Wall clock time and date at job start Fri Apr 10 2020 17:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35352 * 116.99862 * 2 1 4 4 N 1.30552 * 125.44210 * 179.97438 * 3 2 1 5 5 C 1.36335 * 108.38127 * 180.02562 * 4 3 2 6 6 C 1.47367 * 126.41090 * 179.97438 * 5 4 3 7 7 O 1.21626 * 119.99617 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00083 * 0.02562 * 6 5 4 9 9 C 1.46506 * 119.99576 * 180.02562 * 8 6 5 10 10 H 1.08989 * 110.89064 * 34.30133 * 9 8 6 11 11 C 1.54907 * 111.00240 * 270.41761 * 9 8 6 12 12 N 1.47426 * 104.83479 * 278.94013 * 11 9 8 13 13 C 1.36940 * 125.65092 * 155.83877 * 12 11 9 14 14 H 1.08002 * 120.00018 * 180.02562 * 13 12 11 15 15 C 1.38813 * 119.99725 * 0.02562 * 13 12 11 16 16 N 1.31613 * 120.00318 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99584 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47509 * 60.00154 * 17 15 13 19 19 H 1.48504 * 109.46863 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47220 * 299.99651 * 17 15 13 21 21 C 1.47025 * 108.70212 * 335.87338 * 12 11 9 22 22 C 1.54430 * 107.27844 * 1.05911 * 21 12 11 23 23 C 1.52999 * 110.72577 * 263.84898 * 22 21 12 24 24 C 1.53005 * 110.76003 * 140.54443 * 22 21 12 25 25 C 1.35916 * 107.17273 * 359.97438 * 5 4 3 26 26 O 1.34196 * 125.44954 * 0.30851 * 3 2 1 27 27 H 1.09004 * 109.47266 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47645 * 300.00257 * 1 2 3 29 29 H 1.09009 * 109.46876 * 60.00361 * 1 2 3 30 30 H 0.96990 * 120.00224 * 0.02562 * 8 6 5 31 31 H 1.09001 * 110.37164 * 37.77584 * 11 9 8 32 32 H 1.08999 * 110.36848 * 160.09832 * 11 9 8 33 33 H 0.96993 * 120.00362 * 180.02562 * 16 15 13 34 34 H 1.08995 * 109.88679 * 120.47929 * 21 12 11 35 35 H 1.09004 * 109.87987 * 241.48797 * 21 12 11 36 36 H 1.08999 * 109.47111 * 173.47022 * 23 22 21 37 37 H 1.09009 * 109.47126 * 293.46950 * 23 22 21 38 38 H 1.08993 * 109.47248 * 53.46704 * 23 22 21 39 39 H 1.09000 * 109.47126 * 306.51629 * 24 22 21 40 40 H 1.09005 * 109.47018 * 66.51139 * 24 22 21 41 41 H 1.08990 * 109.47162 * 186.50987 * 24 22 21 42 42 H 1.08002 * 126.45227 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3977 0.0005 5 6 3.5701 2.7406 0.0009 6 6 4.8893 3.3975 0.0020 7 8 4.9640 4.6115 0.0027 8 7 6.0128 2.6531 0.0022 9 6 7.3242 3.3063 0.0039 10 1 7.2966 4.2320 0.5786 11 6 7.8176 3.5647 -1.4416 12 7 8.3803 2.2759 -1.8843 13 6 8.5089 1.8657 -3.1845 14 1 8.9355 0.8985 -3.4059 15 6 8.0910 2.6930 -4.2178 16 7 7.5706 3.8714 -3.9480 17 14 8.2658 2.1331 -5.9913 18 1 7.4887 0.8841 -6.1951 19 1 7.7491 3.1903 -6.8973 20 1 9.6978 1.8797 -6.2915 21 6 8.7797 1.5037 -0.6987 22 6 8.4210 2.3501 0.5422 23 6 9.6373 3.1407 1.0284 24 6 7.8664 1.4651 1.6604 25 6 2.3603 3.3600 0.0000 26 8 1.4227 2.3958 0.0059 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 5.9532 1.6851 0.0013 31 1 6.9838 3.8542 -2.0811 32 1 8.5871 4.3366 -1.4475 33 1 7.2782 4.4493 -4.6700 34 1 8.2376 0.5585 -0.6719 35 1 9.8529 1.3147 -0.7237 36 1 9.3354 3.8161 1.8288 37 1 10.3940 2.4503 1.4016 38 1 10.0493 3.7187 0.2013 39 1 7.0383 0.8698 1.2758 40 1 8.6524 0.8026 2.0231 41 1 7.5136 2.0924 2.4790 42 1 2.1850 4.4257 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974881267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:43 Heat of formation + Delta-G solvation = -10.465653 kcal Electronic energy + Delta-G solvation = -26451.494882 eV Core-core repulsion = 22628.351082 eV Total energy + Delta-G solvation = -3823.143799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.44422 -39.60040 -38.94610 -37.76232 -34.90314 -33.74593 -32.88862 -30.63655 -30.15219 -28.11634 -27.64471 -26.80962 -25.54514 -24.36657 -23.00625 -22.33453 -20.71540 -19.85993 -19.15456 -18.32491 -17.57562 -17.09968 -16.62756 -16.41692 -15.76558 -15.42746 -15.33254 -14.62956 -14.21434 -13.97768 -13.76511 -13.62667 -13.42404 -13.10806 -12.63541 -12.54771 -12.17327 -12.11223 -11.85111 -11.69054 -11.24567 -11.10680 -11.03511 -10.91649 -10.75988 -10.70488 -10.35767 -10.18153 -9.91274 -9.78693 -9.66595 -9.61702 -8.73563 -8.61532 -8.28003 -6.74061 -5.56479 -2.98847 1.17845 1.83014 2.12864 2.68351 3.45056 3.49011 3.50600 3.51891 3.70532 4.54810 4.57144 4.65137 4.68919 4.91083 5.00888 5.05261 5.24272 5.32297 5.38202 5.50409 5.59406 5.69139 5.81633 5.87425 5.96529 6.11266 6.16344 6.25573 6.36676 6.46397 6.52522 6.56278 6.67547 6.77159 6.82598 7.04533 7.45207 7.56837 7.68675 7.93741 8.09495 8.45576 8.66276 9.28881 9.90544 10.54816 11.46447 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.011385 B = 0.004791 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.868316 B = 5842.302210 C = 7079.248304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.245 6.245 3 C 0.374 3.626 4 N -0.450 5.450 5 C -0.034 4.034 6 C 0.600 3.400 7 O -0.539 6.539 8 N -0.679 5.679 9 C 0.122 3.878 10 H 0.089 0.911 11 C 0.147 3.853 12 N -0.601 5.601 13 C -0.223 4.223 14 H 0.076 0.924 15 C -0.009 4.009 16 N -0.919 5.919 17 Si 0.912 3.088 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C 0.143 3.857 22 C -0.087 4.087 23 C -0.128 4.128 24 C -0.132 4.132 25 C -0.006 4.006 26 O -0.228 6.228 27 H 0.117 0.883 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.407 0.593 31 H 0.113 0.887 32 H 0.022 0.978 33 H 0.252 0.748 34 H 0.023 0.977 35 H 0.024 0.976 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.037 -4.551 12.430 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.153 6.153 3 C 0.128 3.872 4 N -0.196 5.196 5 C -0.153 4.153 6 C 0.384 3.616 7 O -0.417 6.417 8 N -0.328 5.328 9 C 0.016 3.984 10 H 0.107 0.893 11 C 0.021 3.979 12 N -0.327 5.327 13 C -0.351 4.351 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.567 5.567 17 Si 0.743 3.257 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C 0.017 3.983 22 C -0.088 4.088 23 C -0.185 4.185 24 C -0.190 4.190 25 C -0.078 4.078 26 O -0.120 6.120 27 H 0.135 0.865 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.243 0.757 31 H 0.131 0.869 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -11.559 -4.351 12.203 17.362 hybrid contribution -0.712 -0.278 -1.083 1.325 sum -12.270 -4.629 11.120 17.194 Atomic orbital electron populations 1.23270 0.75404 1.05459 1.02904 1.86382 1.23423 1.16019 1.89452 1.23360 0.85702 0.79504 0.98630 1.71140 1.09566 1.15997 1.22852 1.21869 0.96253 0.88100 1.09107 1.16549 0.81836 0.86017 0.77185 1.90815 1.86584 1.12619 1.51682 1.45625 1.04973 1.10607 1.71579 1.22615 0.80193 0.94716 1.00843 0.89320 1.22312 0.99063 0.87279 0.89245 1.44442 1.72040 1.15653 1.00534 1.18992 1.34639 1.00631 0.80854 0.90619 1.24768 1.01357 0.96448 0.97905 1.69784 1.47187 1.09586 1.30130 0.86196 0.77622 0.77342 0.84573 1.21295 1.21658 1.21264 1.21436 0.97098 0.93623 0.86181 1.21859 0.95373 0.96157 0.95414 1.21682 0.96380 0.99545 1.00914 1.21728 1.00520 0.99108 0.97624 1.24933 0.84941 0.93669 1.04215 1.84353 1.39613 1.15859 1.72132 0.86460 0.91546 0.91451 0.75701 0.86935 0.96007 0.93715 0.95954 0.95812 0.93059 0.92692 0.91727 0.92634 0.92717 0.92869 0.74794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.73 101.05 1.08 1.24 16 2 O -0.24 -2.85 10.55 -40.98 -0.43 -3.28 16 3 C 0.37 5.25 8.98 52.22 0.47 5.72 16 4 N -0.45 -7.55 11.10 -11.71 -0.13 -7.68 16 5 C -0.03 -0.57 6.99 -82.98 -0.58 -1.15 16 6 C 0.60 11.68 7.81 -12.55 -0.10 11.58 16 7 O -0.54 -11.58 16.58 5.25 0.09 -11.50 16 8 N -0.68 -13.13 4.62 -52.82 -0.24 -13.38 16 9 C 0.12 2.43 2.61 -65.78 -0.17 2.26 16 10 H 0.09 1.76 7.53 -51.93 -0.39 1.36 16 11 C 0.15 3.67 5.27 -2.53 -0.01 3.66 16 12 N -0.60 -15.44 3.39 -170.00 -0.58 -16.01 16 13 C -0.22 -6.30 10.27 -15.06 -0.15 -6.46 16 14 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 15 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 16 N -0.92 -27.61 10.09 55.49 0.56 -27.05 16 17 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 C 0.14 2.97 6.41 -3.01 -0.02 2.95 16 22 C -0.09 -1.50 0.81 -152.62 -0.12 -1.63 16 23 C -0.13 -1.97 8.41 37.16 0.31 -1.66 16 24 C -0.13 -1.89 8.08 37.16 0.30 -1.59 16 25 C -0.01 -0.08 11.93 29.90 0.36 0.28 16 26 O -0.23 -2.84 10.20 -17.74 -0.18 -3.02 16 27 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.41 7.68 6.75 -40.82 -0.28 7.40 16 31 H 0.11 3.28 5.87 -51.93 -0.30 2.98 16 32 H 0.02 0.58 7.80 -51.93 -0.41 0.18 16 33 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.02 0.47 7.77 -51.93 -0.40 0.06 16 35 H 0.02 0.50 7.85 -51.93 -0.41 0.09 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.06 1.12 7.57 -51.93 -0.39 0.73 16 39 H 0.05 0.81 6.42 -51.93 -0.33 0.48 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.24 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -34.02 349.96 -5.24 -39.27 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.84 Total: 4.90 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 1.27 Total: 14.84 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -0.39 Total: -64.13 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.53 Total: -17.80 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.02 -5.24 -39.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974881267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.801 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds