Wall clock time and date at job start Fri Apr 10 2020 18:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40197 * 120.36430 * 2 1 4 4 C 1.35354 * 119.94549 * 180.02562 * 3 2 1 5 5 N 1.35762 * 120.70391 * 0.02562 * 4 3 2 6 6 C 1.46499 * 119.62393 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47280 * 270.02606 * 6 5 4 8 8 C 1.52992 * 109.47069 * 60.00116 * 7 6 5 9 9 O 1.42907 * 109.46838 * 299.99860 * 7 6 5 10 10 C 1.50700 * 109.47045 * 180.02562 * 7 6 5 11 11 O 1.20826 * 119.99660 * 334.99987 * 10 7 6 12 12 O 1.34229 * 119.99866 * 154.99584 * 10 7 6 13 13 C 1.45198 * 116.99682 * 179.97438 * 12 10 7 14 14 C 1.53006 * 109.46914 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.46937 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00148 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00129 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00183 * 180.02562 * 17 15 14 19 19 Si 1.86809 * 119.99551 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.46857 * 89.99936 * 19 17 15 21 21 H 1.48499 * 109.46667 * 209.99783 * 19 17 15 22 22 H 1.48500 * 109.46895 * 329.99766 * 19 17 15 23 23 C 1.34662 * 120.74915 * 0.02562 * 5 4 3 24 24 O 1.22063 * 119.98236 * 179.97438 * 23 5 4 25 25 C 1.36396 * 120.37105 * 180.30333 * 2 1 3 26 26 H 1.08997 * 109.47315 * 90.00084 * 1 2 3 27 27 H 1.08998 * 109.47188 * 210.00035 * 1 2 3 28 28 H 1.09003 * 109.47460 * 330.00126 * 1 2 3 29 29 H 1.07998 * 120.02681 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.64643 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.46933 * 30.02667 * 6 5 4 32 32 H 1.09000 * 109.46763 * 150.02264 * 6 5 4 33 33 H 1.08997 * 109.47635 * 60.00178 * 8 7 6 34 34 H 1.09000 * 109.46938 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.47457 * 299.99856 * 8 7 6 36 36 H 0.96692 * 113.99883 * 299.99862 * 9 7 6 37 37 H 1.09003 * 109.47717 * 300.00228 * 13 12 10 38 38 H 1.09004 * 109.47525 * 60.00649 * 13 12 10 39 39 H 1.08996 * 109.47215 * 300.00225 * 14 13 12 40 40 H 1.09004 * 109.46680 * 60.00502 * 14 13 12 41 41 H 0.96999 * 119.99692 * 179.97438 * 18 17 15 42 42 H 1.08004 * 120.34808 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2156 1.2097 0.0000 4 6 3.5691 1.1998 -0.0005 5 7 4.2538 0.0274 -0.0016 6 6 5.7187 0.0443 -0.0027 7 6 6.2276 0.0515 -1.4456 8 6 5.7027 1.2954 -2.1652 9 8 5.7642 -1.1202 -2.1199 10 6 7.7345 0.0683 -1.4467 11 8 8.3343 0.5162 -0.4982 12 8 8.4103 -0.4145 -2.5012 13 6 9.8598 -0.3658 -2.4335 14 6 10.4503 -0.9550 -3.7162 15 6 11.9548 -0.9039 -3.6463 16 1 12.4412 -0.4927 -2.7741 17 6 12.7104 -1.3821 -4.6958 18 7 14.0234 -1.3379 -4.6345 19 14 11.8690 -2.0926 -6.2047 20 1 11.6309 -1.0111 -7.1940 21 1 12.7363 -3.1351 -6.8100 22 1 10.5713 -2.6966 -5.8094 23 6 3.6016 -1.1507 -0.0026 24 8 4.2313 -2.1965 -0.0040 25 6 2.1966 -1.1768 -0.0062 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6820 2.1486 -0.0004 30 1 4.1102 2.1344 -0.0001 31 1 6.0721 0.9380 0.5117 32 1 6.0926 -0.8418 0.5101 33 1 6.0561 2.1891 -1.6510 34 1 6.0649 1.3003 -3.1933 35 1 4.6127 1.2829 -2.1645 36 1 6.0594 -1.9482 -1.7173 37 1 10.1841 0.6694 -2.3268 38 1 10.2033 -0.9443 -1.5759 39 1 10.1261 -1.9901 -3.8233 40 1 10.1069 -0.3760 -4.5736 41 1 14.5549 -1.6747 -5.3727 42 1 1.6683 -2.1188 -0.0108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790693341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:46 Heat of formation + Delta-G solvation = -142.543352 kcal Electronic energy + Delta-G solvation = -25616.460036 eV Core-core repulsion = 21755.296166 eV Total energy + Delta-G solvation = -3861.163869 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.88266 -40.42037 -37.72253 -37.27034 -36.37017 -35.35773 -33.33361 -31.99519 -30.80678 -30.42028 -29.24689 -26.84531 -25.73083 -24.01765 -23.64776 -21.81659 -20.74870 -20.39189 -18.80017 -17.81108 -17.27227 -16.99958 -16.81105 -16.32612 -16.29382 -16.18112 -14.97203 -14.80821 -14.58014 -14.36932 -14.21531 -13.82892 -13.67715 -13.39870 -13.05269 -12.85841 -12.77322 -12.67376 -12.46725 -12.34673 -12.15613 -11.93658 -11.88682 -11.57837 -11.30378 -11.08057 -10.74343 -10.55809 -10.24447 -10.06267 -9.98114 -9.77332 -9.73299 -9.37536 -8.64401 -8.24769 -6.15157 -4.16776 0.50476 1.58923 2.12112 2.19412 2.88813 3.27382 3.34974 3.38303 3.40447 3.83548 4.13490 4.16514 4.21400 4.36321 4.37344 4.60718 4.73687 4.77724 4.88362 5.01406 5.13800 5.18456 5.18607 5.23305 5.30236 5.35905 5.43197 5.61904 5.75755 5.77206 5.85415 5.88620 6.04743 6.20516 6.37909 6.62862 6.80027 7.09669 7.17897 7.30135 7.59045 7.82715 7.90958 8.36571 8.85712 9.44339 10.97217 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.030702 B = 0.002700 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.787597 B =10369.093879 C =10640.810607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.012 3.988 3 C -0.231 4.231 4 C 0.136 3.864 5 N -0.488 5.488 6 C 0.074 3.926 7 C 0.135 3.865 8 C -0.146 4.146 9 O -0.527 6.527 10 C 0.437 3.563 11 O -0.508 6.508 12 O -0.343 6.343 13 C 0.079 3.921 14 C -0.009 4.009 15 C -0.529 4.529 16 H 0.075 0.925 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.881 3.119 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.262 1.262 23 C 0.522 3.478 24 O -0.547 6.547 25 C -0.246 4.246 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.145 0.855 30 H 0.162 0.838 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.392 0.608 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.029 0.971 40 H 0.024 0.976 41 H 0.266 0.734 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.618 7.568 9.939 31.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.008 3.992 3 C -0.254 4.254 4 C 0.009 3.991 5 N -0.199 5.199 6 C -0.048 4.048 7 C 0.091 3.909 8 C -0.203 4.203 9 O -0.334 6.334 10 C 0.278 3.722 11 O -0.397 6.397 12 O -0.258 6.258 13 C 0.007 3.993 14 C -0.046 4.046 15 C -0.567 4.567 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.534 5.534 19 Si 0.707 3.293 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.187 1.187 23 C 0.325 3.675 24 O -0.429 6.429 25 C -0.268 4.268 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.163 0.837 30 H 0.180 0.820 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.242 0.758 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -28.045 7.377 9.712 30.583 hybrid contribution 0.228 -0.599 -0.383 0.747 sum -27.817 6.778 9.329 30.113 Atomic orbital electron populations 1.20925 0.90406 1.03458 1.03170 1.20204 0.96763 0.92680 0.89524 1.20538 0.92327 0.98948 1.13615 1.21975 0.93591 0.89846 0.93713 1.45327 1.07873 1.07099 1.59576 1.22483 0.78249 1.07414 0.96672 1.21306 0.86214 0.90634 0.92776 1.21896 1.02561 0.93374 1.02507 1.86589 1.75711 1.15136 1.55964 1.24149 0.91588 0.75290 0.81179 1.90668 1.70773 1.42932 1.35372 1.86570 1.24795 1.73052 1.41399 1.23496 0.71957 1.01867 1.02013 1.19627 0.96515 0.96861 0.91619 1.20819 0.87977 1.42425 1.05430 0.90665 1.24933 0.94708 0.94959 0.98369 1.69891 1.04527 1.46375 1.32604 0.86753 0.80074 0.79405 0.83021 1.20038 1.21116 1.18681 1.17057 0.89229 0.82529 0.78725 1.90933 1.69094 1.30228 1.52686 1.21957 0.92392 0.99559 1.12873 0.90074 0.90855 0.90813 0.83742 0.82029 0.86669 0.87077 0.90070 0.89683 0.90245 0.75840 0.91557 0.91525 0.95266 0.95759 0.92394 0.83603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 10.03 36.00 0.36 -0.16 16 2 C 0.01 0.08 5.89 -104.55 -0.62 -0.53 16 3 C -0.23 -1.32 9.71 -39.87 -0.39 -1.71 16 4 C 0.14 0.87 8.11 -16.84 -0.14 0.73 16 5 N -0.49 -4.72 2.34 -119.77 -0.28 -5.00 16 6 C 0.07 0.78 4.19 -4.04 -0.02 0.76 16 7 C 0.13 1.66 1.12 -91.78 -0.10 1.56 16 8 C -0.15 -1.43 8.13 37.15 0.30 -1.13 16 9 O -0.53 -7.42 11.56 -57.97 -0.67 -8.09 16 10 C 0.44 7.02 6.80 36.01 0.24 7.27 16 11 O -0.51 -8.95 15.84 -18.75 -0.30 -9.24 16 12 O -0.34 -6.50 9.97 -44.43 -0.44 -6.95 16 13 C 0.08 1.68 5.40 37.16 0.20 1.88 16 14 C -0.01 -0.21 4.42 -27.88 -0.12 -0.34 16 15 C -0.53 -15.04 9.66 -34.44 -0.33 -15.38 16 16 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 18 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 19 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 23 C 0.52 6.42 6.90 -15.45 -0.11 6.32 16 24 O -0.55 -8.60 15.38 -4.66 -0.07 -8.67 16 25 C -0.25 -2.42 9.65 -39.38 -0.38 -2.80 16 26 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 28 H 0.07 0.21 8.10 -51.93 -0.42 -0.21 16 29 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 30 H 0.16 0.51 7.92 -52.49 -0.42 0.09 16 31 H 0.12 0.96 7.74 -51.93 -0.40 0.56 16 32 H 0.11 1.33 7.39 -51.93 -0.38 0.94 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.67 6.28 -51.93 -0.33 0.34 16 36 H 0.39 5.26 8.40 45.56 0.38 5.65 16 37 H 0.07 1.39 8.13 -51.93 -0.42 0.97 16 38 H 0.07 1.42 8.13 -51.93 -0.42 1.00 16 39 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 40 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.15 1.34 8.06 -52.48 -0.42 0.91 16 LS Contribution 354.56 15.07 5.34 5.34 Total: -1.00 -35.20 354.56 -6.80 -42.00 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.30 Total: 1.76 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -1.19 Total: -1.51 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.49 Total: -31.58 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -1.48 Total: -32.95 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.20 -6.80 -42.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790693341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.543 kcal (2) G-P(sol) polarization free energy of solvation -35.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds