Wall clock time and date at job start Fri Apr 10 2020 17:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 O 1.20926 * 124.56516 * 2 1 4 4 C 1.34168 * 112.19063 * 180.19452 * 3 2 1 5 5 C 1.48199 * 126.38881 * 179.78001 * 4 3 2 6 6 O 1.21487 * 120.00508 * 179.68777 * 5 4 3 7 7 N 1.34780 * 119.99589 * 359.68865 * 5 4 3 8 8 C 1.46503 * 120.00018 * 180.02562 * 7 5 4 9 9 H 1.09004 * 110.64032 * 36.68597 * 8 7 5 10 10 C 1.54322 * 110.72115 * 273.54161 * 8 7 5 11 11 N 1.47014 * 107.27361 * 263.82930 * 10 8 7 12 12 C 1.36932 * 125.64753 * 181.03439 * 11 10 8 13 13 H 1.08008 * 120.00035 * 173.95671 * 12 11 10 14 14 C 1.38816 * 120.00432 * 353.95996 * 12 11 10 15 15 N 1.31620 * 119.99630 * 6.83687 * 14 12 11 16 16 Si 1.86798 * 120.00071 * 186.84234 * 14 12 11 17 17 H 1.48501 * 109.47283 * 94.98479 * 16 14 12 18 18 H 1.48503 * 109.46879 * 214.98026 * 16 14 12 19 19 H 1.48498 * 109.47381 * 334.98199 * 16 14 12 20 20 C 1.47430 * 108.70368 * 1.06038 * 11 10 8 21 21 C 1.54906 * 104.82878 * 335.87085 * 20 11 10 22 22 C 1.52998 * 111.00507 * 155.08539 * 21 20 11 23 23 C 1.53001 * 111.00485 * 278.93639 * 21 20 11 24 24 C 1.36325 * 107.22913 * 359.51476 * 4 3 2 25 25 C 1.34828 * 124.56758 * 179.66084 * 2 1 3 26 26 O 1.21973 * 127.14889 * 0.03080 * 25 2 1 27 27 H 1.09008 * 109.46899 * 270.33875 * 1 2 3 28 28 H 1.09003 * 109.47247 * 30.33712 * 1 2 3 29 29 H 1.08998 * 109.47413 * 150.34480 * 1 2 3 30 30 H 0.97001 * 120.00566 * 359.97438 * 7 5 4 31 31 H 1.09004 * 109.88177 * 144.40592 * 10 8 7 32 32 H 1.09003 * 110.00777 * 23.32335 * 10 8 7 33 33 H 0.97001 * 119.99594 * 180.02562 * 15 14 12 34 34 H 1.08994 * 110.36654 * 94.70784 * 20 11 10 35 35 H 1.08995 * 110.36203 * 217.03225 * 20 11 10 36 36 H 1.09004 * 109.46855 * 61.45174 * 22 21 20 37 37 H 1.08997 * 109.47483 * 181.45010 * 22 21 20 38 38 H 1.08999 * 109.47376 * 301.45351 * 22 21 20 39 39 H 1.08997 * 109.47190 * 58.54674 * 23 21 20 40 40 H 1.08999 * 109.47597 * 178.55022 * 23 21 20 41 41 H 1.09007 * 109.47175 * 298.55127 * 23 21 20 42 42 H 1.07991 * 127.99320 * 180.22935 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9958 0.0000 4 6 3.4616 0.7083 -0.0042 5 6 4.5760 1.6852 -0.0100 6 8 5.7264 1.2945 -0.0077 7 7 4.3133 3.0071 -0.0178 8 6 5.4149 3.9729 -0.0242 9 1 6.2428 3.6074 -0.6318 10 6 5.8849 4.2744 1.4145 11 7 5.2035 5.5029 1.8479 12 6 5.3640 6.1193 3.0600 13 1 4.8921 7.0725 3.2479 14 6 6.1332 5.5192 4.0475 15 7 6.8170 4.4277 3.7766 16 14 6.1978 6.2607 5.7608 17 1 5.1970 5.5896 6.6287 18 1 7.5553 6.0699 6.3319 19 1 5.8926 7.7119 5.6840 20 6 4.3182 5.9609 0.7615 21 6 4.9283 5.3573 -0.5281 22 6 3.8649 5.2018 -1.6170 23 6 6.1018 6.2026 -1.0274 24 6 3.5770 -0.6500 0.0039 25 6 2.2300 -1.1102 0.0066 26 8 1.8473 -2.2684 0.0129 27 1 -0.3633 0.0061 1.0277 28 1 -0.3634 0.8870 -0.5191 29 1 -0.3634 -0.8930 -0.5084 30 1 3.3948 3.3191 -0.0200 31 1 6.9644 4.4248 1.4279 32 1 5.6175 3.4494 2.0748 33 1 7.3542 4.0081 4.4667 34 1 3.3060 5.5864 0.9137 35 1 4.3167 7.0495 0.7070 36 1 3.4605 6.1813 -1.8725 37 1 4.3144 4.7522 -2.5024 38 1 3.0621 4.5612 -1.2521 39 1 6.8635 6.2619 -0.2500 40 1 6.5277 5.7424 -1.9190 41 1 5.7502 7.2057 -1.2688 42 1 4.4813 -1.2404 0.0069 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974502119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:38 Heat of formation + Delta-G solvation = 19.757849 kcal Electronic energy + Delta-G solvation = -26530.410669 eV Core-core repulsion = 22708.577459 eV Total energy + Delta-G solvation = -3821.833210 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.24049 -41.42208 -39.59592 -39.38089 -35.81001 -35.40571 -34.61114 -33.40714 -32.59773 -30.23369 -28.88959 -27.97763 -27.38718 -25.68038 -24.71122 -24.21141 -22.22295 -21.46627 -20.45980 -19.57897 -19.51166 -18.68585 -18.32387 -17.56229 -16.80409 -16.54645 -16.20796 -16.08918 -15.67657 -15.52454 -15.29020 -15.03350 -14.81414 -14.74420 -14.24092 -13.98847 -13.78410 -13.65024 -13.46317 -13.17322 -12.97734 -12.85562 -12.69680 -12.55280 -12.11249 -11.91568 -11.80483 -11.65303 -11.54336 -11.35948 -11.29324 -11.12409 -10.71714 -10.21092 -9.70014 -8.86162 -7.84297 -5.18523 -0.63136 0.49776 1.36562 1.45824 1.46691 1.55849 1.57218 1.84811 2.22365 2.50119 3.34374 3.36946 3.48582 3.64528 3.74629 3.84174 3.95758 4.07245 4.27851 4.34209 4.39691 4.51088 4.62633 4.65999 4.68454 4.80867 4.83700 4.92198 4.97332 5.02512 5.13663 5.20375 5.25078 5.38802 5.48586 5.58610 5.64463 5.75141 6.14701 6.19807 6.42830 6.78298 6.82727 7.10495 7.79777 8.43389 9.25695 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.013880 B = 0.004247 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.740632 B = 6590.841769 C = 7489.075392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.443 5.443 3 O 0.015 5.985 4 C 0.044 3.956 5 C 0.602 3.398 6 O -0.530 6.530 7 N -0.677 5.677 8 C 0.134 3.866 9 H 0.094 0.906 10 C 0.188 3.812 11 N -0.621 5.621 12 C -0.235 4.235 13 H 0.086 0.914 14 C -0.065 4.065 15 N -0.951 5.951 16 Si 0.971 3.029 17 H -0.291 1.291 18 H -0.300 1.300 19 H -0.264 1.264 20 C 0.136 3.864 21 C -0.072 4.072 22 C -0.127 4.127 23 C -0.124 4.124 24 C -0.248 4.248 25 C 0.472 3.528 26 O -0.563 6.563 27 H 0.094 0.906 28 H 0.127 0.873 29 H 0.111 0.889 30 H 0.416 0.584 31 H 0.009 0.991 32 H 0.008 0.992 33 H 0.244 0.756 34 H 0.033 0.967 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.433 -0.960 -13.932 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.204 5.204 3 O 0.003 5.997 4 C -0.015 4.015 5 C 0.385 3.615 6 O -0.406 6.406 7 N -0.329 5.329 8 C 0.029 3.971 9 H 0.112 0.888 10 C 0.062 3.938 11 N -0.347 5.347 12 C -0.364 4.364 13 H 0.104 0.896 14 C -0.258 4.258 15 N -0.600 5.600 16 Si 0.800 3.200 17 H -0.219 1.219 18 H -0.227 1.227 19 H -0.188 1.188 20 C 0.011 3.989 21 C -0.074 4.074 22 C -0.185 4.185 23 C -0.182 4.182 24 C -0.273 4.273 25 C 0.271 3.729 26 O -0.447 6.447 27 H 0.113 0.887 28 H 0.145 0.855 29 H 0.130 0.870 30 H 0.255 0.745 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -13.080 -1.602 -13.744 19.041 hybrid contribution 0.373 0.055 1.639 1.682 sum -12.707 -1.547 -12.105 17.618 Atomic orbital electron populations 1.22631 0.67751 1.07534 1.06121 1.46380 1.07142 0.99055 1.67779 1.84026 1.14599 1.20845 1.80218 1.23098 0.81813 0.95734 1.00860 1.16771 0.85313 0.81888 0.77573 1.90889 1.19785 1.79034 1.50930 1.45835 1.11599 1.04011 1.71420 1.22319 0.88864 0.88719 0.97173 0.88811 1.21159 0.94183 0.88322 0.90180 1.44671 1.48730 1.27501 1.13798 1.19448 1.25828 1.02137 0.89018 0.89581 1.25609 1.00077 0.98327 1.01805 1.70200 1.34007 1.22955 1.32820 0.85159 0.76191 0.78315 0.80313 1.21850 1.22704 1.18817 1.21930 0.92727 0.97810 0.86393 1.22000 0.97711 0.92089 0.95598 1.21696 0.96859 1.03229 0.96687 1.21599 0.96428 0.99843 1.00286 1.23443 1.00011 0.93646 1.10222 1.18361 0.87086 0.85616 0.81843 1.90928 1.79654 1.17163 1.56975 0.88720 0.85501 0.87037 0.74485 0.97314 0.97413 0.94704 0.94963 0.93291 0.90257 0.91075 0.91888 0.95055 0.90943 0.90599 0.78704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 11.22 127.77 1.43 2.45 16 2 N -0.44 -9.31 3.68 -492.73 -1.82 -11.12 16 3 O 0.02 0.33 10.69 70.41 0.75 1.08 16 4 C 0.04 1.17 7.25 24.47 0.18 1.35 16 5 C 0.60 18.92 7.84 86.89 0.68 19.60 16 6 O -0.53 -20.69 16.62 -3.67 -0.06 -20.75 16 7 N -0.68 -19.50 4.54 -439.46 -2.00 -21.50 16 8 C 0.13 4.56 2.51 46.18 0.12 4.68 16 9 H 0.09 3.25 7.60 -2.38 -0.02 3.23 16 10 C 0.19 9.00 4.73 86.73 0.41 9.41 16 11 N -0.62 -29.61 3.38 -692.00 -2.34 -31.95 16 12 C -0.24 -12.63 10.26 84.04 0.86 -11.77 16 13 H 0.09 4.37 7.84 -2.91 -0.02 4.35 16 14 C -0.07 -3.67 5.48 84.86 0.47 -3.20 16 15 N -0.95 -57.84 10.36 21.65 0.22 -57.61 16 16 Si 0.97 45.52 29.56 68.60 2.03 47.54 16 17 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 18 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 20 C 0.14 4.71 6.14 86.85 0.53 5.24 16 21 C -0.07 -1.98 0.83 -50.79 -0.04 -2.03 16 22 C -0.13 -2.25 8.35 71.98 0.60 -1.65 16 23 C -0.12 -3.30 8.61 71.98 0.62 -2.68 16 24 C -0.25 -6.86 10.94 22.84 0.25 -6.61 16 25 C 0.47 13.30 8.02 85.25 0.68 13.98 16 26 O -0.56 -19.27 17.84 -5.23 -0.09 -19.36 16 27 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.11 1.13 8.03 -2.39 -0.02 1.11 16 30 H 0.42 9.61 6.63 -92.71 -0.61 9.00 16 31 H 0.01 0.49 7.55 -2.39 -0.02 0.47 16 32 H 0.01 0.43 7.27 -2.39 -0.02 0.42 16 33 H 0.24 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.03 1.04 8.04 -2.39 -0.02 1.02 16 35 H 0.05 1.65 8.05 -2.39 -0.02 1.63 16 36 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 0.98 6.16 -2.39 -0.01 0.96 16 39 H 0.03 1.07 7.81 -2.39 -0.02 1.05 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.20 5.14 8.06 -2.92 -0.02 5.12 16 Total: -1.00 -77.02 350.38 3.92 -73.10 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.43 Total: 11.80 kcal Atomic # 6 Polarization: 21.97 SS G_CDS: 6.79 Total: 28.76 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -5.93 Total: -122.18 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: 0.60 Total: -39.02 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -77.02 3.92 -73.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974502119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.857 kcal (2) G-P(sol) polarization free energy of solvation -77.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds