Wall clock time and date at job start Fri Apr 10 2020 17:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 O 1.20923 * 124.56998 * 2 1 4 4 C 1.34169 * 112.19756 * 179.97438 * 3 2 1 5 5 C 1.48199 * 126.38575 * 180.02562 * 4 3 2 6 6 O 1.21500 * 119.99871 * 179.97438 * 5 4 3 7 7 N 1.34769 * 120.00277 * 359.97438 * 5 4 3 8 8 C 1.46504 * 120.00108 * 179.97438 * 7 5 4 9 9 H 1.08995 * 110.63993 * 325.69825 * 8 7 5 10 10 C 1.54326 * 110.71700 * 88.84540 * 8 7 5 11 11 N 1.47026 * 107.27273 * 96.17228 * 10 8 7 12 12 C 1.36937 * 125.64783 * 178.90421 * 11 10 8 13 13 H 1.07990 * 119.99573 * 180.02562 * 12 11 10 14 14 C 1.38812 * 120.00016 * 0.02562 * 12 11 10 15 15 N 1.31629 * 120.00017 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00150 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47181 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47295 * 120.00048 * 16 14 12 19 19 H 1.48492 * 109.47340 * 240.00206 * 16 14 12 20 20 C 1.47423 * 108.69940 * 358.93686 * 11 10 8 21 21 C 1.55161 * 110.72001 * 202.55705 * 8 7 5 22 22 C 1.53010 * 111.00128 * 35.21566 * 21 8 7 23 23 C 1.53005 * 111.00160 * 159.06201 * 21 8 7 24 24 C 1.36322 * 107.22522 * 359.97438 * 4 3 2 25 25 C 1.34838 * 124.56872 * 180.29269 * 2 1 3 26 26 O 1.21973 * 127.14672 * 0.02660 * 25 2 1 27 27 H 1.09001 * 109.47301 * 0.03492 * 1 2 3 28 28 H 1.09006 * 109.46776 * 120.02360 * 1 2 3 29 29 H 1.08997 * 109.47777 * 240.02810 * 1 2 3 30 30 H 0.97006 * 120.00172 * 359.97438 * 7 5 4 31 31 H 1.09003 * 109.87641 * 215.58745 * 10 8 7 32 32 H 1.09002 * 109.88281 * 336.74807 * 10 8 7 33 33 H 0.97000 * 119.99751 * 180.02562 * 15 14 12 34 34 H 1.08998 * 110.36451 * 142.97105 * 20 11 10 35 35 H 1.09001 * 110.36831 * 265.17821 * 20 11 10 36 36 H 1.09000 * 109.46808 * 59.99829 * 22 21 8 37 37 H 1.08997 * 109.46521 * 179.97438 * 22 21 8 38 38 H 1.08995 * 109.47108 * 299.99461 * 22 21 8 39 39 H 1.08995 * 109.46673 * 60.00640 * 23 21 8 40 40 H 1.08999 * 109.46517 * 180.02562 * 23 21 8 41 41 H 1.08998 * 109.47265 * 300.00457 * 23 21 8 42 42 H 1.08002 * 127.99075 * 179.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 8 2.1511 0.9957 0.0000 4 6 3.4616 0.7082 0.0006 5 6 4.5760 1.6852 0.0013 6 8 5.7264 1.2945 0.0022 7 7 4.3133 3.0071 0.0008 8 6 5.4149 3.9729 0.0021 9 1 6.2586 3.5926 0.5780 10 6 5.8464 4.3108 -1.4406 11 7 5.1539 5.5496 -1.8245 12 6 5.2829 6.1972 -3.0242 13 1 4.7288 7.1053 -3.2098 14 6 6.1259 5.6862 -4.0015 15 7 6.8009 4.5791 -3.7753 16 14 6.3025 6.5699 -5.6377 17 1 5.4444 7.7818 -5.6409 18 1 7.7197 6.9669 -5.8355 19 1 5.8843 5.6638 -6.7373 20 6 4.2982 5.9796 -0.7036 21 6 4.9436 5.3426 0.5582 22 6 3.9120 5.1563 1.6728 23 6 6.1313 6.1742 1.0466 24 6 3.5769 -0.6501 0.0015 25 6 2.2300 -1.1103 -0.0057 26 8 1.8473 -2.2684 -0.0120 27 1 -0.3634 1.0277 -0.0006 28 1 -0.3633 -0.5142 -0.8898 29 1 -0.3634 -0.5134 0.8902 30 1 3.3948 3.3191 -0.0003 31 1 6.9252 4.4619 -1.4790 32 1 5.5591 3.5020 -2.1125 33 1 7.3902 4.2223 -4.4581 34 1 4.2984 7.0665 -0.6215 35 1 3.2816 5.6103 -0.8390 36 1 4.3560 4.5828 2.4865 37 1 3.5990 6.1318 2.0448 38 1 3.0467 4.6216 1.2813 39 1 6.8166 6.3508 0.2176 40 1 5.7726 7.1288 1.4315 41 1 6.6508 5.6354 1.8390 42 1 4.4813 -1.2405 0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974502118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:35 Heat of formation + Delta-G solvation = 18.885195 kcal Electronic energy + Delta-G solvation = -26508.064862 eV Core-core repulsion = 22686.193811 eV Total energy + Delta-G solvation = -3821.871051 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.23756 -41.40570 -39.57865 -39.37233 -35.80374 -35.40652 -34.60258 -33.40609 -32.59168 -30.22776 -28.88034 -27.97598 -27.38246 -25.68260 -24.70863 -24.20864 -22.20740 -21.47945 -20.45398 -19.57811 -19.50714 -18.68243 -18.32077 -17.55253 -16.79903 -16.53125 -16.18972 -16.08725 -15.66663 -15.52686 -15.28706 -15.03742 -14.81283 -14.74977 -14.24767 -14.01130 -13.80732 -13.66745 -13.43427 -13.14155 -12.95074 -12.84646 -12.71462 -12.56338 -12.07473 -11.92267 -11.81791 -11.65531 -11.55230 -11.34446 -11.27308 -11.12429 -10.74453 -10.20271 -9.69704 -8.86973 -7.83026 -5.18348 -0.62838 0.50153 1.36752 1.46206 1.46497 1.56681 1.57730 1.84553 2.23047 2.50330 3.35488 3.37439 3.48479 3.64744 3.74443 3.84733 3.95376 4.08449 4.27676 4.33556 4.39137 4.51259 4.62619 4.66244 4.68588 4.81091 4.85314 4.91305 4.97143 5.02647 5.14112 5.19738 5.25202 5.39355 5.48638 5.59201 5.64372 5.74717 6.15033 6.19858 6.43421 6.78654 6.82751 7.10927 7.79918 8.42974 9.26688 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.014391 B = 0.004144 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.145232 B = 6755.691207 C = 7585.619556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.443 5.443 3 O 0.015 5.985 4 C 0.044 3.956 5 C 0.603 3.397 6 O -0.530 6.530 7 N -0.677 5.677 8 C 0.133 3.867 9 H 0.094 0.906 10 C 0.189 3.811 11 N -0.621 5.621 12 C -0.233 4.233 13 H 0.087 0.913 14 C -0.067 4.067 15 N -0.953 5.953 16 Si 0.972 3.028 17 H -0.262 1.262 18 H -0.296 1.296 19 H -0.298 1.298 20 C 0.136 3.864 21 C -0.073 4.073 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.248 4.248 25 C 0.471 3.529 26 O -0.562 6.562 27 H 0.130 0.870 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.416 0.584 31 H 0.013 0.987 32 H 0.004 0.996 33 H 0.243 0.757 34 H 0.048 0.952 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.031 0.969 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.252 -1.303 13.856 19.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.204 5.204 3 O 0.003 5.997 4 C -0.015 4.015 5 C 0.385 3.615 6 O -0.407 6.407 7 N -0.328 5.328 8 C 0.028 3.972 9 H 0.112 0.888 10 C 0.063 3.937 11 N -0.347 5.347 12 C -0.362 4.362 13 H 0.105 0.895 14 C -0.260 4.260 15 N -0.603 5.603 16 Si 0.802 3.198 17 H -0.186 1.186 18 H -0.223 1.223 19 H -0.225 1.225 20 C 0.011 3.989 21 C -0.074 4.074 22 C -0.184 4.184 23 C -0.182 4.182 24 C -0.273 4.273 25 C 0.270 3.730 26 O -0.447 6.447 27 H 0.149 0.851 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.255 0.745 31 H 0.031 0.969 32 H 0.023 0.977 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -12.908 -1.935 13.670 18.901 hybrid contribution 0.416 0.123 -1.603 1.660 sum -12.492 -1.812 12.068 17.463 Atomic orbital electron populations 1.22623 0.67758 1.07685 1.05818 1.46400 1.07140 0.99043 1.67776 1.84031 1.14615 1.20858 1.80197 1.23086 0.81807 0.95719 1.00898 1.16769 0.85320 0.81868 0.77555 1.90891 1.19777 1.79022 1.51025 1.45800 1.11591 1.04017 1.71358 1.22352 0.88969 0.88718 0.97123 0.88829 1.21149 0.94482 0.87847 0.90262 1.44677 1.50463 1.26377 1.13187 1.19487 1.20863 1.05350 0.90470 0.89524 1.25594 0.99850 0.98586 1.01942 1.70197 1.32588 1.23217 1.34254 0.85086 0.77115 0.77946 0.79680 1.18570 1.22326 1.22536 1.22008 0.92956 0.97931 0.85972 1.22087 0.97659 0.92182 0.95481 1.21681 0.97113 1.03253 0.96350 1.21600 0.96437 0.99945 1.00228 1.23443 0.99998 0.93638 1.10224 1.18359 0.87083 0.85600 0.81913 1.90928 1.79678 1.17187 1.56879 0.85148 0.88531 0.87709 0.74534 0.96890 0.97740 0.94723 0.93320 0.94892 0.91309 0.90254 0.91769 0.95007 0.90341 0.91266 0.78691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.02 11.18 127.77 1.43 2.45 16 2 N -0.44 -9.24 3.68 -492.74 -1.82 -11.06 16 3 O 0.02 0.32 10.69 70.40 0.75 1.08 16 4 C 0.04 1.16 7.25 24.47 0.18 1.34 16 5 C 0.60 18.75 7.84 86.89 0.68 19.43 16 6 O -0.53 -20.51 16.58 -3.72 -0.06 -20.57 16 7 N -0.68 -19.39 4.51 -439.45 -1.98 -21.37 16 8 C 0.13 4.53 2.54 46.18 0.12 4.65 16 9 H 0.09 3.26 7.53 -2.39 -0.02 3.24 16 10 C 0.19 9.02 4.80 86.73 0.42 9.44 16 11 N -0.62 -29.50 3.38 -691.03 -2.34 -31.83 16 12 C -0.23 -12.44 10.28 84.03 0.86 -11.58 16 13 H 0.09 4.39 7.83 -2.92 -0.02 4.36 16 14 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 15 N -0.95 -57.81 10.31 21.65 0.22 -57.59 16 16 Si 0.97 45.44 29.55 68.60 2.03 47.46 16 17 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 18 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 19 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 20 C 0.14 4.69 6.16 87.02 0.54 5.22 16 21 C -0.07 -1.99 0.84 -50.62 -0.04 -2.03 16 22 C -0.13 -2.25 8.23 71.99 0.59 -1.66 16 23 C -0.12 -3.34 8.58 71.98 0.62 -2.72 16 24 C -0.25 -6.80 10.94 22.84 0.25 -6.55 16 25 C 0.47 13.23 8.02 85.25 0.68 13.92 16 26 O -0.56 -19.26 17.92 -5.23 -0.09 -19.35 16 27 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.42 9.59 6.82 -92.70 -0.63 8.96 16 31 H 0.01 0.73 7.38 -2.39 -0.02 0.71 16 32 H 0.00 0.25 7.41 -2.39 -0.02 0.23 16 33 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.05 1.64 8.06 -2.39 -0.02 1.62 16 35 H 0.03 1.05 8.00 -2.39 -0.02 1.04 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 0.99 6.44 -2.39 -0.02 0.98 16 39 H 0.03 1.09 7.91 -2.39 -0.02 1.07 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.20 5.09 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -76.80 350.84 3.91 -72.89 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.41 Total: 11.74 kcal Atomic # 6 Polarization: 21.82 SS G_CDS: 6.79 Total: 28.61 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -5.91 Total: -121.86 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: 0.60 Total: -38.85 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -76.80 3.91 -72.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974502118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.777 kcal (2) G-P(sol) polarization free energy of solvation -76.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds