delta-G solvation = -24903.106914 eV Core-core repulsion = 21077.531823 eV Total energy + Delta-G solvation = -3825.575091 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.73424 -40.29725 -38.17816 -36.50011 -35.29146 -33.98185 -33.60434 -31.37306 -30.94783 -29.10106 -28.34216 -27.53253 -27.02680 -24.60231 -22.89758 -20.62492 -20.42232 -19.55587 -19.32829 -18.05135 -17.52715 -17.18763 -16.48844 -16.22701 -15.58745 -15.41882 -14.85457 -14.51801 -14.18838 -13.96134 -13.81494 -13.68175 -13.60738 -13.21453 -13.04692 -12.81325 -12.71444 -12.48946 -12.39666 -12.13395 -11.88850 -11.60908 -11.52749 -11.33309 -11.13806 -11.10759 -10.47910 -10.43181 -10.34983 -10.29195 -10.13186 -9.59070 -9.47839 -8.62605 -8.49152 -8.06753 -6.48722 -3.90611 1.58754 2.38950 2.41307 2.57764 2.87107 3.14281 3.24321 3.30780 3.76052 4.12815 4.33823 4.39400 4.58957 4.69748 4.82096 4.92254 5.02231 5.05455 5.12547 5.16599 5.25582 5.34978 5.39935 5.47663 5.48970 5.55892 5.59374 5.69771 5.73371 5.79707 5.85067 5.99876 6.09102 6.16612 6.24115 6.47247 6.75178 7.02268 7.45517 7.49072 7.90354 8.01162 8.50473 9.08694 9.41222 9.91403 10.68576 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.030680 B = 0.002302 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.430280 B =12160.073781 C =12354.161199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.091 3.909 3 N -0.297 5.297 4 N -0.478 5.478 5 H 0.437 0.563 6 C 0.093 3.907 7 C -0.097 4.097 8 C -0.227 4.227 9 C 0.003 3.997 10 H 0.086 0.914 11 C -0.155 4.155 12 C -0.109 4.109 13 C 0.458 3.542 14 O -0.513 6.513 15 O -0.327 6.327 16 C 0.060 3.940 17 C 0.438 3.562 18 O -0.576 6.576 19 N -0.554 5.554 20 C -0.302 4.302 21 H 0.106 0.894 22 C 0.024 3.976 23 N -0.898 5.898 24 Si 0.934 3.066 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.268 1.268 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.395 0.605 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.288 16.906 12.216 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 N -0.121 5.121 4 N -0.186 5.186 5 H 0.280 0.720 6 C -0.035 4.035 7 C -0.156 4.156 8 C -0.238 4.238 9 C -0.017 4.017 10 H 0.104 0.896 11 C -0.212 4.212 12 C -0.146 4.146 13 C 0.301 3.699 14 O -0.402 6.402 15 O -0.242 6.242 16 C -0.017 4.017 17 C 0.223 3.777 18 O -0.460 6.460 19 N -0.191 5.191 20 C -0.431 4.431 21 H 0.124 0.876 22 C -0.178 4.178 23 N -0.538 5.538 24 Si 0.760 3.240 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.193 1.193 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.228 0.772 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.167 18.294 11.906 24.517 hybrid contribution 0.247 -1.389 -0.251 1.433 sum 11.414 16.905 11.655 23.493 Atomic orbital electron populations 1.20417 0.86786 1.03695 1.03205 1.22193 0.96919 0.90067 0.98426 1.77293 0.86445 1.22318 1.26018 1.46138 1.07326 1.04773 1.60400 0.71960 1.20897 0.96945 0.84936 1.00740 1.20526 0.92699 0.98569 1.03759 1.19595 0.91115 0.95714 1.17426 1.19202 0.98696 0.90632 0.93182 0.89607 1.22041 0.98967 1.03099 0.97078 1.21537 1.03664 0.88878 1.00548 1.23773 0.74434 0.91918 0.79731 1.90618 1.50518 1.61142 1.37958 1.86563 1.68921 1.26350 1.42333 1.22720 1.01248 0.78230 0.99514 1.19363 0.86017 0.84139 0.88162 1.90562 1.59361 1.49117 1.46952 1.41714 1.50887 1.06399 1.20128 1.19723 1.32617 0.94073 0.96670 0.87640 1.25308 0.97888 0.95309 0.99294 1.69617 1.46866 1.02439 1.34918 0.85802 0.79101 0.78239 0.80832 1.20283 1.20826 1.19280 0.90288 0.90683 0.89839 0.89847 0.91083 0.89185 0.90780 0.92721 0.92407 0.87500 0.87695 0.89629 0.89589 0.77169 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 8.80 36.00 0.32 -0.37 16 2 C 0.09 0.96 7.05 -82.41 -0.58 0.37 16 3 N -0.30 -3.36 12.70 33.67 0.43 -2.94 16 4 N -0.48 -4.13 7.36 33.48 0.25 -3.89 16 5 H 0.44 2.39 8.96 -182.61 -1.64 0.76 16 6 C 0.09 0.80 7.21 -82.26 -0.59 0.21 16 7 C -0.10 -0.54 10.11 36.00 0.36 -0.18 16 8 C -0.23 -2.25 4.80 -105.05 -0.50 -2.76 16 9 C 0.00 0.03 2.14 -91.77 -0.20 -0.17 16 10 H 0.09 0.87 6.51 -51.93 -0.34 0.53 16 11 C -0.15 -1.56 8.73 37.16 0.32 -1.23 16 12 C -0.11 -1.21 5.12 -27.88 -0.14 -1.35 16 13 C 0.46 6.82 7.68 36.01 0.28 7.10 16 14 O -0.51 -8.25 13.82 -18.75 -0.26 -8.51 16 15 O -0.33 -5.99 9.75 -45.88 -0.45 -6.44 16 16 C 0.06 1.14 5.94 36.01 0.21 1.36 16 17 C 0.44 10.56 7.86 -10.98 -0.09 10.48 16 18 O -0.58 -16.04 16.08 -14.11 -0.23 -16.27 16 19 N -0.55 -14.00 5.29 -10.96 -0.06 -14.05 16 20 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 21 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 23 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 24 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 28 H 0.08 0.57 8.07 -51.93 -0.42 0.16 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.65 4.58 -51.93 -0.24 0.41 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.50 7.06 -51.93 -0.37 0.14 16 34 H 0.07 0.88 6.11 -51.93 -0.32 0.56 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.52 5.48 -51.93 -0.28 0.23 16 37 H 0.11 1.07 5.76 -51.93 -0.30 0.77 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.47 8.13 -51.92 -0.42 1.05 16 40 H 0.09 1.47 8.13 -51.93 -0.42 1.05 16 41 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -34.21 352.41 -6.84 -41.06 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.69 Total: 7.86 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -0.85 Total: 5.54 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 1.34 Total: -44.21 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.93 Total: -31.22 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.21 -6.84 -41.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772027991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.477 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds