Wall clock time and date at job start Fri Apr 10 2020 17:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35352 * 116.99862 * 2 1 4 4 N 1.30552 * 125.44210 * 179.97438 * 3 2 1 5 5 C 1.36335 * 108.38127 * 180.02562 * 4 3 2 6 6 C 1.47367 * 126.41090 * 179.97438 * 5 4 3 7 7 O 1.21626 * 119.99617 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00083 * 0.02562 * 6 5 4 9 9 C 1.46506 * 119.99576 * 180.02562 * 8 6 5 10 10 H 1.08989 * 110.89064 * 34.30133 * 9 8 6 11 11 C 1.54907 * 111.00240 * 270.41761 * 9 8 6 12 12 N 1.47426 * 104.83479 * 278.94013 * 11 9 8 13 13 C 1.36940 * 125.65092 * 155.83877 * 12 11 9 14 14 H 1.08002 * 120.00018 * 180.02562 * 13 12 11 15 15 C 1.38813 * 119.99725 * 0.02562 * 13 12 11 16 16 N 1.31613 * 120.00318 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99584 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47509 * 60.00154 * 17 15 13 19 19 H 1.48504 * 109.46863 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47220 * 299.99651 * 17 15 13 21 21 C 1.47025 * 108.70212 * 335.87338 * 12 11 9 22 22 C 1.54430 * 107.27844 * 1.05911 * 21 12 11 23 23 C 1.52999 * 110.72577 * 263.84898 * 22 21 12 24 24 C 1.53005 * 110.76003 * 140.54443 * 22 21 12 25 25 C 1.35916 * 107.17273 * 359.97438 * 5 4 3 26 26 O 1.34196 * 125.44954 * 0.30851 * 3 2 1 27 27 H 1.09004 * 109.47266 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47645 * 300.00257 * 1 2 3 29 29 H 1.09009 * 109.46876 * 60.00361 * 1 2 3 30 30 H 0.96990 * 120.00224 * 0.02562 * 8 6 5 31 31 H 1.09001 * 110.37164 * 37.77584 * 11 9 8 32 32 H 1.08999 * 110.36848 * 160.09832 * 11 9 8 33 33 H 0.96993 * 120.00362 * 180.02562 * 16 15 13 34 34 H 1.08995 * 109.88679 * 120.47929 * 21 12 11 35 35 H 1.09004 * 109.87987 * 241.48797 * 21 12 11 36 36 H 1.08999 * 109.47111 * 173.47022 * 23 22 21 37 37 H 1.09009 * 109.47126 * 293.46950 * 23 22 21 38 38 H 1.08993 * 109.47248 * 53.46704 * 23 22 21 39 39 H 1.09000 * 109.47126 * 306.51629 * 24 22 21 40 40 H 1.09005 * 109.47018 * 66.51139 * 24 22 21 41 41 H 1.08990 * 109.47162 * 186.50987 * 24 22 21 42 42 H 1.08002 * 126.45227 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3977 0.0005 5 6 3.5701 2.7406 0.0009 6 6 4.8893 3.3975 0.0020 7 8 4.9640 4.6115 0.0027 8 7 6.0128 2.6531 0.0022 9 6 7.3242 3.3063 0.0039 10 1 7.2966 4.2320 0.5786 11 6 7.8176 3.5647 -1.4416 12 7 8.3803 2.2759 -1.8843 13 6 8.5089 1.8657 -3.1845 14 1 8.9355 0.8985 -3.4059 15 6 8.0910 2.6930 -4.2178 16 7 7.5706 3.8714 -3.9480 17 14 8.2658 2.1331 -5.9913 18 1 7.4887 0.8841 -6.1951 19 1 7.7491 3.1903 -6.8973 20 1 9.6978 1.8797 -6.2915 21 6 8.7797 1.5037 -0.6987 22 6 8.4210 2.3501 0.5422 23 6 9.6373 3.1407 1.0284 24 6 7.8664 1.4651 1.6604 25 6 2.3603 3.3600 0.0000 26 8 1.4227 2.3958 0.0059 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 5.9532 1.6851 0.0013 31 1 6.9838 3.8542 -2.0811 32 1 8.5871 4.3366 -1.4475 33 1 7.2782 4.4493 -4.6700 34 1 8.2376 0.5585 -0.6719 35 1 9.8529 1.3147 -0.7237 36 1 9.3354 3.8161 1.8288 37 1 10.3940 2.4503 1.4016 38 1 10.0493 3.7187 0.2013 39 1 7.0383 0.8698 1.2758 40 1 8.6524 0.8026 2.0231 41 1 7.5136 2.0924 2.4790 42 1 2.1850 4.4257 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974881267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:42 Heat of formation + Delta-G solvation = -38.241615 kcal Electronic energy + Delta-G solvation = -26452.699338 eV Core-core repulsion = 22628.351082 eV Total energy + Delta-G solvation = -3824.348255 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.53731 -41.15398 -39.84722 -39.31814 -36.07829 -35.65030 -34.43015 -32.59653 -31.26845 -29.81741 -28.29792 -28.07275 -27.42407 -25.84893 -24.54035 -23.45046 -22.28707 -21.47188 -20.49845 -19.65276 -18.70362 -18.58173 -18.32767 -17.49441 -17.30674 -16.62960 -16.34431 -16.17735 -15.76388 -15.63274 -15.33222 -15.17441 -14.65348 -14.51393 -14.14393 -13.73005 -13.65224 -13.09731 -13.03308 -12.99947 -12.96299 -12.83067 -12.61221 -12.55854 -12.16776 -12.06325 -11.90531 -11.79726 -11.76445 -11.46544 -11.36239 -11.24259 -10.74653 -10.04368 -9.73448 -8.83152 -7.74283 -5.19033 0.03600 0.85643 0.93800 1.43817 1.47438 1.53651 1.71705 2.12733 2.29814 2.49663 3.34206 3.40170 3.57595 3.70734 3.76230 3.98102 4.08770 4.12674 4.21721 4.25516 4.41018 4.42947 4.52901 4.64092 4.65048 4.77170 4.85843 4.88308 4.93278 5.04603 5.12614 5.21452 5.29357 5.33836 5.48180 5.54439 5.59956 5.67287 5.84039 6.32336 6.34559 6.62279 7.10961 7.15223 7.80450 8.44284 9.26287 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.011385 B = 0.004791 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.868316 B = 5842.302210 C = 7079.248304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.255 6.255 3 C 0.382 3.618 4 N -0.485 5.485 5 C -0.074 4.074 6 C 0.597 3.403 7 O -0.568 6.568 8 N -0.679 5.679 9 C 0.133 3.867 10 H 0.091 0.909 11 C 0.155 3.845 12 N -0.619 5.619 13 C -0.236 4.236 14 H 0.082 0.918 15 C -0.067 4.067 16 N -0.948 5.948 17 Si 0.977 3.023 18 H -0.279 1.279 19 H -0.296 1.296 20 H -0.276 1.276 21 C 0.138 3.862 22 C -0.073 4.073 23 C -0.124 4.124 24 C -0.124 4.124 25 C 0.028 3.972 26 O -0.213 6.213 27 H 0.147 0.853 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.409 0.591 31 H 0.069 0.931 32 H -0.007 1.007 33 H 0.244 0.756 34 H 0.027 0.973 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.133 -6.053 13.839 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.164 6.164 3 C 0.135 3.865 4 N -0.232 5.232 5 C -0.192 4.192 6 C 0.383 3.617 7 O -0.449 6.449 8 N -0.327 5.327 9 C 0.027 3.973 10 H 0.109 0.891 11 C 0.029 3.971 12 N -0.344 5.344 13 C -0.365 4.365 14 H 0.099 0.901 15 C -0.259 4.259 16 N -0.598 5.598 17 Si 0.806 3.194 18 H -0.205 1.205 19 H -0.222 1.222 20 H -0.202 1.202 21 C 0.013 3.987 22 C -0.075 4.075 23 C -0.182 4.182 24 C -0.182 4.182 25 C -0.045 4.045 26 O -0.103 6.103 27 H 0.165 0.835 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.246 0.754 31 H 0.087 0.913 32 H 0.011 0.989 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -12.656 -5.906 13.643 19.524 hybrid contribution -0.472 0.132 -1.516 1.594 sum -13.127 -5.774 12.127 18.781 Atomic orbital electron populations 1.23720 0.72567 1.07803 1.03926 1.86422 1.26226 1.14675 1.89040 1.23420 0.85439 0.80413 0.97233 1.71004 1.11388 1.16113 1.24653 1.21542 0.95893 0.88808 1.12947 1.16928 0.82821 0.85810 0.76103 1.90782 1.87258 1.13771 1.53045 1.45588 1.04806 1.10648 1.71665 1.22347 0.81475 0.95998 0.97486 0.89117 1.21963 0.96660 0.86692 0.91812 1.44675 1.72254 1.16297 1.01218 1.19405 1.33909 1.00786 0.82389 0.90059 1.25605 1.01709 0.96685 1.01922 1.70089 1.48425 1.10675 1.30569 0.85171 0.77919 0.76737 0.79619 1.20524 1.22233 1.20175 1.21653 0.97189 0.93849 0.86007 1.21853 0.95063 0.95539 0.94999 1.21678 0.95966 0.99974 1.00555 1.21679 1.00986 0.98963 0.96537 1.25515 0.83850 0.94752 1.00371 1.84402 1.38858 1.15405 1.71668 0.83516 0.90130 0.90804 0.75443 0.91290 0.98889 0.94672 0.95541 0.95334 0.90900 0.90162 0.94441 0.93192 0.90247 0.91364 0.71707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 10.73 113.37 1.22 1.35 16 2 O -0.26 -5.49 10.55 -64.21 -0.68 -6.17 16 3 C 0.38 10.20 8.98 130.43 1.17 11.37 16 4 N -0.49 -16.13 11.10 -419.39 -4.65 -20.78 16 5 C -0.07 -2.48 6.99 40.31 0.28 -2.19 16 6 C 0.60 23.69 7.81 86.65 0.68 24.37 16 7 O -0.57 -25.02 16.58 -4.11 -0.07 -25.09 16 8 N -0.68 -26.69 4.62 -439.26 -2.03 -28.72 16 9 C 0.13 5.40 2.61 46.38 0.12 5.52 16 10 H 0.09 3.65 7.53 -2.39 -0.02 3.63 16 11 C 0.15 8.14 5.27 86.85 0.46 8.60 16 12 N -0.62 -32.65 3.39 -691.77 -2.35 -35.00 16 13 C -0.24 -13.63 10.27 84.03 0.86 -12.77 16 14 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 15 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 16 N -0.95 -59.53 10.09 21.65 0.22 -59.31 16 17 Si 0.98 47.55 29.55 68.60 2.03 49.57 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 C 0.14 5.70 6.41 86.77 0.56 6.26 16 22 C -0.07 -2.46 0.81 -50.96 -0.04 -2.50 16 23 C -0.12 -3.63 8.41 71.98 0.61 -3.02 16 24 C -0.12 -3.23 8.08 71.98 0.58 -2.64 16 25 C 0.03 0.69 11.93 67.28 0.80 1.50 16 26 O -0.21 -4.85 10.20 18.95 0.19 -4.65 16 27 H 0.15 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.41 15.61 6.75 -92.72 -0.63 14.98 16 31 H 0.07 4.27 5.87 -2.39 -0.01 4.25 16 32 H -0.01 -0.38 7.80 -2.39 -0.02 -0.40 16 33 H 0.24 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.03 1.08 7.77 -2.39 -0.02 1.06 16 35 H 0.03 1.16 7.85 -2.38 -0.02 1.14 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 37 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.04 1.29 7.57 -2.39 -0.02 1.27 16 39 H 0.05 1.37 6.42 -2.39 -0.02 1.35 16 40 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.27 4.70 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -77.57 349.96 0.84 -76.73 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.42 Total: 21.07 kcal Atomic # 6 Polarization: 24.59 SS G_CDS: 7.76 Total: 32.35 kcal Atomic # 7 Polarization: -135.00 SS G_CDS: -8.81 Total: -143.81 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.55 Total: -35.91 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.57 kcal Total: -77.57 0.84 -76.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974881267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.488 kcal (2) G-P(sol) polarization free energy of solvation -77.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds