Wall clock time and date at job start Fri Apr 10 2020 18:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 115.55299 * 2 1 4 4 C 1.53004 * 110.53664 * 271.50432 * 3 2 1 5 5 N 1.47312 * 110.73058 * 148.58319 * 3 2 1 6 6 C 1.34528 * 106.61789 * 241.19180 * 5 3 2 7 7 O 1.21538 * 123.76972 * 180.21235 * 6 5 3 8 8 N 1.33797 * 112.45779 * 0.37780 * 6 5 3 9 9 C 1.46492 * 124.17747 * 179.86496 * 8 6 5 10 10 C 1.50703 * 109.47441 * 269.70424 * 9 8 6 11 11 O 1.21283 * 119.99488 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00290 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 9 14 14 C 1.50700 * 109.46769 * 179.72341 * 13 12 10 15 15 H 1.07997 * 120.00357 * 359.97438 * 14 13 12 16 16 C 1.37886 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99860 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00087 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46949 * 60.00023 * 18 16 14 20 20 H 1.48499 * 109.47367 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47219 * 300.00256 * 18 16 14 22 22 C 1.34766 * 111.64317 * 359.60397 * 8 6 5 23 23 O 1.21233 * 127.15524 * 180.26417 * 22 8 6 24 24 C 1.53002 * 117.51898 * 145.70701 * 2 1 3 25 25 C 1.53007 * 60.00169 * 107.47661 * 24 2 1 26 26 H 1.09001 * 109.47383 * 59.99665 * 1 2 3 27 27 H 1.08999 * 109.47366 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46875 * 299.99798 * 1 2 3 29 29 H 1.08996 * 109.47061 * 182.12665 * 4 3 2 30 30 H 1.09004 * 109.46757 * 302.13008 * 4 3 2 31 31 H 1.08995 * 109.47007 * 62.12654 * 4 3 2 32 32 H 0.96998 * 126.69356 * 61.44671 * 5 3 2 33 33 H 1.08998 * 109.47276 * 149.70340 * 9 8 6 34 34 H 1.09002 * 109.47526 * 29.70652 * 9 8 6 35 35 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 36 36 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 37 37 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 38 38 H 0.96999 * 120.00067 * 179.97438 * 17 16 14 39 39 H 1.09007 * 117.49598 * 214.96965 * 24 2 1 40 40 H 1.08993 * 117.49744 * 359.97438 * 24 2 1 41 41 H 1.08993 * 117.49948 * 252.51082 * 25 24 2 42 42 H 1.09001 * 117.49349 * 107.48760 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.3875 1.8808 -1.4323 5 7 3.4756 1.3436 0.7182 6 6 3.3615 2.1931 1.7551 7 8 4.2512 2.4058 2.5552 8 7 2.1579 2.7750 1.8090 9 6 1.7560 3.7409 2.8345 10 6 1.1345 3.0104 3.9969 11 8 1.0365 1.8018 3.9709 12 7 0.6867 3.7001 5.0647 13 6 0.0881 2.9893 6.1972 14 6 -0.3209 3.9827 7.2541 15 1 -0.1514 5.0378 7.0980 16 6 -0.9114 3.5444 8.4205 17 7 -1.1173 2.2595 8.6108 18 14 -1.4177 4.7756 9.7309 19 1 -2.4080 5.7248 9.1621 20 1 -2.0258 4.0553 10.8784 21 1 -0.2225 5.5255 10.1937 22 6 1.3628 2.3669 0.8003 23 8 0.2234 2.7166 0.5786 24 6 2.2369 -1.1210 0.7645 25 6 2.2363 -1.1208 -0.7655 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 2.8921 2.8467 -1.4133 30 1 2.9940 1.1648 -1.9869 31 1 1.4171 1.9874 -1.9170 32 1 4.2541 0.8135 0.4863 33 1 1.0309 4.4373 2.4134 34 1 2.6317 4.2918 3.1778 35 1 0.7648 4.6667 5.0852 36 1 -0.7889 2.4382 5.8577 37 1 0.8154 2.2932 6.6148 38 1 -1.5324 1.9511 9.4314 39 1 3.1721 -0.8751 1.2676 40 1 1.6120 -1.8586 1.2680 41 1 1.6111 -1.8582 -1.2687 42 1 3.1712 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789991065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:38 Heat of formation + Delta-G solvation = -77.752530 kcal Electronic energy + Delta-G solvation = -26481.333369 eV Core-core repulsion = 22655.271792 eV Total energy + Delta-G solvation = -3826.061577 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.82873 -40.63304 -39.92453 -39.16854 -37.05944 -36.26821 -35.44020 -34.42618 -31.67984 -30.74346 -29.47454 -28.61560 -26.00673 -24.82210 -23.87273 -23.21866 -22.51148 -21.38280 -20.43555 -19.38081 -19.09269 -18.15495 -17.58894 -17.38746 -17.08455 -16.77101 -16.59617 -16.35080 -16.16580 -15.74672 -15.46745 -15.21808 -14.77184 -14.39464 -14.31924 -14.04148 -13.89925 -13.55646 -13.46703 -13.28890 -13.17150 -12.98629 -12.68833 -12.64014 -12.30141 -12.26781 -12.05536 -11.69055 -11.62221 -11.55249 -11.11546 -10.82592 -10.74818 -10.69173 -10.47832 -9.95102 -8.31526 -6.48902 0.49123 0.95073 1.42072 1.46567 1.54621 1.54801 1.79653 2.01371 2.30645 2.51850 2.71573 2.82597 3.03329 3.28414 3.65260 3.74144 3.78792 3.91149 4.03701 4.06814 4.09402 4.26954 4.42583 4.63912 4.71610 4.77380 4.81291 4.84421 4.96882 5.01868 5.03974 5.15251 5.17201 5.22856 5.26042 5.40255 5.60609 5.71367 5.79381 5.89793 6.26029 6.60193 6.73494 6.99623 7.18251 7.34215 8.80665 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.023368 B = 0.003292 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.924115 B = 8502.713984 C = 8783.504884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.151 4.151 3 C 0.168 3.832 4 C -0.137 4.137 5 N -0.697 5.697 6 C 0.705 3.295 7 O -0.577 6.577 8 N -0.566 5.566 9 C 0.104 3.896 10 C 0.480 3.520 11 O -0.593 6.593 12 N -0.699 5.699 13 C 0.269 3.731 14 C -0.558 4.558 15 H 0.088 0.912 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.988 3.012 19 H -0.260 1.260 20 H -0.286 1.286 21 H -0.261 1.261 22 C 0.530 3.470 23 O -0.481 6.481 24 C -0.186 4.186 25 C -0.117 4.117 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.023 0.977 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.451 0.549 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.413 0.587 36 H -0.013 1.013 37 H -0.015 1.015 38 H 0.269 0.731 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.892 -0.445 -24.999 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.152 4.152 3 C 0.077 3.923 4 C -0.194 4.194 5 N -0.362 5.362 6 C 0.406 3.594 7 O -0.453 6.453 8 N -0.311 5.311 9 C -0.021 4.021 10 C 0.266 3.734 11 O -0.474 6.474 12 N -0.349 5.349 13 C 0.146 3.854 14 C -0.596 4.596 15 H 0.106 0.894 16 C -0.197 4.197 17 N -0.570 5.570 18 Si 0.810 3.190 19 H -0.185 1.185 20 H -0.211 1.211 21 H -0.186 1.186 22 C 0.318 3.682 23 O -0.351 6.351 24 C -0.223 4.223 25 C -0.153 4.153 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.299 0.701 33 H 0.171 0.829 34 H 0.166 0.834 35 H 0.249 0.751 36 H 0.005 0.995 37 H 0.003 0.997 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.554 -1.046 -24.528 25.998 hybrid contribution -0.251 0.257 1.524 1.566 sum 8.303 -0.789 -23.004 24.469 Atomic orbital electron populations 1.21295 0.91304 1.02481 1.01701 1.21491 0.95263 0.88098 1.10336 1.20958 0.82050 0.93836 0.95426 1.22042 1.05197 1.03012 0.89183 1.45502 1.16891 1.45651 1.28182 1.15931 0.81699 0.79564 0.82204 1.90987 1.42733 1.67537 1.44086 1.45974 1.15045 1.42649 1.27430 1.21627 1.04396 0.90216 0.85852 1.21548 0.78633 0.88225 0.85034 1.90659 1.58726 1.16383 1.81631 1.46077 1.59748 1.11447 1.17644 1.18550 0.90930 0.92537 0.83373 1.21592 1.41588 0.94295 1.02091 0.89449 1.26111 0.94974 0.97570 1.01014 1.70140 1.43167 1.16100 1.27626 0.85166 0.78988 0.77908 0.76916 1.18485 1.21101 1.18568 1.21302 0.85889 0.80664 0.80354 1.90761 1.15409 1.58054 1.70863 1.23154 1.02343 1.00109 0.96715 1.23251 1.02413 0.97251 0.92429 0.90208 0.90813 0.95743 0.90806 0.87021 0.89206 0.70139 0.82916 0.83364 0.75089 0.99512 0.99668 0.92213 0.88934 0.89496 0.86466 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.48 8.45 71.98 0.61 -1.88 16 2 C -0.15 -2.84 2.00 -52.18 -0.10 -2.94 16 3 C 0.17 3.19 1.08 2.99 0.00 3.19 16 4 C -0.14 -1.43 8.82 71.98 0.63 -0.79 16 5 N -0.70 -13.76 4.46 -439.80 -1.96 -15.72 16 6 C 0.71 20.98 8.62 179.44 1.55 22.53 16 7 O -0.58 -21.18 17.48 -3.83 -0.07 -21.25 16 8 N -0.57 -17.08 2.09 -777.22 -1.63 -18.71 16 9 C 0.10 3.09 6.18 85.64 0.53 3.62 16 10 C 0.48 20.47 7.90 87.66 0.69 21.16 16 11 O -0.59 -31.20 16.43 -3.04 -0.05 -31.25 16 12 N -0.70 -30.58 5.55 -466.79 -2.59 -33.17 16 13 C 0.27 15.26 5.43 85.63 0.46 15.72 16 14 C -0.56 -30.91 9.28 25.60 0.24 -30.67 16 15 H 0.09 4.32 7.60 -2.91 -0.02 4.29 16 16 C 0.00 0.17 5.46 84.66 0.46 0.63 16 17 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 18 Si 0.99 42.89 29.54 68.60 2.03 44.91 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 20 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 C 0.53 14.83 6.28 87.94 0.55 15.38 16 23 O -0.48 -15.39 15.92 -2.89 -0.05 -15.44 16 24 C -0.19 -3.61 9.58 30.60 0.29 -3.31 16 25 C -0.12 -1.25 9.44 30.60 0.29 -0.96 16 26 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.44 8.11 -2.39 -0.02 1.42 16 28 H 0.02 0.76 6.71 -2.38 -0.02 0.74 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.11 0.48 7.15 -2.39 -0.02 0.47 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.45 6.06 8.59 -92.71 -0.80 5.26 16 33 H 0.15 3.53 8.00 -2.39 -0.02 3.51 16 34 H 0.15 3.66 7.85 -2.39 -0.02 3.64 16 35 H 0.41 14.46 8.32 -92.71 -0.77 13.69 16 36 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 37 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.09 1.90 6.74 -2.38 -0.02 1.88 16 40 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.13 0.63 7.47 -2.39 -0.02 0.62 16 Total: -1.00 -84.89 356.42 1.68 -83.21 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.50 Total: 22.81 kcal Atomic # 6 Polarization: 35.46 SS G_CDS: 6.21 Total: 41.67 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -5.89 Total: -124.66 kcal Atomic # 8 Polarization: -67.78 SS G_CDS: -0.16 Total: -67.94 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -84.89 1.68 -83.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789991065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.454 kcal (2) G-P(sol) polarization free energy of solvation -84.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds