Wall clock time and date at job start Fri Apr 10 2020 18:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30836 * 125.90309 * 2 1 4 4 N 1.40080 * 108.20867 * 179.81600 * 3 2 1 5 5 H 0.96999 * 126.03826 * 180.22860 * 4 3 2 6 6 C 1.34946 * 107.92639 * 0.36494 * 4 3 2 7 7 C 1.50703 * 126.12821 * 179.90663 * 6 4 3 8 8 C 1.35310 * 107.74594 * 359.64128 * 6 4 3 9 9 C 1.50701 * 126.04421 * 180.20870 * 8 6 4 10 10 H 1.09004 * 109.46788 * 0.02562 * 9 8 6 11 11 C 1.53001 * 109.47527 * 119.99794 * 9 8 6 12 12 C 1.50693 * 109.47557 * 240.00189 * 9 8 6 13 13 O 1.20836 * 119.99893 * 359.97438 * 12 9 8 14 14 O 1.34232 * 120.00672 * 179.97438 * 12 9 8 15 15 C 1.45199 * 117.00404 * 179.97438 * 14 12 9 16 16 C 1.50691 * 109.46881 * 179.97438 * 15 14 12 17 17 O 1.21285 * 120.00499 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99555 * 180.02562 * 16 15 14 19 19 C 1.46500 * 119.99509 * 180.02562 * 18 16 15 20 20 C 1.50707 * 109.46820 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99982 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99780 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00260 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99583 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47151 * 90.00788 * 24 22 20 26 26 H 1.48505 * 109.47350 * 210.00080 * 24 22 20 27 27 H 1.48495 * 109.47660 * 330.00426 * 24 22 20 28 28 H 1.09003 * 109.46956 * 269.95831 * 1 2 3 29 29 H 1.08999 * 109.47037 * 29.95728 * 1 2 3 30 30 H 1.09003 * 109.47071 * 149.95864 * 1 2 3 31 31 H 1.09002 * 109.47152 * 269.68605 * 7 6 4 32 32 H 1.09001 * 109.46980 * 149.68706 * 7 6 4 33 33 H 1.09004 * 109.47113 * 29.68687 * 7 6 4 34 34 H 1.08999 * 109.47159 * 59.99819 * 11 9 8 35 35 H 1.08993 * 109.47452 * 180.02562 * 11 9 8 36 36 H 1.09000 * 109.46983 * 300.00233 * 11 9 8 37 37 H 1.08999 * 109.46736 * 300.00050 * 15 14 12 38 38 H 1.09002 * 109.46643 * 59.99833 * 15 14 12 39 39 H 0.96992 * 120.00291 * 0.02562 * 18 16 15 40 40 H 1.08999 * 109.47508 * 299.99532 * 19 18 16 41 41 H 1.09002 * 109.47633 * 60.00393 * 19 18 16 42 42 H 0.97001 * 120.00244 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0043 5 1 4.3908 1.2078 0.0084 6 6 3.6142 -0.7154 -0.0013 7 6 4.8350 -1.5990 -0.0015 8 6 2.3272 -1.1331 -0.0009 9 6 1.8599 -2.5658 -0.0016 10 1 2.7243 -3.2299 -0.0021 11 6 1.0168 -2.8280 1.2480 12 6 1.0280 -2.8223 -1.2317 13 8 0.8341 -1.9328 -2.0261 14 8 0.5025 -4.0389 -1.4449 15 6 -0.2883 -4.2135 -2.6501 16 6 -0.7913 -5.6323 -2.7197 17 8 -0.5114 -6.4188 -1.8399 18 7 -1.5523 -6.0271 -3.7597 19 6 -2.0418 -7.4063 -3.8270 20 6 -2.8624 -7.5875 -5.0780 21 1 -3.0047 -6.7584 -5.7553 22 6 -3.4307 -8.8121 -5.3583 23 7 -3.2570 -9.8218 -4.5339 24 14 -4.4484 -9.0364 -6.9086 25 1 -3.5660 -9.4699 -8.0216 26 1 -5.4899 -10.0683 -6.6721 27 1 -5.0984 -7.7497 -7.2646 28 1 -0.3633 -0.0007 1.0277 29 1 -0.3633 0.8904 -0.5132 30 1 -0.3633 -0.8896 -0.5145 31 1 5.1291 -1.8123 -1.0292 32 1 4.6077 -2.5329 0.5126 33 1 5.6513 -1.0909 0.5120 34 1 0.1525 -2.1639 1.2490 35 1 0.6792 -3.8643 1.2477 36 1 1.6185 -2.6425 2.1377 37 1 -1.1353 -3.5277 -2.6314 38 1 0.3295 -4.0041 -3.5234 39 1 -1.7758 -5.3983 -4.4635 40 1 -1.1947 -8.0921 -3.8453 41 1 -2.6600 -7.6156 -2.9540 42 1 -3.6571 -10.6832 -4.7309 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786312324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:31 Heat of formation + Delta-G solvation = -88.505658 kcal Electronic energy + Delta-G solvation = -25025.848020 eV Core-core repulsion = 21199.320152 eV Total energy + Delta-G solvation = -3826.527868 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.60848 -41.50700 -40.30923 -37.54756 -36.15070 -35.51473 -34.39433 -34.30349 -31.47016 -30.63402 -29.03093 -28.50081 -27.69562 -25.61396 -24.51680 -22.43340 -21.59933 -21.18356 -20.21772 -19.22152 -18.79309 -18.22931 -17.74784 -17.56907 -17.00874 -16.74612 -16.26365 -16.10223 -15.71436 -15.37074 -14.71494 -14.64099 -14.55343 -14.21473 -14.07546 -13.92555 -13.65558 -13.64019 -13.51472 -13.27211 -13.15332 -12.99246 -12.91939 -12.71012 -12.57041 -12.32028 -12.22154 -11.78857 -11.49947 -11.47448 -11.29482 -10.86264 -10.80375 -10.20402 -9.90003 -9.44161 -8.28367 -6.44632 0.83859 1.17789 1.24506 1.45366 1.46861 1.58192 1.59384 1.78792 1.96631 2.36557 2.65374 3.06883 3.56188 3.65730 3.71252 3.77368 4.04911 4.09499 4.14668 4.20411 4.20615 4.35334 4.52309 4.72144 4.73899 4.75695 4.88182 5.00079 5.07030 5.10706 5.13046 5.18468 5.24384 5.31426 5.37849 5.44425 5.65255 5.66376 5.83920 6.43320 6.64247 6.69043 6.71611 6.82891 7.22338 7.38296 8.83680 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.031704 B = 0.002316 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.964941 B =12086.242198 C =12319.414205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.097 3.903 3 N -0.334 5.334 4 N -0.470 5.470 5 H 0.451 0.549 6 C 0.113 3.887 7 C -0.099 4.099 8 C -0.250 4.250 9 C 0.008 3.992 10 H 0.135 0.865 11 C -0.142 4.142 12 C 0.464 3.536 13 O -0.518 6.518 14 O -0.344 6.344 15 C 0.060 3.940 16 C 0.500 3.500 17 O -0.581 6.581 18 N -0.700 5.700 19 C 0.267 3.733 20 C -0.556 4.556 21 H 0.085 0.915 22 C 0.005 3.995 23 N -0.929 5.929 24 Si 0.984 3.016 25 H -0.271 1.271 26 H -0.284 1.284 27 H -0.256 1.256 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.412 0.588 40 H -0.007 1.007 41 H -0.007 1.007 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.937 20.401 9.726 27.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 N -0.158 5.158 4 N -0.179 5.179 5 H 0.297 0.703 6 C -0.017 4.017 7 C -0.157 4.157 8 C -0.262 4.262 9 C -0.012 4.012 10 H 0.153 0.847 11 C -0.199 4.199 12 C 0.307 3.693 13 O -0.406 6.406 14 O -0.259 6.259 15 C -0.017 4.017 16 C 0.286 3.714 17 O -0.461 6.461 18 N -0.352 5.352 19 C 0.144 3.856 20 C -0.594 4.594 21 H 0.103 0.897 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.807 3.193 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.180 1.180 28 H 0.111 0.889 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.248 0.752 40 H 0.011 0.989 41 H 0.011 0.989 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.030 21.193 10.115 27.881 hybrid contribution -0.395 -0.702 -1.157 1.409 sum 14.635 20.491 8.959 26.727 Atomic orbital electron populations 1.20334 0.86626 1.03308 1.03355 1.22323 0.97437 0.90311 0.96813 1.77235 0.87690 1.22961 1.27924 1.46141 1.07097 1.05152 1.59539 0.70272 1.21360 0.97307 0.85268 0.97745 1.20730 0.91794 0.98438 1.04749 1.19183 0.92191 0.94059 1.20727 1.19224 0.98410 0.93632 0.89984 0.84744 1.21837 0.99930 1.02725 0.95407 1.24435 0.77618 0.79037 0.88183 1.90658 1.57690 1.45236 1.47021 1.86576 1.61948 1.34707 1.42699 1.22685 0.97546 0.93609 0.87868 1.20686 0.78883 0.89810 0.82010 1.90682 1.59063 1.56404 1.39984 1.46056 1.50776 1.14444 1.23907 1.18621 0.92749 0.77817 0.96373 1.21609 1.32767 0.98010 1.07037 0.89710 1.26030 0.97477 0.95151 1.00834 1.70124 1.45218 1.02729 1.38706 0.85173 0.77792 0.78500 0.77851 1.19657 1.21013 1.18008 0.88930 0.91122 0.91130 0.89148 0.88026 0.88408 0.92057 0.91254 0.89134 0.86121 0.86271 0.75232 0.98922 0.98897 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 8.57 71.23 0.61 -0.99 16 2 C 0.10 2.26 6.53 43.10 0.28 2.54 16 3 N -0.33 -7.94 12.70 -47.38 -0.60 -8.54 16 4 N -0.47 -7.75 7.36 -48.00 -0.35 -8.10 16 5 H 0.45 4.27 8.96 -213.33 -1.91 2.36 16 6 C 0.11 1.74 7.21 41.40 0.30 2.04 16 7 C -0.10 -0.67 10.06 71.24 0.72 0.04 16 8 C -0.25 -4.96 4.37 -20.14 -0.09 -5.05 16 9 C 0.01 0.14 2.99 -12.29 -0.04 0.10 16 10 H 0.13 1.88 6.79 -2.38 -0.02 1.86 16 11 C -0.14 -2.33 8.99 71.98 0.65 -1.69 16 12 C 0.46 11.71 6.29 71.23 0.45 12.16 16 13 O -0.52 -14.92 13.61 21.93 0.30 -14.62 16 14 O -0.34 -10.11 9.66 -45.08 -0.44 -10.54 16 15 C 0.06 1.71 5.94 71.23 0.42 2.13 16 16 C 0.50 19.76 7.91 87.65 0.69 20.45 16 17 O -0.58 -28.63 16.50 15.75 0.26 -28.37 16 18 N -0.70 -28.69 5.55 -466.77 -2.59 -31.28 16 19 C 0.27 14.29 5.43 85.64 0.46 14.76 16 20 C -0.56 -29.62 9.28 25.60 0.24 -29.38 16 21 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 22 C 0.00 0.27 5.46 84.66 0.46 0.73 16 23 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 24 Si 0.98 41.73 29.54 68.60 2.03 43.76 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 28 H 0.09 1.51 7.92 -2.39 -0.02 1.50 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.58 5.30 -2.39 -0.01 1.57 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.10 0.50 7.14 -2.39 -0.02 0.48 16 33 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 34 H 0.06 1.03 6.16 -2.39 -0.01 1.02 16 35 H 0.07 1.27 8.11 -2.39 -0.02 1.25 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.12 2.88 8.13 -2.39 -0.02 2.87 16 38 H 0.12 2.87 8.13 -2.39 -0.02 2.85 16 39 H 0.41 13.64 8.32 -92.71 -0.77 12.87 16 40 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 42 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -79.13 358.29 2.44 -76.69 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -1.61 Total: 18.08 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 5.16 Total: 17.84 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -3.26 Total: -102.83 kcal Atomic # 8 Polarization: -53.66 SS G_CDS: 0.12 Total: -53.53 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -79.13 2.44 -76.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786312324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.819 kcal (2) G-P(sol) polarization free energy of solvation -79.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds