Wall clock time and date at job start Fri Apr 10 2020 18:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 115.55299 * 2 1 4 4 C 1.53004 * 110.53664 * 271.50432 * 3 2 1 5 5 N 1.47312 * 110.73058 * 148.58319 * 3 2 1 6 6 C 1.34528 * 106.61789 * 241.19180 * 5 3 2 7 7 O 1.21538 * 123.76972 * 180.21235 * 6 5 3 8 8 N 1.33797 * 112.45779 * 0.37780 * 6 5 3 9 9 C 1.46492 * 124.17747 * 179.86496 * 8 6 5 10 10 C 1.50703 * 109.47441 * 269.70424 * 9 8 6 11 11 O 1.21283 * 119.99488 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00290 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 9 14 14 C 1.50700 * 109.46769 * 179.72341 * 13 12 10 15 15 H 1.07997 * 120.00357 * 359.97438 * 14 13 12 16 16 C 1.37886 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99860 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00087 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46949 * 60.00023 * 18 16 14 20 20 H 1.48499 * 109.47367 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47219 * 300.00256 * 18 16 14 22 22 C 1.34766 * 111.64317 * 359.60397 * 8 6 5 23 23 O 1.21233 * 127.15524 * 180.26417 * 22 8 6 24 24 C 1.53002 * 117.51898 * 145.70701 * 2 1 3 25 25 C 1.53007 * 60.00169 * 107.47661 * 24 2 1 26 26 H 1.09001 * 109.47383 * 59.99665 * 1 2 3 27 27 H 1.08999 * 109.47366 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46875 * 299.99798 * 1 2 3 29 29 H 1.08996 * 109.47061 * 182.12665 * 4 3 2 30 30 H 1.09004 * 109.46757 * 302.13008 * 4 3 2 31 31 H 1.08995 * 109.47007 * 62.12654 * 4 3 2 32 32 H 0.96998 * 126.69356 * 61.44671 * 5 3 2 33 33 H 1.08998 * 109.47276 * 149.70340 * 9 8 6 34 34 H 1.09002 * 109.47526 * 29.70652 * 9 8 6 35 35 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 36 36 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 37 37 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 38 38 H 0.96999 * 120.00067 * 179.97438 * 17 16 14 39 39 H 1.09007 * 117.49598 * 214.96965 * 24 2 1 40 40 H 1.08993 * 117.49744 * 359.97438 * 24 2 1 41 41 H 1.08993 * 117.49948 * 252.51082 * 25 24 2 42 42 H 1.09001 * 117.49349 * 107.48760 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.3875 1.8808 -1.4323 5 7 3.4756 1.3436 0.7182 6 6 3.3615 2.1931 1.7551 7 8 4.2512 2.4058 2.5552 8 7 2.1579 2.7750 1.8090 9 6 1.7560 3.7409 2.8345 10 6 1.1345 3.0104 3.9969 11 8 1.0365 1.8018 3.9709 12 7 0.6867 3.7001 5.0647 13 6 0.0881 2.9893 6.1972 14 6 -0.3209 3.9827 7.2541 15 1 -0.1514 5.0378 7.0980 16 6 -0.9114 3.5444 8.4205 17 7 -1.1173 2.2595 8.6108 18 14 -1.4177 4.7756 9.7309 19 1 -2.4080 5.7248 9.1621 20 1 -2.0258 4.0553 10.8784 21 1 -0.2225 5.5255 10.1937 22 6 1.3628 2.3669 0.8003 23 8 0.2234 2.7166 0.5786 24 6 2.2369 -1.1210 0.7645 25 6 2.2363 -1.1208 -0.7655 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 2.8921 2.8467 -1.4133 30 1 2.9940 1.1648 -1.9869 31 1 1.4171 1.9874 -1.9170 32 1 4.2541 0.8135 0.4863 33 1 1.0309 4.4373 2.4134 34 1 2.6317 4.2918 3.1778 35 1 0.7648 4.6667 5.0852 36 1 -0.7889 2.4382 5.8577 37 1 0.8154 2.2932 6.6148 38 1 -1.5324 1.9511 9.4314 39 1 3.1721 -0.8751 1.2676 40 1 1.6120 -1.8586 1.2680 41 1 1.6111 -1.8582 -1.2687 42 1 3.1712 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789991065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:39 Heat of formation + Delta-G solvation = -50.105725 kcal Electronic energy + Delta-G solvation = -26480.134514 eV Core-core repulsion = 22655.271792 eV Total energy + Delta-G solvation = -3824.862722 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.76074 -39.12555 -38.68940 -38.10147 -35.88281 -34.54402 -34.10127 -32.36625 -30.89580 -29.25763 -28.54210 -26.79890 -25.05522 -22.97975 -22.73229 -22.52748 -21.14542 -19.76151 -19.51900 -18.09673 -17.67390 -16.72869 -16.23066 -16.05994 -15.76058 -15.54939 -15.09363 -14.86553 -14.64050 -14.44336 -14.33023 -14.03165 -13.59436 -13.07257 -12.92712 -12.83826 -12.76164 -12.53076 -12.30413 -11.97824 -11.91988 -11.56977 -11.54032 -11.04800 -10.96842 -10.86335 -10.66449 -10.35363 -10.24656 -10.19822 -9.85760 -9.62880 -9.42313 -8.99654 -8.74461 -7.93953 -6.16327 -4.23602 1.58989 2.05959 2.87798 3.02254 3.22300 3.26354 3.30906 3.32478 3.47545 3.75187 4.03983 4.08810 4.36790 4.41562 4.59044 4.78522 4.83962 4.91969 5.13381 5.19684 5.20688 5.21046 5.29462 5.36812 5.49071 5.55668 5.59803 5.63906 5.74105 5.77981 5.81707 5.90203 6.18801 6.63174 6.99038 7.26385 7.33422 7.36937 7.50328 7.63719 7.95679 8.07279 8.54396 8.74057 9.00482 9.42507 10.93860 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.023368 B = 0.003292 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.924115 B = 8502.713984 C = 8783.504884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.130 4.130 3 C 0.160 3.840 4 C -0.142 4.142 5 N -0.721 5.721 6 C 0.712 3.288 7 O -0.538 6.538 8 N -0.556 5.556 9 C 0.096 3.904 10 C 0.486 3.514 11 O -0.544 6.544 12 N -0.705 5.705 13 C 0.251 3.749 14 C -0.545 4.545 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.541 3.459 23 O -0.458 6.458 24 C -0.160 4.160 25 C -0.163 4.163 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.436 0.564 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.392 0.608 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.267 0.733 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.964 -1.819 -22.786 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.132 4.132 3 C 0.069 3.931 4 C -0.200 4.200 5 N -0.386 5.386 6 C 0.413 3.587 7 O -0.411 6.411 8 N -0.301 5.301 9 C -0.030 4.030 10 C 0.269 3.731 11 O -0.422 6.422 12 N -0.354 5.354 13 C 0.131 3.869 14 C -0.583 4.583 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C 0.328 3.672 23 O -0.326 6.326 24 C -0.197 4.197 25 C -0.199 4.199 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.281 0.719 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.225 0.775 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.602 -2.438 -22.239 23.628 hybrid contribution 0.072 0.781 0.868 1.170 sum 7.673 -1.657 -21.371 22.767 Atomic orbital electron populations 1.21369 0.90078 1.02320 1.03408 1.21460 0.95975 0.87747 1.07997 1.20788 0.83365 0.94666 0.94253 1.21970 1.04194 1.01929 0.91927 1.45596 1.16223 1.47093 1.29644 1.15725 0.82183 0.79097 0.81743 1.91019 1.41627 1.66021 1.42444 1.45783 1.14610 1.42397 1.27347 1.21592 1.03020 0.90524 0.87831 1.20504 0.79872 0.88539 0.84224 1.90686 1.57072 1.13882 1.80581 1.46376 1.59885 1.10569 1.18605 1.19132 0.93416 0.92743 0.81614 1.21179 1.41759 0.93318 1.02029 0.91822 1.24955 0.95312 0.95487 0.98239 1.69966 1.42170 1.13439 1.26696 0.86452 0.78874 0.80788 0.80666 1.20032 1.21074 1.20023 1.20534 0.85926 0.80434 0.80337 1.90784 1.14461 1.57168 1.70203 1.23140 1.02720 0.99859 0.93988 1.23100 1.01943 1.00026 0.94876 0.91478 0.91879 0.91134 0.91339 0.90247 0.89649 0.71917 0.86152 0.85951 0.77487 0.95437 0.95431 0.92369 0.88244 0.88076 0.88088 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 8.45 37.15 0.31 -0.98 16 2 C -0.13 -1.32 2.00 -154.50 -0.31 -1.63 16 3 C 0.16 1.66 1.08 -132.09 -0.14 1.52 16 4 C -0.14 -1.00 8.82 37.16 0.33 -0.67 16 5 N -0.72 -7.66 4.46 -52.93 -0.24 -7.90 16 6 C 0.71 10.70 8.62 -88.01 -0.76 9.94 16 7 O -0.54 -9.83 17.48 5.33 0.09 -9.74 16 8 N -0.56 -8.44 2.09 -122.03 -0.26 -8.69 16 9 C 0.10 1.44 6.18 -5.20 -0.03 1.41 16 10 C 0.49 10.01 7.90 -10.98 -0.09 9.93 16 11 O -0.54 -13.49 16.43 5.55 0.09 -13.40 16 12 N -0.71 -15.01 5.55 -61.47 -0.34 -15.35 16 13 C 0.25 6.76 5.43 -5.19 -0.03 6.74 16 14 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 15 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 18 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 22 C 0.54 7.66 6.28 -10.55 -0.07 7.60 16 23 O -0.46 -7.27 15.92 5.60 0.09 -7.18 16 24 C -0.16 -1.61 9.58 -26.73 -0.26 -1.87 16 25 C -0.16 -1.16 9.44 -26.72 -0.25 -1.41 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 28 H 0.07 1.05 6.71 -51.92 -0.35 0.70 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.39 7.15 -51.93 -0.37 0.02 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.44 3.43 8.59 -40.82 -0.35 3.08 16 33 H 0.12 1.48 8.00 -51.93 -0.42 1.06 16 34 H 0.12 1.59 7.85 -51.93 -0.41 1.18 16 35 H 0.39 6.95 8.32 -40.82 -0.34 6.61 16 36 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.10 1.04 6.74 -51.92 -0.35 0.69 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.51 7.47 -51.93 -0.39 0.12 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -36.13 356.42 -7.06 -43.19 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.89 Total: 6.26 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: -1.71 Total: 17.06 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.10 Total: -57.54 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: 0.27 Total: -30.31 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.13 -7.06 -43.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789991065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.914 kcal (2) G-P(sol) polarization free energy of solvation -36.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds