Wall clock time and date at job start Fri Apr 10 2020 18:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30836 * 125.90309 * 2 1 4 4 N 1.40080 * 108.20867 * 179.81600 * 3 2 1 5 5 H 0.96999 * 126.03826 * 180.22860 * 4 3 2 6 6 C 1.34946 * 107.92639 * 0.36494 * 4 3 2 7 7 C 1.50703 * 126.12821 * 179.90663 * 6 4 3 8 8 C 1.35310 * 107.74594 * 359.64128 * 6 4 3 9 9 C 1.50701 * 126.04421 * 180.20870 * 8 6 4 10 10 H 1.09004 * 109.46788 * 0.02562 * 9 8 6 11 11 C 1.53001 * 109.47527 * 119.99794 * 9 8 6 12 12 C 1.50693 * 109.47557 * 240.00189 * 9 8 6 13 13 O 1.20836 * 119.99893 * 359.97438 * 12 9 8 14 14 O 1.34232 * 120.00672 * 179.97438 * 12 9 8 15 15 C 1.45199 * 117.00404 * 179.97438 * 14 12 9 16 16 C 1.50691 * 109.46881 * 179.97438 * 15 14 12 17 17 O 1.21285 * 120.00499 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99555 * 180.02562 * 16 15 14 19 19 C 1.46500 * 119.99509 * 180.02562 * 18 16 15 20 20 C 1.50707 * 109.46820 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99982 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99780 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00260 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99583 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47151 * 90.00788 * 24 22 20 26 26 H 1.48505 * 109.47350 * 210.00080 * 24 22 20 27 27 H 1.48495 * 109.47660 * 330.00426 * 24 22 20 28 28 H 1.09003 * 109.46956 * 269.95831 * 1 2 3 29 29 H 1.08999 * 109.47037 * 29.95728 * 1 2 3 30 30 H 1.09003 * 109.47071 * 149.95864 * 1 2 3 31 31 H 1.09002 * 109.47152 * 269.68605 * 7 6 4 32 32 H 1.09001 * 109.46980 * 149.68706 * 7 6 4 33 33 H 1.09004 * 109.47113 * 29.68687 * 7 6 4 34 34 H 1.08999 * 109.47159 * 59.99819 * 11 9 8 35 35 H 1.08993 * 109.47452 * 180.02562 * 11 9 8 36 36 H 1.09000 * 109.46983 * 300.00233 * 11 9 8 37 37 H 1.08999 * 109.46736 * 300.00050 * 15 14 12 38 38 H 1.09002 * 109.46643 * 59.99833 * 15 14 12 39 39 H 0.96992 * 120.00291 * 0.02562 * 18 16 15 40 40 H 1.08999 * 109.47508 * 299.99532 * 19 18 16 41 41 H 1.09002 * 109.47633 * 60.00393 * 19 18 16 42 42 H 0.97001 * 120.00244 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0043 5 1 4.3908 1.2078 0.0084 6 6 3.6142 -0.7154 -0.0013 7 6 4.8350 -1.5990 -0.0015 8 6 2.3272 -1.1331 -0.0009 9 6 1.8599 -2.5658 -0.0016 10 1 2.7243 -3.2299 -0.0021 11 6 1.0168 -2.8280 1.2480 12 6 1.0280 -2.8223 -1.2317 13 8 0.8341 -1.9328 -2.0261 14 8 0.5025 -4.0389 -1.4449 15 6 -0.2883 -4.2135 -2.6501 16 6 -0.7913 -5.6323 -2.7197 17 8 -0.5114 -6.4188 -1.8399 18 7 -1.5523 -6.0271 -3.7597 19 6 -2.0418 -7.4063 -3.8270 20 6 -2.8624 -7.5875 -5.0780 21 1 -3.0047 -6.7584 -5.7553 22 6 -3.4307 -8.8121 -5.3583 23 7 -3.2570 -9.8218 -4.5339 24 14 -4.4484 -9.0364 -6.9086 25 1 -3.5660 -9.4699 -8.0216 26 1 -5.4899 -10.0683 -6.6721 27 1 -5.0984 -7.7497 -7.2646 28 1 -0.3633 -0.0007 1.0277 29 1 -0.3633 0.8904 -0.5132 30 1 -0.3633 -0.8896 -0.5145 31 1 5.1291 -1.8123 -1.0292 32 1 4.6077 -2.5329 0.5126 33 1 5.6513 -1.0909 0.5120 34 1 0.1525 -2.1639 1.2490 35 1 0.6792 -3.8643 1.2477 36 1 1.6185 -2.6425 2.1377 37 1 -1.1353 -3.5277 -2.6314 38 1 0.3295 -4.0041 -3.5234 39 1 -1.7758 -5.3983 -4.4635 40 1 -1.1947 -8.0921 -3.8453 41 1 -2.6600 -7.6156 -2.9540 42 1 -3.6571 -10.6832 -4.7309 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786312324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:32 Heat of formation + Delta-G solvation = -63.460844 kcal Electronic energy + Delta-G solvation = -25024.761996 eV Core-core repulsion = 21199.320152 eV Total energy + Delta-G solvation = -3825.441843 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.83028 -40.40460 -38.69630 -36.38327 -34.69688 -34.23726 -33.62043 -32.40574 -30.73676 -29.13564 -28.26875 -27.10249 -26.70668 -24.66404 -22.64728 -21.41986 -20.44044 -19.92616 -19.37032 -18.00868 -17.45614 -17.12309 -16.62009 -16.08185 -15.53420 -15.30238 -15.04467 -14.83702 -14.41256 -14.22330 -13.94433 -13.62107 -13.36488 -13.15608 -13.03367 -12.79236 -12.74072 -12.50785 -12.46795 -12.14784 -11.98482 -11.89360 -11.71667 -11.59099 -11.01551 -10.91741 -10.65701 -10.60890 -10.35235 -10.33175 -9.44879 -9.44010 -9.16455 -8.78132 -8.70250 -7.98161 -6.19713 -4.27010 1.55390 2.19528 2.24584 2.57114 2.76498 3.19486 3.23140 3.29519 3.31876 4.01229 4.26842 4.33147 4.34885 4.59177 4.68154 4.86903 4.91709 5.01611 5.09998 5.16427 5.16734 5.23051 5.26992 5.36326 5.43132 5.46697 5.48147 5.62102 5.78425 5.82531 5.85037 6.01237 6.40207 6.44930 7.01408 7.23018 7.31782 7.46041 7.46234 7.60202 7.77479 7.92097 8.50843 8.71559 8.97292 9.39416 10.90415 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.031704 B = 0.002316 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.964941 B =12086.242198 C =12319.414205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.114 3.886 3 N -0.299 5.299 4 N -0.477 5.477 5 H 0.438 0.562 6 C 0.101 3.899 7 C -0.099 4.099 8 C -0.226 4.226 9 C 0.002 3.998 10 H 0.113 0.887 11 C -0.145 4.145 12 C 0.461 3.539 13 O -0.499 6.499 14 O -0.327 6.327 15 C 0.048 3.952 16 C 0.500 3.500 17 O -0.534 6.534 18 N -0.707 5.707 19 C 0.251 3.749 20 C -0.545 4.545 21 H 0.064 0.936 22 C 0.064 3.936 23 N -0.885 5.885 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.393 0.607 40 H 0.029 0.971 41 H 0.030 0.970 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.084 19.036 10.528 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 N -0.122 5.122 4 N -0.184 5.184 5 H 0.281 0.719 6 C -0.028 4.028 7 C -0.157 4.157 8 C -0.238 4.238 9 C -0.018 4.018 10 H 0.131 0.869 11 C -0.203 4.203 12 C 0.303 3.697 13 O -0.387 6.387 14 O -0.242 6.242 15 C -0.029 4.029 16 C 0.283 3.717 17 O -0.411 6.411 18 N -0.357 5.357 19 C 0.131 3.869 20 C -0.583 4.583 21 H 0.082 0.918 22 C -0.140 4.140 23 N -0.522 5.522 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.225 0.775 40 H 0.047 0.953 41 H 0.048 0.952 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.161 19.756 10.932 26.652 hybrid contribution -0.224 -0.323 -1.473 1.525 sum 13.937 19.433 9.458 25.716 Atomic orbital electron populations 1.20340 0.86842 1.04080 1.02507 1.22064 0.96870 0.89720 0.96630 1.77314 0.86275 1.22147 1.26448 1.46090 1.07469 1.04580 1.60306 0.71856 1.20806 0.96569 0.85208 1.00195 1.20555 0.92795 0.98501 1.03861 1.19053 0.91485 0.94268 1.18957 1.19117 0.98130 0.93281 0.91303 0.86910 1.21847 0.99804 1.03461 0.95140 1.23793 0.78097 0.80152 0.87615 1.90667 1.56927 1.44974 1.46107 1.86568 1.61645 1.33322 1.42709 1.22842 0.96111 0.97313 0.86667 1.19905 0.80262 0.88106 0.83469 1.90705 1.57591 1.54452 1.38399 1.46369 1.50595 1.16062 1.22722 1.19170 0.94614 0.75534 0.97576 1.21211 1.33069 0.97190 1.06853 0.91784 1.24949 0.96264 0.95547 0.97229 1.69968 1.43879 1.02017 1.36328 0.86397 0.79754 0.78084 0.82567 1.20441 1.20977 1.19718 0.90544 0.90782 0.90089 0.89774 0.89188 0.90776 0.91743 0.90338 0.91075 0.88601 0.88687 0.77451 0.95279 0.95245 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 8.57 36.00 0.31 -0.52 16 2 C 0.11 1.36 6.53 -82.40 -0.54 0.83 16 3 N -0.30 -3.66 12.70 33.67 0.43 -3.23 16 4 N -0.48 -4.32 7.36 33.48 0.25 -4.07 16 5 H 0.44 2.47 8.96 -182.61 -1.64 0.83 16 6 C 0.10 0.89 7.21 -82.27 -0.59 0.30 16 7 C -0.10 -0.50 10.06 36.01 0.36 -0.13 16 8 C -0.23 -2.42 4.37 -105.05 -0.46 -2.88 16 9 C 0.00 0.02 2.99 -92.93 -0.28 -0.26 16 10 H 0.11 0.93 6.79 -51.93 -0.35 0.57 16 11 C -0.15 -1.29 8.99 37.16 0.33 -0.95 16 12 C 0.46 6.12 6.29 36.00 0.23 6.34 16 13 O -0.50 -7.50 13.61 -18.76 -0.26 -7.75 16 14 O -0.33 -4.98 9.66 -45.91 -0.44 -5.42 16 15 C 0.05 0.72 5.94 36.00 0.21 0.94 16 16 C 0.50 9.85 7.91 -10.99 -0.09 9.76 16 17 O -0.53 -12.79 16.50 -14.11 -0.23 -13.03 16 18 N -0.71 -14.47 5.55 -61.47 -0.34 -14.81 16 19 C 0.25 6.51 5.43 -5.19 -0.03 6.49 16 20 C -0.54 -14.51 9.28 -34.44 -0.32 -14.83 16 21 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.88 -25.69 13.29 55.43 0.74 -24.96 16 24 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 H 0.08 0.64 7.92 -51.93 -0.41 0.23 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.92 5.30 -51.93 -0.28 0.64 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.38 7.14 -51.93 -0.37 0.01 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.57 6.16 -51.93 -0.32 0.25 16 35 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 1.25 8.13 -51.93 -0.42 0.82 16 38 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 39 H 0.39 6.77 8.32 -40.82 -0.34 6.43 16 40 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 358.29 15.07 5.40 5.40 Total: -1.00 -35.54 358.29 -7.48 -43.02 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.04 Total: 2.56 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -0.95 Total: 6.73 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 1.07 Total: -47.07 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.93 Total: -26.20 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.54 -7.48 -43.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786312324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.443 kcal (2) G-P(sol) polarization free energy of solvation -35.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds