Wall clock time and date at job start Fri Apr 10 2020 18:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30843 * 125.89601 * 2 1 4 4 N 1.40088 * 108.20049 * 180.25754 * 3 2 1 5 5 H 0.97001 * 126.03752 * 179.73522 * 4 3 2 6 6 C 1.34947 * 107.92945 * 359.72120 * 4 3 2 7 7 C 1.50697 * 126.12759 * 179.97438 * 6 4 3 8 8 C 1.35322 * 107.74266 * 359.97438 * 6 4 3 9 9 C 1.50703 * 126.03929 * 180.02562 * 8 6 4 10 10 H 1.09000 * 109.46628 * 5.90848 * 9 8 6 11 11 C 1.52998 * 109.46860 * 125.90474 * 9 8 6 12 12 C 1.52997 * 109.47301 * 245.90695 * 9 8 6 13 13 C 1.50702 * 109.47227 * 173.34897 * 12 9 8 14 14 O 1.20826 * 119.99741 * 359.97438 * 13 12 9 15 15 O 1.34222 * 119.99853 * 180.02562 * 13 12 9 16 16 C 1.45199 * 116.99810 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.47171 * 179.97438 * 16 15 13 18 18 O 1.21290 * 119.99654 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99952 * 179.97438 * 17 16 15 20 20 C 1.37103 * 119.99893 * 179.97438 * 19 17 16 21 21 H 1.07995 * 119.99745 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99926 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99860 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99923 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47072 * 89.99921 * 24 22 20 26 26 H 1.48498 * 109.47077 * 209.99986 * 24 22 20 27 27 H 1.48498 * 109.47148 * 329.99861 * 24 22 20 28 28 H 1.08999 * 109.47007 * 275.14414 * 1 2 3 29 29 H 1.08997 * 109.47110 * 35.14481 * 1 2 3 30 30 H 1.09000 * 109.47371 * 155.14723 * 1 2 3 31 31 H 1.08997 * 109.47178 * 270.02013 * 7 6 4 32 32 H 1.08995 * 109.47186 * 30.02653 * 7 6 4 33 33 H 1.09005 * 109.46628 * 150.02707 * 7 6 4 34 34 H 1.09005 * 109.46745 * 180.02562 * 11 9 8 35 35 H 1.09000 * 109.47418 * 299.99556 * 11 9 8 36 36 H 1.09001 * 109.47222 * 60.00166 * 11 9 8 37 37 H 1.09005 * 109.46764 * 293.35162 * 12 9 8 38 38 H 1.08995 * 109.46960 * 53.34412 * 12 9 8 39 39 H 1.09007 * 109.46903 * 299.99492 * 16 15 13 40 40 H 1.08990 * 109.47874 * 59.99623 * 16 15 13 41 41 H 0.97003 * 119.99878 * 359.97438 * 19 17 16 42 42 H 0.97005 * 119.99699 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0060 5 1 4.3908 1.2079 -0.0109 6 6 3.6143 -0.7153 -0.0033 7 6 4.8351 -1.5988 -0.0083 8 6 2.3271 -1.1330 0.0047 9 6 1.8599 -2.5657 0.0107 10 1 2.7197 -3.2278 0.1134 11 6 0.9039 -2.7854 1.1849 12 6 1.1348 -2.8713 -1.3014 13 6 0.8116 -4.3418 -1.3662 14 8 1.1291 -5.0707 -0.4564 15 8 0.1719 -4.8419 -2.4350 16 6 -0.1072 -6.2668 -2.4290 17 6 -0.8251 -6.6434 -3.6995 18 8 -1.0771 -5.7943 -4.5281 19 7 -1.1870 -7.9236 -3.9148 20 6 -1.8406 -8.2661 -5.0703 21 1 -2.0657 -7.5100 -5.8077 22 6 -2.2133 -9.5862 -5.2926 23 7 -1.9388 -10.5063 -4.3954 24 14 -3.1044 -10.0527 -6.8666 25 1 -2.1109 -10.4183 -7.9081 26 1 -3.9968 -11.2105 -6.6056 27 1 -3.9137 -8.9001 -7.3374 28 1 -0.3633 0.0921 1.0235 29 1 -0.3633 0.8403 -0.5916 30 1 -0.3634 -0.9325 -0.4319 31 1 5.1239 -1.8136 -1.0372 32 1 5.6538 -1.0901 0.5003 33 1 4.6102 -2.5320 0.5082 34 1 0.5663 -3.8219 1.1895 35 1 1.4205 -2.5679 2.1197 36 1 0.0441 -2.1233 1.0822 37 1 0.2115 -2.2938 -1.3493 38 1 1.7752 -2.6026 -2.1415 39 1 0.8296 -6.8202 -2.3629 40 1 -0.7344 -6.5107 -1.5717 41 1 -0.9851 -8.6027 -3.2522 42 1 -2.1993 -11.4278 -4.5504 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772027991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:02 Heat of formation + Delta-G solvation = -88.947548 kcal Electronic energy + Delta-G solvation = -24904.078852 eV Core-core repulsion = 21077.531823 eV Total energy + Delta-G solvation = -3826.547030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.45410 -41.56800 -40.03536 -37.77771 -36.27667 -36.00368 -34.24856 -33.40101 -31.68431 -30.38453 -29.04488 -28.74825 -27.65319 -26.50724 -23.83113 -21.76498 -21.38467 -21.11384 -20.10452 -20.02624 -18.74114 -18.05595 -17.75997 -17.65089 -17.19011 -16.46269 -16.10548 -15.99873 -15.75728 -15.30446 -14.75926 -14.62129 -14.35656 -14.30508 -13.96828 -13.74953 -13.62761 -13.55024 -13.41318 -13.33230 -13.11088 -12.93903 -12.83872 -12.46330 -12.36355 -12.17415 -12.11189 -11.89139 -11.76012 -11.55880 -11.42795 -11.11034 -10.48501 -10.17653 -10.10271 -9.33161 -8.51131 -6.01574 0.90536 1.20699 1.37169 1.40103 1.47425 1.58514 1.78728 1.89298 2.00042 2.31762 3.09485 3.14605 3.63953 3.74787 3.76206 3.92720 4.06931 4.16790 4.21368 4.25767 4.26053 4.36308 4.46226 4.56383 4.71261 4.75821 4.77154 4.82480 4.95184 5.02594 5.09808 5.18010 5.29216 5.36667 5.38118 5.40689 5.53149 5.78603 5.91064 6.46096 6.48251 6.74869 6.76324 7.04651 7.41966 7.95757 8.65920 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.030680 B = 0.002302 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.430280 B =12160.073781 C =12354.161199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.081 3.919 3 N -0.332 5.332 4 N -0.473 5.473 5 H 0.449 0.551 6 C 0.101 3.899 7 C -0.097 4.097 8 C -0.246 4.246 9 C 0.012 3.988 10 H 0.086 0.914 11 C -0.152 4.152 12 C -0.103 4.103 13 C 0.460 3.540 14 O -0.524 6.524 15 O -0.348 6.348 16 C 0.072 3.928 17 C 0.436 3.564 18 O -0.619 6.619 19 N -0.559 5.559 20 C -0.337 4.337 21 H 0.084 0.916 22 C -0.009 4.009 23 N -0.916 5.916 24 Si 0.997 3.003 25 H -0.269 1.269 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.400 0.600 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.056 16.938 12.620 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 N -0.156 5.156 4 N -0.182 5.182 5 H 0.295 0.705 6 C -0.029 4.029 7 C -0.155 4.155 8 C -0.257 4.257 9 C -0.007 4.007 10 H 0.104 0.896 11 C -0.209 4.209 12 C -0.140 4.140 13 C 0.305 3.695 14 O -0.413 6.413 15 O -0.264 6.264 16 C -0.006 4.006 17 C 0.223 3.777 18 O -0.505 6.505 19 N -0.197 5.197 20 C -0.466 4.466 21 H 0.102 0.898 22 C -0.210 4.210 23 N -0.556 5.556 24 Si 0.820 3.180 25 H -0.195 1.195 26 H -0.194 1.194 27 H -0.196 1.196 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.234 0.766 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.960 18.325 12.347 25.126 hybrid contribution 0.079 -1.355 -0.315 1.393 sum 12.039 16.970 12.032 24.035 Atomic orbital electron populations 1.20487 0.85875 1.03976 1.03912 1.22514 0.97770 0.90141 0.98048 1.77237 0.87623 1.23210 1.27486 1.46179 1.07128 1.05149 1.59763 0.70516 1.21346 0.97615 0.85098 0.98813 1.20642 0.92047 0.98173 1.04632 1.19606 0.91739 0.95270 1.19126 1.19091 0.98429 0.90895 0.92321 0.89624 1.22005 0.99454 1.02036 0.97433 1.21682 1.04585 0.86070 1.01683 1.24450 0.73424 0.93068 0.78576 1.90616 1.50888 1.61740 1.38084 1.86573 1.69933 1.25689 1.44181 1.22478 1.01823 0.79438 0.96824 1.20190 0.85052 0.83201 0.89274 1.90525 1.60923 1.50144 1.48955 1.41755 1.50953 1.07139 1.19813 1.19711 1.34855 0.94446 0.97633 0.89838 1.26117 0.97912 0.94664 1.02295 1.69673 1.46854 1.02877 1.36160 0.84863 0.78083 0.77966 0.77051 1.19457 1.19427 1.19568 0.89342 0.90483 0.89436 0.88961 0.88961 0.89089 0.92632 0.92281 0.91476 0.86317 0.86662 0.87620 0.87611 0.76556 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 8.80 71.24 0.63 -0.69 16 2 C 0.08 1.62 7.05 43.10 0.30 1.93 16 3 N -0.33 -7.19 12.70 -47.38 -0.60 -7.79 16 4 N -0.47 -7.46 7.36 -48.00 -0.35 -7.82 16 5 H 0.45 4.21 8.96 -213.33 -1.91 2.29 16 6 C 0.10 1.54 7.21 41.41 0.30 1.84 16 7 C -0.10 -0.84 10.11 71.23 0.72 -0.12 16 8 C -0.25 -4.51 4.80 -20.14 -0.10 -4.60 16 9 C 0.01 0.23 2.14 -11.54 -0.02 0.20 16 10 H 0.09 1.60 6.51 -2.39 -0.02 1.58 16 11 C -0.15 -2.88 8.73 71.98 0.63 -2.25 16 12 C -0.10 -2.14 5.12 29.85 0.15 -1.99 16 13 C 0.46 13.18 7.68 71.24 0.55 13.72 16 14 O -0.52 -16.18 13.82 21.97 0.30 -15.88 16 15 O -0.35 -12.51 9.75 -44.99 -0.44 -12.95 16 16 C 0.07 2.65 5.94 71.24 0.42 3.08 16 17 C 0.44 21.24 7.86 87.66 0.69 21.93 16 18 O -0.62 -35.23 16.08 15.74 0.25 -34.98 16 19 N -0.56 -28.61 5.29 -306.98 -1.62 -30.24 16 20 C -0.34 -18.92 9.68 84.04 0.81 -18.11 16 21 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 22 C -0.01 -0.48 5.50 84.93 0.47 -0.02 16 23 N -0.92 -48.49 13.05 21.66 0.28 -48.20 16 24 Si 1.00 41.95 29.55 68.60 2.03 43.98 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 28 H 0.09 1.19 8.07 -2.39 -0.02 1.17 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.25 4.58 -2.39 -0.01 1.24 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.09 0.81 7.06 -2.38 -0.02 0.80 16 34 H 0.05 1.27 6.11 -2.38 -0.01 1.25 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.12 5.48 -2.39 -0.01 1.10 16 37 H 0.12 2.21 5.76 -2.38 -0.01 2.20 16 38 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.11 3.49 8.13 -2.38 -0.02 3.47 16 40 H 0.11 3.50 8.13 -2.39 -0.02 3.48 16 41 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 42 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -73.27 352.41 3.84 -69.42 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: -1.55 Total: 29.54 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 5.55 Total: 14.92 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -2.29 Total: -94.05 kcal Atomic # 8 Polarization: -63.92 SS G_CDS: 0.12 Total: -63.81 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -73.27 3.84 -69.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772027991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.524 kcal (2) G-P(sol) polarization free energy of solvation -73.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds