Wall clock time and date at job start Fri Apr 10 2020 18:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30839 * 125.90348 * 2 1 4 4 N 1.40076 * 108.21104 * 180.25363 * 3 2 1 5 5 H 0.96996 * 126.04594 * 179.69396 * 4 3 2 6 6 C 1.34954 * 107.92560 * 359.71809 * 4 3 2 7 7 C 1.50697 * 126.13180 * 180.02562 * 6 4 3 8 8 C 1.35320 * 107.74052 * 359.97438 * 6 4 3 9 9 C 1.50706 * 126.03704 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.46925 * 90.00571 * 9 8 6 11 11 H 1.08998 * 109.47000 * 54.99344 * 10 9 8 12 12 C 1.53004 * 109.46746 * 295.00055 * 10 9 8 13 13 C 1.50696 * 109.47362 * 175.00269 * 10 9 8 14 14 O 1.20829 * 119.99918 * 359.97438 * 13 10 9 15 15 O 1.34226 * 120.00083 * 179.97438 * 13 10 9 16 16 C 1.45200 * 116.99779 * 179.97438 * 15 13 10 17 17 C 1.50701 * 109.47177 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99584 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00458 * 179.97438 * 17 16 15 20 20 C 1.37091 * 120.00008 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00651 * 0.02562 * 20 19 17 22 22 C 1.38959 * 119.99874 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99622 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00264 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47342 * 59.99583 * 24 22 20 26 26 H 1.48496 * 109.47341 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47019 * 300.00330 * 24 22 20 28 28 H 1.08993 * 109.47216 * 270.21731 * 1 2 3 29 29 H 1.09003 * 109.46358 * 30.21933 * 1 2 3 30 30 H 1.08999 * 109.46686 * 150.21616 * 1 2 3 31 31 H 1.08997 * 109.46955 * 269.97217 * 7 6 4 32 32 H 1.09007 * 109.46973 * 29.97087 * 7 6 4 33 33 H 1.08994 * 109.47315 * 149.97313 * 7 6 4 34 34 H 1.09000 * 109.47318 * 209.99804 * 9 8 6 35 35 H 1.09000 * 109.47161 * 330.00435 * 9 8 6 36 36 H 1.09002 * 109.47338 * 299.99905 * 12 10 9 37 37 H 1.09000 * 109.47409 * 60.00095 * 12 10 9 38 38 H 1.09001 * 109.47045 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.47051 * 299.99889 * 16 15 13 40 40 H 1.08999 * 109.47507 * 60.00389 * 16 15 13 41 41 H 0.97001 * 119.99484 * 0.02562 * 19 17 16 42 42 H 0.96993 * 119.99452 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0059 5 1 4.3909 1.2078 -0.0114 6 6 3.6143 -0.7154 -0.0031 7 6 4.8350 -1.5990 -0.0069 8 6 2.3272 -1.1330 0.0049 9 6 1.8599 -2.5658 0.0099 10 6 1.7098 -3.0482 1.4541 11 1 1.0474 -2.3729 1.9957 12 6 3.0821 -3.0675 2.1305 13 6 1.1265 -4.4376 1.4617 14 8 0.8579 -4.9857 0.4189 15 8 0.9054 -5.0664 2.6268 16 6 0.3411 -6.4025 2.5580 17 6 0.1650 -6.9458 3.9526 18 8 0.4834 -6.2729 4.9102 19 7 -0.3471 -8.1790 4.1358 20 6 -0.5067 -8.6734 5.4045 21 1 -0.2225 -8.0746 6.2572 22 6 -1.0343 -9.9450 5.5933 23 7 -1.3797 -10.6738 4.5557 24 14 -1.2525 -10.6185 7.3219 25 1 -2.1676 -9.7332 8.0862 26 1 -1.8290 -11.9851 7.2516 27 1 0.0665 -10.6725 8.0022 28 1 -0.3633 0.0039 1.0276 29 1 -0.3632 0.8881 -0.5173 30 1 -0.3633 -0.8919 -0.5105 31 1 5.1243 -1.8146 -1.0355 32 1 5.6537 -1.0898 0.5017 33 1 4.6101 -2.5317 0.5103 34 1 0.8982 -2.6361 -0.4983 35 1 2.5905 -3.1880 -0.5069 36 1 3.7447 -3.7426 1.5889 37 1 3.5041 -2.0625 2.1251 38 1 2.9753 -3.4116 3.1593 39 1 -0.6268 -6.3628 2.0583 40 1 1.0130 -7.0524 1.9975 41 1 -0.6021 -8.7169 3.3699 42 1 -1.7482 -11.5612 4.6875 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772084613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:10 Heat of formation + Delta-G solvation = -68.023555 kcal Electronic energy + Delta-G solvation = -24972.059401 eV Core-core repulsion = 21146.419704 eV Total energy + Delta-G solvation = -3825.639697 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.71728 -40.33285 -38.17021 -36.32089 -35.33280 -33.98312 -33.71676 -31.48628 -31.32614 -28.96433 -28.27400 -27.87253 -25.85114 -24.83961 -23.61033 -20.52630 -20.30226 -19.55318 -19.21761 -18.05270 -17.65570 -17.26562 -16.49229 -16.24254 -15.60724 -15.37694 -14.88165 -14.50679 -14.15394 -13.98831 -13.92306 -13.66003 -13.30729 -13.20956 -13.13228 -12.73277 -12.66741 -12.53508 -12.27936 -12.19801 -12.02803 -11.78817 -11.60858 -11.27890 -11.10432 -11.08932 -10.66663 -10.48327 -10.35224 -10.30380 -10.17156 -9.58257 -9.47914 -8.60807 -8.49067 -8.06927 -6.48779 -3.90727 1.58197 2.37793 2.39175 2.58870 2.86623 3.16249 3.23414 3.28401 3.75850 4.12354 4.34702 4.41867 4.59646 4.69900 4.81166 4.82718 5.03976 5.06656 5.11732 5.16391 5.24195 5.31052 5.35524 5.42853 5.49920 5.58003 5.66877 5.69801 5.72902 5.74922 5.82948 5.98576 6.00964 6.08261 6.17442 6.45247 6.70947 7.02402 7.45622 7.48686 7.89295 8.00094 8.50307 9.08362 9.40973 9.91193 10.68460 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.032070 B = 0.002326 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.872117 B =12036.792447 C =12157.967172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.087 3.913 3 N -0.298 5.298 4 N -0.478 5.478 5 H 0.437 0.563 6 C 0.096 3.904 7 C -0.108 4.108 8 C -0.231 4.231 9 C -0.024 4.024 10 C -0.075 4.075 11 H 0.109 0.891 12 C -0.149 4.149 13 C 0.461 3.539 14 O -0.515 6.515 15 O -0.324 6.324 16 C 0.060 3.940 17 C 0.439 3.561 18 O -0.576 6.576 19 N -0.553 5.553 20 C -0.302 4.302 21 H 0.105 0.895 22 C 0.025 3.975 23 N -0.898 5.898 24 Si 0.934 3.066 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.272 1.272 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.395 0.605 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.397 17.669 -11.931 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 N -0.121 5.121 4 N -0.186 5.186 5 H 0.280 0.720 6 C -0.033 4.033 7 C -0.166 4.166 8 C -0.242 4.242 9 C -0.063 4.063 10 C -0.095 4.095 11 H 0.127 0.873 12 C -0.206 4.206 13 C 0.304 3.696 14 O -0.404 6.404 15 O -0.238 6.238 16 C -0.018 4.018 17 C 0.223 3.777 18 O -0.460 6.460 19 N -0.191 5.191 20 C -0.432 4.432 21 H 0.123 0.877 22 C -0.178 4.178 23 N -0.538 5.538 24 Si 0.761 3.239 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.228 0.772 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.455 18.992 -11.578 24.168 hybrid contribution 0.079 -1.380 0.194 1.396 sum 9.534 17.612 -11.384 23.036 Atomic orbital electron populations 1.20250 0.86643 1.03489 1.03365 1.22264 0.97011 0.90156 0.98525 1.77294 0.86435 1.22308 1.26075 1.46146 1.07331 1.04833 1.60286 0.71963 1.20891 0.96959 0.84850 1.00553 1.20781 0.92816 0.99238 1.03809 1.19575 0.91169 0.95885 1.17546 1.19737 1.02767 0.90066 0.93733 1.21011 0.99172 0.90090 0.99203 0.87325 1.21965 0.94229 1.02624 1.01759 1.23807 0.75197 0.88782 0.81846 1.90642 1.48859 1.67362 1.33522 1.86558 1.73759 1.30183 1.33340 1.22731 0.99456 0.80958 0.98654 1.19349 0.85563 0.83910 0.88841 1.90560 1.54812 1.58818 1.41820 1.41704 1.54885 1.12962 1.09526 1.19672 1.39720 0.99186 0.84579 0.87694 1.25310 0.96707 0.96092 0.99664 1.69608 1.42486 1.11625 1.30116 0.85860 0.78891 0.77721 0.81422 1.19756 1.20884 1.19774 0.90178 0.90873 0.90100 0.90044 0.90962 0.88428 0.89976 0.90462 0.92001 0.91052 0.90615 0.89606 0.89645 0.77165 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.26 36.01 0.37 -0.29 16 2 C 0.09 0.92 7.22 -82.40 -0.59 0.33 16 3 N -0.30 -3.36 12.70 33.67 0.43 -2.93 16 4 N -0.48 -4.10 7.36 33.48 0.25 -3.85 16 5 H 0.44 2.38 8.96 -182.62 -1.64 0.74 16 6 C 0.10 0.81 6.26 -82.26 -0.52 0.29 16 7 C -0.11 -0.60 9.47 36.00 0.34 -0.26 16 8 C -0.23 -2.28 4.82 -105.05 -0.51 -2.79 16 9 C -0.02 -0.25 4.00 -27.88 -0.11 -0.36 16 10 C -0.08 -0.86 2.82 -91.77 -0.26 -1.12 16 11 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 12 C -0.15 -1.50 7.52 37.16 0.28 -1.22 16 13 C 0.46 7.02 7.26 36.00 0.26 7.28 16 14 O -0.51 -8.63 15.67 -18.75 -0.29 -8.93 16 15 O -0.32 -5.95 9.66 -45.89 -0.44 -6.39 16 16 C 0.06 1.13 5.94 36.01 0.21 1.35 16 17 C 0.44 10.56 7.86 -10.98 -0.09 10.47 16 18 O -0.58 -15.97 16.08 -14.12 -0.23 -16.20 16 19 N -0.55 -13.98 5.29 -10.96 -0.06 -14.04 16 20 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 21 H 0.11 3.01 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.65 5.50 -17.46 -0.10 0.55 16 23 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 24 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.60 7.25 -51.93 -0.38 0.23 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 33 H 0.10 0.58 4.53 -51.93 -0.24 0.34 16 34 H 0.08 0.86 7.06 -51.93 -0.37 0.49 16 35 H 0.08 0.76 7.78 -51.93 -0.40 0.36 16 36 H 0.06 0.56 6.97 -51.93 -0.36 0.20 16 37 H 0.07 0.62 5.79 -51.93 -0.30 0.32 16 38 H 0.07 0.89 8.11 -51.93 -0.42 0.46 16 39 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 40 H 0.09 1.48 8.13 -51.93 -0.42 1.05 16 41 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 42 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 356.06 15.07 5.37 5.37 Total: -1.00 -34.20 356.06 -7.02 -41.23 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.89 Total: 7.66 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -0.85 Total: 5.76 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 1.34 Total: -44.15 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.96 Total: -31.52 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.20 -7.02 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772084613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.795 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds