Wall clock time and date at job start Fri Apr 10 2020 18:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40197 * 120.36430 * 2 1 4 4 C 1.35354 * 119.94549 * 180.02562 * 3 2 1 5 5 N 1.35762 * 120.70391 * 0.02562 * 4 3 2 6 6 C 1.46499 * 119.62393 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47280 * 270.02606 * 6 5 4 8 8 C 1.52992 * 109.47069 * 60.00116 * 7 6 5 9 9 O 1.42907 * 109.46838 * 299.99860 * 7 6 5 10 10 C 1.50700 * 109.47045 * 180.02562 * 7 6 5 11 11 O 1.20826 * 119.99660 * 334.99987 * 10 7 6 12 12 O 1.34229 * 119.99866 * 154.99584 * 10 7 6 13 13 C 1.45198 * 116.99682 * 179.97438 * 12 10 7 14 14 C 1.53006 * 109.46914 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.46937 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00148 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00129 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00183 * 180.02562 * 17 15 14 19 19 Si 1.86809 * 119.99551 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.46857 * 89.99936 * 19 17 15 21 21 H 1.48499 * 109.46667 * 209.99783 * 19 17 15 22 22 H 1.48500 * 109.46895 * 329.99766 * 19 17 15 23 23 C 1.34662 * 120.74915 * 0.02562 * 5 4 3 24 24 O 1.22063 * 119.98236 * 179.97438 * 23 5 4 25 25 C 1.36396 * 120.37105 * 180.30333 * 2 1 3 26 26 H 1.08997 * 109.47315 * 90.00084 * 1 2 3 27 27 H 1.08998 * 109.47188 * 210.00035 * 1 2 3 28 28 H 1.09003 * 109.47460 * 330.00126 * 1 2 3 29 29 H 1.07998 * 120.02681 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.64643 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.46933 * 30.02667 * 6 5 4 32 32 H 1.09000 * 109.46763 * 150.02264 * 6 5 4 33 33 H 1.08997 * 109.47635 * 60.00178 * 8 7 6 34 34 H 1.09000 * 109.46938 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.47457 * 299.99856 * 8 7 6 36 36 H 0.96692 * 113.99883 * 299.99862 * 9 7 6 37 37 H 1.09003 * 109.47717 * 300.00228 * 13 12 10 38 38 H 1.09004 * 109.47525 * 60.00649 * 13 12 10 39 39 H 1.08996 * 109.47215 * 300.00225 * 14 13 12 40 40 H 1.09004 * 109.46680 * 60.00502 * 14 13 12 41 41 H 0.96999 * 119.99692 * 179.97438 * 18 17 15 42 42 H 1.08004 * 120.34808 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2156 1.2097 0.0000 4 6 3.5691 1.1998 -0.0005 5 7 4.2538 0.0274 -0.0016 6 6 5.7187 0.0443 -0.0027 7 6 6.2276 0.0515 -1.4456 8 6 5.7027 1.2954 -2.1652 9 8 5.7642 -1.1202 -2.1199 10 6 7.7345 0.0683 -1.4467 11 8 8.3343 0.5162 -0.4982 12 8 8.4103 -0.4145 -2.5012 13 6 9.8598 -0.3658 -2.4335 14 6 10.4503 -0.9550 -3.7162 15 6 11.9548 -0.9039 -3.6463 16 1 12.4412 -0.4927 -2.7741 17 6 12.7104 -1.3821 -4.6958 18 7 14.0234 -1.3379 -4.6345 19 14 11.8690 -2.0926 -6.2047 20 1 11.6309 -1.0111 -7.1940 21 1 12.7363 -3.1351 -6.8100 22 1 10.5713 -2.6966 -5.8094 23 6 3.6016 -1.1507 -0.0026 24 8 4.2313 -2.1965 -0.0040 25 6 2.1966 -1.1768 -0.0062 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6820 2.1486 -0.0004 30 1 4.1102 2.1344 -0.0001 31 1 6.0721 0.9380 0.5117 32 1 6.0926 -0.8418 0.5101 33 1 6.0561 2.1891 -1.6510 34 1 6.0649 1.3003 -3.1933 35 1 4.6127 1.2829 -2.1645 36 1 6.0594 -1.9482 -1.7173 37 1 10.1841 0.6694 -2.3268 38 1 10.2033 -0.9443 -1.5759 39 1 10.1261 -1.9901 -3.8233 40 1 10.1069 -0.3760 -4.5736 41 1 14.5549 -1.6747 -5.3727 42 1 1.6683 -2.1188 -0.0108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790693341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:45 Heat of formation + Delta-G solvation = -166.270573 kcal Electronic energy + Delta-G solvation = -25617.488925 eV Core-core repulsion = 21755.296166 eV Total energy + Delta-G solvation = -3862.192759 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.69394 -41.67304 -38.81701 -38.06554 -37.79981 -36.10012 -35.42210 -33.00794 -32.67807 -31.04487 -29.88466 -27.69222 -27.38400 -25.06337 -24.51087 -22.75342 -22.45612 -21.52504 -19.95966 -19.04576 -18.49699 -18.05283 -18.00621 -17.61238 -17.55840 -16.95103 -16.36575 -15.97524 -15.84709 -15.25279 -15.15138 -15.03616 -14.88528 -14.57450 -14.14349 -13.74169 -13.59761 -13.53902 -13.39297 -13.33709 -13.20460 -13.06404 -12.91259 -12.88174 -12.54906 -12.43413 -12.40697 -11.96754 -11.86138 -11.59670 -11.51778 -11.26472 -10.98579 -10.84502 -10.59223 -8.94247 -8.37781 -6.45834 -0.09880 0.85052 0.96011 1.21107 1.34916 1.37115 1.49678 1.81787 2.31034 2.64835 2.88682 2.96934 3.20451 3.40162 3.43690 3.77489 3.79715 3.97368 4.09631 4.10836 4.13313 4.32773 4.38167 4.44298 4.53758 4.55684 4.59748 4.82343 4.86445 4.92655 4.95755 5.00915 5.14263 5.22766 5.27712 5.38610 5.47054 5.53279 5.69215 6.09265 6.11608 6.19348 6.53459 6.59921 7.03707 7.19358 8.78004 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.030702 B = 0.002700 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.787597 B =10369.093879 C =10640.810607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.031 3.969 3 C -0.224 4.224 4 C 0.129 3.871 5 N -0.486 5.486 6 C 0.081 3.919 7 C 0.140 3.860 8 C -0.145 4.145 9 O -0.539 6.539 10 C 0.436 3.564 11 O -0.523 6.523 12 O -0.351 6.351 13 C 0.090 3.910 14 C -0.004 4.004 15 C -0.542 4.542 16 H 0.038 0.962 17 C 0.014 3.986 18 N -0.941 5.941 19 Si 0.951 3.049 20 H -0.261 1.261 21 H -0.279 1.279 22 H -0.250 1.250 23 C 0.505 3.495 24 O -0.603 6.603 25 C -0.287 4.287 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.184 0.816 30 H 0.203 0.797 31 H 0.143 0.857 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.390 0.610 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.030 0.970 40 H 0.034 0.966 41 H 0.271 0.729 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.875 9.845 9.378 34.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.027 3.973 3 C -0.246 4.246 4 C 0.004 3.996 5 N -0.195 5.195 6 C -0.042 4.042 7 C 0.096 3.904 8 C -0.201 4.201 9 O -0.346 6.346 10 C 0.279 3.721 11 O -0.413 6.413 12 O -0.267 6.267 13 C 0.017 3.983 14 C -0.041 4.041 15 C -0.579 4.579 16 H 0.057 0.943 17 C -0.184 4.184 18 N -0.581 5.581 19 Si 0.774 3.226 20 H -0.186 1.186 21 H -0.205 1.205 22 H -0.173 1.173 23 C 0.310 3.690 24 O -0.490 6.490 25 C -0.309 4.309 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.115 0.885 29 H 0.202 0.798 30 H 0.220 0.780 31 H 0.160 0.840 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.240 0.760 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -31.346 9.704 9.171 34.071 hybrid contribution 1.170 -1.182 -0.090 1.666 sum -30.175 8.521 9.081 32.644 Atomic orbital electron populations 1.21035 0.88224 1.04662 1.04111 1.20626 0.98372 0.92169 0.86116 1.21067 0.92210 0.99789 1.11550 1.22754 0.94340 0.89831 0.92704 1.45258 1.07402 1.07652 1.59234 1.22381 0.79007 1.07668 0.95150 1.21572 0.83171 0.91187 0.94459 1.22015 1.03608 0.92781 1.01745 1.86575 1.75670 1.15705 1.56658 1.25025 0.92984 0.74132 0.80005 1.90657 1.71429 1.43570 1.35610 1.86555 1.23184 1.73932 1.42989 1.23044 0.73768 1.01313 1.00161 1.19459 0.93945 0.97273 0.93451 1.21083 0.90408 1.42107 1.04352 0.94337 1.25908 0.95304 0.95279 1.01951 1.70028 1.06310 1.47679 1.34044 0.85645 0.79307 0.78994 0.78690 1.18585 1.20475 1.17334 1.17476 0.90111 0.82656 0.78739 1.90887 1.70079 1.32124 1.55926 1.21900 0.91531 1.00759 1.16701 0.89016 0.90864 0.88476 0.79833 0.77975 0.83952 0.89349 0.87188 0.90908 0.88443 0.75992 0.91676 0.92328 0.95124 0.94813 0.91992 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.03 71.23 0.71 0.06 16 2 C 0.03 0.36 5.89 -19.82 -0.12 0.24 16 3 C -0.22 -1.56 9.71 22.08 0.21 -1.34 16 4 C 0.13 1.13 8.11 83.42 0.68 1.80 16 5 N -0.49 -8.63 2.34 -650.97 -1.52 -10.15 16 6 C 0.08 1.59 4.19 86.38 0.36 1.96 16 7 C 0.14 3.29 1.12 -11.54 -0.01 3.27 16 8 C -0.14 -2.39 8.13 71.98 0.58 -1.80 16 9 O -0.54 -15.23 11.56 -127.24 -1.47 -16.70 16 10 C 0.44 13.76 6.80 71.24 0.48 14.25 16 11 O -0.52 -18.10 15.84 21.96 0.35 -17.75 16 12 O -0.35 -13.20 9.97 -46.46 -0.46 -13.67 16 13 C 0.09 3.87 5.40 71.98 0.39 4.26 16 14 C 0.00 -0.18 4.42 29.85 0.13 -0.05 16 15 C -0.54 -31.53 9.66 25.60 0.25 -31.28 16 16 H 0.04 2.45 7.99 -2.91 -0.02 2.42 16 17 C 0.01 0.82 5.47 84.66 0.46 1.28 16 18 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 19 Si 0.95 44.23 27.47 68.60 1.88 46.12 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 23 C 0.50 12.65 6.90 84.82 0.59 13.23 16 24 O -0.60 -20.29 15.38 3.58 0.06 -20.23 16 25 C -0.29 -5.64 9.65 22.40 0.22 -5.43 16 26 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.07 0.42 8.09 -2.39 -0.02 0.40 16 28 H 0.10 0.11 8.10 -2.39 -0.02 0.09 16 29 H 0.18 -0.10 8.06 -2.91 -0.02 -0.12 16 30 H 0.20 0.06 7.92 -2.91 -0.02 0.03 16 31 H 0.14 1.98 7.74 -2.39 -0.02 1.97 16 32 H 0.09 2.18 7.39 -2.39 -0.02 2.16 16 33 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 35 H 0.10 1.27 6.28 -2.39 -0.01 1.25 16 36 H 0.39 11.08 8.40 -74.06 -0.62 10.46 16 37 H 0.06 2.77 8.13 -2.39 -0.02 2.75 16 38 H 0.06 2.57 8.13 -2.38 -0.02 2.55 16 39 H 0.03 1.47 7.20 -2.39 -0.02 1.45 16 40 H 0.03 1.57 7.57 -2.38 -0.02 1.55 16 41 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -80.35 354.56 4.43 -75.93 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.36 Total: 14.34 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 4.94 Total: 0.45 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -1.22 Total: -68.48 kcal Atomic # 8 Polarization: -66.82 SS G_CDS: -1.53 Total: -68.35 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.12 kcal Total: -80.35 4.43 -75.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790693341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.344 kcal (2) G-P(sol) polarization free energy of solvation -80.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds