Wall clock time and date at job start Fri Apr 10 2020 18:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99814 * 2 1 4 4 C 1.53007 * 109.46737 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.46834 * 184.99880 * 4 3 2 6 6 C 1.52998 * 109.47058 * 305.00368 * 4 3 2 7 7 O 1.42894 * 109.47149 * 54.99897 * 6 4 3 8 8 N 1.46502 * 109.46927 * 65.00327 * 4 3 2 9 9 C 1.34766 * 120.00112 * 154.99717 * 8 4 3 10 10 O 1.21288 * 119.99773 * 0.02562 * 9 8 4 11 11 C 1.50699 * 120.00355 * 179.97438 * 9 8 4 12 12 C 1.50703 * 109.47198 * 180.02562 * 11 9 8 13 13 C 1.38324 * 119.96698 * 269.72284 * 12 11 9 14 14 C 1.38279 * 120.13892 * 179.76915 * 13 12 11 15 15 C 1.38117 * 120.06928 * 0.50771 * 14 13 12 16 16 C 1.38861 * 119.92862 * 359.75068 * 15 14 13 17 17 O 1.35754 * 120.06989 * 179.97438 * 16 15 14 18 18 C 1.34835 * 116.99776 * 354.48602 * 17 16 15 19 19 H 1.07999 * 120.00053 * 5.06651 * 18 17 16 20 20 C 1.38656 * 119.99833 * 185.05259 * 18 17 16 21 21 N 1.31552 * 120.00324 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99919 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47160 * 60.00314 * 22 20 18 24 24 H 1.48499 * 109.47346 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47116 * 300.00646 * 22 20 18 26 26 C 1.38076 * 119.96522 * 90.00386 * 12 11 9 27 27 H 1.08999 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47147 * 60.00018 * 1 2 3 29 29 H 1.08995 * 109.47364 * 299.99886 * 1 2 3 30 30 H 1.08994 * 109.47442 * 299.99860 * 3 2 1 31 31 H 1.08998 * 109.47033 * 60.00434 * 3 2 1 32 32 H 1.09005 * 109.46601 * 175.00118 * 6 4 3 33 33 H 1.08999 * 109.47098 * 294.99917 * 6 4 3 34 34 H 0.96703 * 113.99985 * 179.97438 * 7 6 4 35 35 H 0.96998 * 120.00169 * 334.99808 * 8 4 3 36 36 H 1.09000 * 109.47644 * 300.00310 * 11 9 8 37 37 H 1.09006 * 109.46865 * 60.00224 * 11 9 8 38 38 H 1.07998 * 119.93009 * 0.02562 * 13 12 11 39 39 H 1.07999 * 119.96560 * 180.26312 * 14 13 12 40 40 H 1.08003 * 120.03660 * 179.72335 * 15 14 13 41 41 H 0.96992 * 120.00429 * 179.97438 * 21 20 18 42 42 H 1.08004 * 120.03487 * 359.95540 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1765 0.0902 6 6 3.9780 0.3197 1.1825 7 8 3.3066 -0.9405 1.1283 8 7 3.9767 0.5640 -1.2509 9 6 5.2208 0.7939 -1.7152 10 8 5.9753 1.5144 -1.0966 11 6 5.6748 0.1551 -3.0023 12 6 7.0938 0.5694 -3.2956 13 6 7.3410 1.7038 -4.0475 14 6 8.6416 2.0898 -4.3146 15 6 9.6982 1.3375 -3.8400 16 6 9.4533 0.1952 -3.0894 17 8 10.4896 -0.5467 -2.6219 18 6 11.7275 -0.1860 -3.0162 19 1 11.8672 0.7069 -3.6076 20 6 12.8212 -0.9612 -2.6622 21 7 12.6511 -2.0489 -1.9420 22 14 14.5363 -0.4611 -3.2079 23 1 14.8573 0.8823 -2.6625 24 1 15.5239 -1.4492 -2.7041 25 1 14.5913 -0.4192 -4.6913 26 6 8.1457 -0.1870 -2.8183 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5138 0.8899 30 1 1.6886 1.8464 -0.8899 31 1 1.6886 1.8463 0.8900 32 1 5.0552 0.1600 1.1326 33 1 3.7284 0.8245 2.1158 34 1 3.5399 -1.5418 1.8488 35 1 3.3733 -0.0125 -1.7455 36 1 5.6258 -0.9296 -2.9067 37 1 5.0260 0.4777 -3.8167 38 1 6.5165 2.2915 -4.4232 39 1 8.8315 2.9784 -4.8984 40 1 10.7138 1.6371 -4.0528 41 1 13.4162 -2.5914 -1.6947 42 1 7.9521 -1.0748 -2.2345 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794145935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:00 Heat of formation + Delta-G solvation = -158.520710 kcal Electronic energy + Delta-G solvation = -25041.029985 eV Core-core repulsion = 21179.173285 eV Total energy + Delta-G solvation = -3861.856700 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.21446 -40.51741 -39.06880 -38.13871 -37.35815 -35.41927 -34.34071 -33.53133 -31.50975 -30.78052 -28.35439 -27.69386 -27.20030 -26.15612 -23.44299 -23.08430 -21.95559 -21.30142 -19.50265 -18.81216 -18.57218 -17.88066 -17.51872 -17.02915 -16.80043 -16.58686 -16.22151 -16.12607 -15.93719 -15.55962 -15.38839 -15.02564 -14.93715 -14.56834 -14.32144 -14.01174 -13.82946 -13.58476 -13.36961 -13.00689 -12.93012 -12.75209 -12.44522 -12.37724 -12.26427 -12.21261 -12.12213 -11.92626 -11.20258 -11.06504 -10.80359 -10.72427 -10.42787 -10.05335 -9.62545 -8.96856 -8.46450 -6.15247 0.53277 0.77039 1.33873 1.45499 1.50814 1.68400 2.17896 2.21520 2.85004 2.94240 3.19257 3.42660 3.46226 3.78069 3.84331 4.11064 4.15205 4.16467 4.32857 4.42528 4.45100 4.45801 4.48797 4.59267 4.64345 4.65818 4.66887 4.74397 4.74928 4.84437 4.98719 5.08634 5.13464 5.31769 5.50570 5.66289 5.73859 5.76748 6.03331 6.24768 6.37007 6.61948 6.94452 6.97821 7.32008 7.79876 8.77111 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.002659 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.912973 B =10528.038893 C =11246.755444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.379 6.379 3 C 0.063 3.937 4 C 0.144 3.856 5 H 0.105 0.895 6 C 0.069 3.931 7 O -0.554 6.554 8 N -0.704 5.704 9 C 0.516 3.484 10 O -0.578 6.578 11 C -0.092 4.092 12 C -0.024 4.024 13 C -0.180 4.180 14 C -0.073 4.073 15 C -0.247 4.247 16 C 0.112 3.888 17 O -0.235 6.235 18 C -0.415 4.415 19 H 0.101 0.899 20 C -0.025 4.025 21 N -0.923 5.923 22 Si 1.021 2.979 23 H -0.258 1.258 24 H -0.270 1.270 25 H -0.255 1.255 26 C -0.194 4.194 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.019 0.981 33 H 0.067 0.933 34 H 0.382 0.618 35 H 0.417 0.583 36 H 0.115 0.885 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.118 0.882 41 H 0.273 0.727 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.337 6.891 0.954 26.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.297 6.297 3 C -0.015 4.015 4 C 0.039 3.961 5 H 0.123 0.877 6 C -0.011 4.011 7 O -0.359 6.359 8 N -0.357 5.357 9 C 0.303 3.697 10 O -0.457 6.457 11 C -0.131 4.131 12 C -0.025 4.025 13 C -0.198 4.198 14 C -0.091 4.091 15 C -0.266 4.266 16 C 0.062 3.938 17 O -0.142 6.142 18 C -0.491 4.491 19 H 0.118 0.882 20 C -0.222 4.222 21 N -0.562 5.562 22 Si 0.839 3.161 23 H -0.183 1.183 24 H -0.195 1.195 25 H -0.180 1.180 26 C -0.213 4.213 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.229 0.771 35 H 0.253 0.747 36 H 0.133 0.867 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.164 0.836 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -24.861 7.145 1.106 25.891 hybrid contribution 1.069 -0.395 0.550 1.265 sum -23.792 6.751 1.655 24.787 Atomic orbital electron populations 1.22848 0.80684 1.03192 1.00345 1.88144 1.19869 1.26350 1.95350 1.22682 0.90492 0.86158 1.02144 1.21276 0.94373 0.96845 0.83616 0.87709 1.22417 0.94422 0.86330 0.97922 1.86646 1.68776 1.26457 1.54036 1.45787 1.14259 1.50932 1.24725 1.20882 0.81465 0.80379 0.86925 1.90741 1.54559 1.39778 1.60660 1.20685 0.93049 1.03013 0.96357 1.19184 0.93414 0.94383 0.95513 1.20974 0.96995 0.98097 1.03722 1.21139 0.92025 0.98479 0.97435 1.21298 1.00616 0.98258 1.06457 1.19873 0.89104 0.91601 0.93249 1.83940 1.14302 1.51886 1.64087 1.21801 0.80897 1.11110 1.35298 0.88206 1.26632 1.04151 0.95024 0.96386 1.70184 1.33170 1.15702 1.37114 0.84630 0.73722 0.78512 0.79207 1.18279 1.19485 1.17962 1.20202 0.90015 1.03359 1.07735 0.89418 0.93431 0.93729 0.91427 0.90729 0.96254 0.91543 0.77055 0.74660 0.86684 0.83859 0.83367 0.83574 0.86391 0.91847 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.38 -6.16 8.00 -126.65 -1.01 -7.17 16 3 C 0.06 0.85 5.68 71.98 0.41 1.26 16 4 C 0.14 2.78 2.86 44.99 0.13 2.91 16 5 H 0.11 2.18 7.58 -2.39 -0.02 2.16 16 6 C 0.07 1.43 6.85 71.98 0.49 1.92 16 7 O -0.55 -11.13 11.17 -126.65 -1.41 -12.54 16 8 N -0.70 -14.61 5.01 -442.53 -2.22 -16.83 16 9 C 0.52 14.51 7.79 87.66 0.68 15.19 16 10 O -0.58 -22.26 15.70 -3.06 -0.05 -22.31 16 11 C -0.09 -2.30 5.83 29.10 0.17 -2.13 16 12 C -0.02 -0.88 4.37 -19.88 -0.09 -0.97 16 13 C -0.18 -6.01 9.70 22.30 0.22 -5.80 16 14 C -0.07 -2.70 10.04 22.25 0.22 -2.47 16 15 C -0.25 -11.60 9.17 22.39 0.21 -11.40 16 16 C 0.11 6.02 6.65 22.58 0.15 6.17 16 17 O -0.24 -15.04 9.76 -22.83 -0.22 -15.27 16 18 C -0.41 -25.39 9.49 67.92 0.64 -24.75 16 19 H 0.10 5.61 5.20 -2.91 -0.02 5.60 16 20 C -0.02 -1.48 5.49 84.83 0.47 -1.01 16 21 N -0.92 -58.79 13.67 21.61 0.30 -58.50 16 22 Si 1.02 44.45 29.55 68.60 2.03 46.48 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 26 C -0.19 -9.05 9.64 22.39 0.22 -8.83 16 27 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.38 8.14 -2.39 -0.02 0.37 16 29 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.02 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.38 5.21 9.12 -74.06 -0.68 4.53 16 35 H 0.42 6.88 8.38 -92.71 -0.78 6.11 16 36 H 0.12 2.59 8.08 -2.39 -0.02 2.57 16 37 H 0.14 2.31 8.08 -2.38 -0.02 2.29 16 38 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 40 H 0.12 5.57 5.64 -2.91 -0.02 5.56 16 41 H 0.27 15.87 8.31 -92.71 -0.77 15.09 16 42 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -85.58 360.30 2.18 -83.40 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: -0.40 Total: 31.12 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 5.17 Total: -28.39 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -1.92 Total: -75.32 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -2.70 Total: -57.29 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -85.58 2.18 -83.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794145935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.117 kcal (2) G-P(sol) polarization free energy of solvation -85.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds