Wall clock time and date at job start Fri Apr 10 2020 18:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99814 * 2 1 4 4 C 1.53007 * 109.46737 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.46834 * 184.99880 * 4 3 2 6 6 C 1.52998 * 109.47058 * 305.00368 * 4 3 2 7 7 O 1.42894 * 109.47149 * 54.99897 * 6 4 3 8 8 N 1.46502 * 109.46927 * 65.00327 * 4 3 2 9 9 C 1.34766 * 120.00112 * 154.99717 * 8 4 3 10 10 O 1.21288 * 119.99773 * 0.02562 * 9 8 4 11 11 C 1.50699 * 120.00355 * 179.97438 * 9 8 4 12 12 C 1.50703 * 109.47198 * 180.02562 * 11 9 8 13 13 C 1.38324 * 119.96698 * 269.72284 * 12 11 9 14 14 C 1.38279 * 120.13892 * 179.76915 * 13 12 11 15 15 C 1.38117 * 120.06928 * 0.50771 * 14 13 12 16 16 C 1.38861 * 119.92862 * 359.75068 * 15 14 13 17 17 O 1.35754 * 120.06989 * 179.97438 * 16 15 14 18 18 C 1.34835 * 116.99776 * 354.48602 * 17 16 15 19 19 H 1.07999 * 120.00053 * 5.06651 * 18 17 16 20 20 C 1.38656 * 119.99833 * 185.05259 * 18 17 16 21 21 N 1.31552 * 120.00324 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99919 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47160 * 60.00314 * 22 20 18 24 24 H 1.48499 * 109.47346 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47116 * 300.00646 * 22 20 18 26 26 C 1.38076 * 119.96522 * 90.00386 * 12 11 9 27 27 H 1.08999 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47147 * 60.00018 * 1 2 3 29 29 H 1.08995 * 109.47364 * 299.99886 * 1 2 3 30 30 H 1.08994 * 109.47442 * 299.99860 * 3 2 1 31 31 H 1.08998 * 109.47033 * 60.00434 * 3 2 1 32 32 H 1.09005 * 109.46601 * 175.00118 * 6 4 3 33 33 H 1.08999 * 109.47098 * 294.99917 * 6 4 3 34 34 H 0.96703 * 113.99985 * 179.97438 * 7 6 4 35 35 H 0.96998 * 120.00169 * 334.99808 * 8 4 3 36 36 H 1.09000 * 109.47644 * 300.00310 * 11 9 8 37 37 H 1.09006 * 109.46865 * 60.00224 * 11 9 8 38 38 H 1.07998 * 119.93009 * 0.02562 * 13 12 11 39 39 H 1.07999 * 119.96560 * 180.26312 * 14 13 12 40 40 H 1.08003 * 120.03660 * 179.72335 * 15 14 13 41 41 H 0.96992 * 120.00429 * 179.97438 * 21 20 18 42 42 H 1.08004 * 120.03487 * 359.95540 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1765 0.0902 6 6 3.9780 0.3197 1.1825 7 8 3.3066 -0.9405 1.1283 8 7 3.9767 0.5640 -1.2509 9 6 5.2208 0.7939 -1.7152 10 8 5.9753 1.5144 -1.0966 11 6 5.6748 0.1551 -3.0023 12 6 7.0938 0.5694 -3.2956 13 6 7.3410 1.7038 -4.0475 14 6 8.6416 2.0898 -4.3146 15 6 9.6982 1.3375 -3.8400 16 6 9.4533 0.1952 -3.0894 17 8 10.4896 -0.5467 -2.6219 18 6 11.7275 -0.1860 -3.0162 19 1 11.8672 0.7069 -3.6076 20 6 12.8212 -0.9612 -2.6622 21 7 12.6511 -2.0489 -1.9420 22 14 14.5363 -0.4611 -3.2079 23 1 14.8573 0.8823 -2.6625 24 1 15.5239 -1.4492 -2.7041 25 1 14.5913 -0.4192 -4.6913 26 6 8.1457 -0.1870 -2.8183 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5138 0.8899 30 1 1.6886 1.8464 -0.8899 31 1 1.6886 1.8463 0.8900 32 1 5.0552 0.1600 1.1326 33 1 3.7284 0.8245 2.1158 34 1 3.5399 -1.5418 1.8488 35 1 3.3733 -0.0125 -1.7455 36 1 5.6258 -0.9296 -2.9067 37 1 5.0260 0.4777 -3.8167 38 1 6.5165 2.2915 -4.4232 39 1 8.8315 2.9784 -4.8984 40 1 10.7138 1.6371 -4.0528 41 1 13.4162 -2.5914 -1.6947 42 1 7.9521 -1.0748 -2.2345 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794145935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:01 Heat of formation + Delta-G solvation = -130.268406 kcal Electronic energy + Delta-G solvation = -25039.804873 eV Core-core repulsion = 21179.173285 eV Total energy + Delta-G solvation = -3860.631588 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.99246 -38.89663 -38.12767 -36.67823 -36.30039 -34.42418 -32.37069 -32.01006 -30.45940 -29.07432 -27.25374 -26.73382 -25.50158 -25.16035 -22.07309 -21.48232 -20.67467 -20.12070 -17.71792 -17.61258 -17.08363 -16.72061 -16.60257 -16.35825 -15.58900 -15.29147 -14.90017 -14.76432 -14.36910 -14.30228 -14.05189 -13.73652 -13.45077 -13.25932 -12.95021 -12.73287 -12.61544 -12.34645 -12.15809 -11.74945 -11.64142 -11.46282 -11.19639 -11.19169 -10.76284 -10.70978 -10.54390 -10.40665 -10.10305 -9.81940 -9.61675 -9.26307 -9.03583 -8.76432 -7.97489 -7.13366 -6.37132 -3.96124 2.18231 2.47910 2.83690 3.17212 3.17937 3.21507 3.23393 3.56458 4.02911 4.20337 4.53027 4.64323 4.81942 4.99685 5.00273 5.10109 5.12746 5.17570 5.18852 5.23383 5.28293 5.34128 5.42307 5.57788 5.63444 5.68107 5.76200 5.85092 6.01765 6.26086 6.42615 6.46262 6.74764 6.92875 7.00655 7.14907 7.35973 7.44917 7.52154 7.59438 7.64076 7.91848 8.08098 8.40494 9.08558 9.80358 10.81256 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.002659 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.912973 B =10528.038893 C =11246.755444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.056 3.944 4 C 0.151 3.849 5 H 0.111 0.889 6 C 0.065 3.935 7 O -0.545 6.545 8 N -0.723 5.723 9 C 0.515 3.485 10 O -0.525 6.525 11 C -0.094 4.094 12 C -0.031 4.031 13 C -0.197 4.197 14 C -0.075 4.075 15 C -0.231 4.231 16 C 0.155 3.845 17 O -0.180 6.180 18 C -0.390 4.390 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.174 4.174 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.369 0.631 35 H 0.405 0.595 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.269 0.731 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.705 4.994 2.485 23.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C -0.022 4.022 4 C 0.046 3.954 5 H 0.129 0.871 6 C -0.014 4.014 7 O -0.348 6.348 8 N -0.376 5.376 9 C 0.301 3.699 10 O -0.400 6.400 11 C -0.133 4.133 12 C -0.032 4.032 13 C -0.216 4.216 14 C -0.093 4.093 15 C -0.251 4.251 16 C 0.101 3.899 17 O -0.084 6.084 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.501 5.501 22 Si 0.765 3.235 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.193 4.193 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.214 0.786 35 H 0.240 0.760 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.143 0.857 41 H 0.079 0.921 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.128 5.246 2.652 22.896 hybrid contribution 0.628 0.113 0.088 0.644 sum -21.501 5.360 2.740 22.327 Atomic orbital electron populations 1.22729 0.82100 1.02595 0.99375 1.88188 1.18296 1.25735 1.95117 1.22727 0.92590 0.86191 1.00659 1.21118 0.92453 0.97375 0.84455 0.87139 1.22489 0.96402 0.85850 0.96670 1.86687 1.68922 1.26231 1.52968 1.45923 1.15345 1.51751 1.24616 1.20793 0.81004 0.81054 0.87001 1.90748 1.52990 1.37101 1.59138 1.20579 0.95600 1.01980 0.95179 1.18670 0.91831 0.95245 0.97452 1.20344 0.96094 0.98954 1.06172 1.20669 0.92483 0.97993 0.98200 1.21165 0.99599 0.98302 1.06016 1.19279 0.88826 0.90362 0.91396 1.83980 1.13292 1.49651 1.61472 1.21267 0.80359 1.10326 1.34735 0.89204 1.25266 0.99422 0.95262 0.96601 1.70028 1.31605 1.13780 1.34672 0.85796 0.80218 0.78460 0.79024 1.19558 1.20340 1.19553 1.19949 0.89812 1.02611 1.06966 0.89729 0.94594 0.94549 0.92858 0.92324 0.92921 0.93525 0.78605 0.75987 0.88199 0.88458 0.87980 0.87532 0.85665 0.92082 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.36 -3.36 8.00 -58.58 -0.47 -3.83 16 3 C 0.06 0.46 5.68 37.16 0.21 0.67 16 4 C 0.15 1.59 2.86 -67.93 -0.19 1.39 16 5 H 0.11 1.21 7.58 -51.93 -0.39 0.82 16 6 C 0.07 0.70 6.85 37.16 0.25 0.96 16 7 O -0.54 -5.80 11.17 -58.58 -0.65 -6.45 16 8 N -0.72 -8.29 5.01 -53.81 -0.27 -8.56 16 9 C 0.51 7.71 7.79 -10.99 -0.09 7.62 16 10 O -0.53 -10.21 15.70 5.55 0.09 -10.12 16 11 C -0.09 -1.31 5.83 -29.03 -0.17 -1.48 16 12 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16 13 C -0.20 -3.65 9.70 -39.53 -0.38 -4.03 16 14 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 15 C -0.23 -5.35 9.17 -39.40 -0.36 -5.71 16 16 C 0.15 3.96 6.65 -39.11 -0.26 3.70 16 17 O -0.18 -5.37 9.76 0.02 0.00 -5.37 16 18 C -0.39 -11.31 9.49 30.89 0.29 -11.01 16 19 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.87 -26.08 13.67 55.48 0.76 -25.32 16 22 Si 0.94 21.10 29.55 -169.99 -5.02 16.08 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 26 C -0.17 -3.93 9.64 -39.40 -0.38 -4.31 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.37 2.67 9.12 45.56 0.42 3.08 16 35 H 0.41 3.97 8.38 -40.82 -0.34 3.63 16 36 H 0.10 1.25 8.08 -51.93 -0.42 0.83 16 37 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 38 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.13 2.86 5.64 -52.48 -0.30 2.57 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.11 2.50 8.06 -52.48 -0.42 2.08 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -36.22 360.30 -6.15 -42.36 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.09 Total: 8.63 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -0.91 Total: -12.85 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.49 Total: -33.88 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -1.04 Total: -25.77 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.22 -6.15 -42.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794145935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.905 kcal (2) G-P(sol) polarization free energy of solvation -36.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds