Wall clock time and date at job start Fri Apr 10 2020 17:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00271 * 2 1 4 4 H 1.48501 * 109.47200 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47014 * 119.99932 * 3 2 1 6 6 H 1.48498 * 109.47176 * 239.99849 * 3 2 1 7 7 C 1.38814 * 119.99617 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99978 * 206.50429 * 7 2 1 9 9 N 1.36933 * 119.99841 * 26.50044 * 7 2 1 10 10 C 1.43466 * 118.93787 * 207.13668 * 9 7 2 11 11 C 1.53797 * 107.96038 * 273.61501 * 10 9 7 12 12 C 1.47137 * 111.83801 * 281.66477 * 11 10 9 13 13 N 1.48204 * 110.34505 * 58.30134 * 12 11 10 14 14 C 1.34776 * 119.97329 * 102.46263 * 13 12 11 15 15 O 1.21286 * 119.99712 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99892 * 179.97438 * 14 13 12 17 17 C 1.53009 * 109.46817 * 180.02562 * 16 14 13 18 18 H 1.09003 * 110.53771 * 307.85267 * 17 16 14 19 19 C 1.54221 * 110.60498 * 185.00668 * 17 16 14 20 20 C 1.51322 * 103.55264 * 241.48578 * 19 17 16 21 21 O 1.21223 * 125.39634 * 180.02562 * 20 19 17 22 22 N 1.33873 * 109.20644 * 359.97438 * 20 19 17 23 23 C 1.33886 * 114.47558 * 0.02562 * 22 20 19 24 24 O 1.21222 * 125.39264 * 180.02562 * 23 22 20 25 25 C 1.43623 * 120.05818 * 282.49189 * 13 12 11 26 26 C 1.48852 * 118.94204 * 26.87524 * 9 7 2 27 27 H 0.97001 * 120.00761 * 185.78524 * 1 2 3 28 28 H 1.09005 * 109.76453 * 33.23176 * 10 9 7 29 29 H 1.09003 * 109.76180 * 153.99876 * 10 9 7 30 30 H 1.08994 * 109.00500 * 42.27591 * 11 10 9 31 31 H 1.08998 * 109.00643 * 161.05819 * 11 10 9 32 32 H 1.09003 * 109.32180 * 178.56680 * 12 11 10 33 33 H 1.09005 * 109.32658 * 298.20169 * 12 11 10 34 34 H 1.08991 * 109.47626 * 300.00187 * 16 14 13 35 35 H 1.08999 * 109.46823 * 60.00821 * 16 14 13 36 36 H 1.09001 * 110.60561 * 359.97438 * 19 17 16 37 37 H 1.08995 * 110.60910 * 122.96929 * 19 17 16 38 38 H 0.97001 * 122.76713 * 179.97438 * 22 20 19 39 39 H 1.09005 * 108.87525 * 211.44590 * 25 13 12 40 40 H 1.08998 * 108.87347 * 329.97439 * 25 13 12 41 41 H 1.09005 * 109.47887 * 260.61993 * 26 9 7 42 42 H 1.08998 * 109.48050 * 20.65018 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0050 -1.2516 0.4168 9 7 1.4333 -2.3255 -0.5302 10 6 1.8363 -3.6111 -0.0373 11 6 3.0768 -4.0556 -0.8303 12 6 2.7196 -4.5728 -2.1606 13 7 1.9909 -3.5412 -2.9360 14 6 2.6293 -2.8459 -3.8980 15 8 3.7996 -3.0649 -4.1291 16 6 1.8887 -1.7971 -4.6871 17 6 2.8363 -1.1629 -5.7074 18 1 3.7479 -0.8176 -5.2197 19 6 2.1410 -0.0001 -6.4443 20 6 2.1440 -0.4446 -7.8907 21 8 1.6870 0.1857 -8.8199 22 7 2.7322 -1.6438 -7.9818 23 6 3.1594 -2.1421 -6.8148 24 8 3.7173 -3.2083 -6.6689 25 6 0.6051 -3.2813 -2.6627 26 6 0.4041 -2.1731 -1.5947 27 1 -0.4851 -0.8357 0.0847 28 1 2.0825 -3.5391 1.0222 29 1 1.0299 -4.3303 -0.1809 30 1 3.7464 -3.2037 -0.9486 31 1 3.5936 -4.8367 -0.2727 32 1 3.6278 -4.8512 -2.6952 33 1 2.0842 -5.4513 -2.0475 34 1 1.0505 -2.2592 -5.2085 35 1 1.5163 -1.0285 -4.0099 36 1 1.1200 0.1263 -6.0843 37 1 2.7082 0.9230 -6.3255 38 1 2.8393 -2.1134 -8.8237 39 1 0.1150 -2.9739 -3.5866 40 1 0.1381 -4.1989 -2.3050 41 1 -0.5894 -2.2632 -1.1553 42 1 0.5073 -1.1941 -2.0626 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989806670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:56 Heat of formation + Delta-G solvation = -71.571900 kcal Electronic energy + Delta-G solvation = -27162.283303 eV Core-core repulsion = 23336.489738 eV Total energy + Delta-G solvation = -3825.793565 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.94877 -39.79402 -38.62532 -37.12762 -35.95722 -34.46441 -33.78026 -32.75669 -30.84687 -28.89259 -27.54315 -25.65074 -24.87766 -23.74711 -22.32508 -21.76488 -20.67316 -19.80932 -18.55613 -18.01256 -17.49841 -16.92386 -16.52879 -16.29915 -15.84276 -15.40633 -14.95718 -14.34986 -14.30142 -14.13139 -14.04623 -13.69991 -13.47349 -13.37008 -12.83793 -12.70785 -12.65843 -12.36900 -12.22527 -11.85255 -11.43184 -11.23265 -11.12637 -10.76589 -10.74943 -10.43716 -10.38065 -10.33422 -10.29012 -10.06303 -10.01414 -9.43535 -9.33387 -8.37971 -8.13642 -6.94232 -6.12026 -3.29510 1.38880 2.59922 2.63845 3.04812 3.38935 3.44998 3.47287 3.65579 3.96437 4.10149 4.22268 4.54371 4.58030 4.91315 5.02020 5.12142 5.22285 5.32151 5.41205 5.48497 5.51381 5.65224 5.69906 5.73288 5.84052 5.84489 5.90812 5.95364 6.14480 6.33520 6.43484 6.48570 6.62696 6.73496 6.86163 6.91912 7.15178 7.16681 7.75653 7.86798 8.01316 8.51310 8.61994 9.09697 9.78687 10.18145 11.13777 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.013405 B = 0.005351 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.254008 B = 5231.195552 C = 6511.598220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.020 4.020 3 Si 1.054 2.946 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.350 4.350 8 H 0.053 0.947 9 N -0.594 5.594 10 C 0.164 3.836 11 C -0.167 4.167 12 C 0.131 3.869 13 N -0.586 5.586 14 C 0.516 3.484 15 O -0.531 6.531 16 C -0.128 4.128 17 C -0.108 4.108 18 H 0.134 0.866 19 C -0.157 4.157 20 C 0.532 3.468 21 O -0.492 6.492 22 N -0.685 5.685 23 C 0.527 3.473 24 O -0.448 6.448 25 C 0.087 3.913 26 C 0.137 3.863 27 H 0.268 0.732 28 H 0.046 0.954 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.412 0.588 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.931 -4.523 -10.842 11.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.222 4.222 3 Si 0.884 3.116 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.480 4.480 8 H 0.071 0.929 9 N -0.316 5.316 10 C 0.036 3.964 11 C -0.209 4.209 12 C 0.010 3.990 13 N -0.318 5.318 14 C 0.304 3.696 15 O -0.407 6.407 16 C -0.168 4.168 17 C -0.130 4.130 18 H 0.152 0.848 19 C -0.197 4.197 20 C 0.321 3.679 21 O -0.364 6.364 22 N -0.352 5.352 23 C 0.313 3.687 24 O -0.316 6.316 25 C -0.039 4.039 26 C 0.011 3.989 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.250 0.750 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.420 -3.177 -11.260 11.785 hybrid contribution 0.196 -1.855 -0.147 1.871 sum 1.616 -5.032 -11.407 12.572 Atomic orbital electron populations 1.70828 1.06564 1.30107 1.47983 1.25710 0.96373 1.01223 0.98868 0.83673 0.74988 0.76484 0.76424 1.21100 1.22024 1.22030 1.19920 0.98589 0.89269 1.40204 0.92873 1.43673 1.46808 1.01801 1.39349 1.20290 0.92980 0.87390 0.95737 1.21821 1.01853 1.01028 0.96149 1.20532 0.96916 0.89002 0.92558 1.47280 1.11364 1.38109 1.35089 1.20178 0.87378 0.81774 0.80300 1.90715 1.15875 1.66449 1.67671 1.21667 0.98032 0.99458 0.97663 1.21845 1.02337 0.93761 0.95042 0.84784 1.22640 1.05724 1.00435 0.90859 1.20829 0.74941 0.79906 0.92259 1.90802 1.43967 1.57209 1.44429 1.44890 1.55727 1.21739 1.12832 1.20774 0.76842 0.86952 0.84150 1.90865 1.36125 1.20833 1.83739 1.22019 0.81692 1.00588 0.99597 1.22181 0.92071 0.96623 0.88028 0.92118 0.93533 0.95131 0.91198 0.92692 0.90285 0.92331 0.88928 0.86238 0.85558 0.85601 0.74951 0.91497 0.91800 0.94710 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.25 12.63 55.49 0.70 -24.55 16 2 C -0.02 -0.51 4.60 -17.43 -0.08 -0.59 16 3 Si 1.05 23.92 29.99 -169.99 -5.10 18.82 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.35 -9.12 9.12 -15.06 -0.14 -9.25 16 8 H 0.05 1.45 7.96 -52.49 -0.42 1.03 16 9 N -0.59 -13.37 2.38 -171.78 -0.41 -13.78 16 10 C 0.16 3.20 5.63 -5.23 -0.03 3.17 16 11 C -0.17 -2.96 5.64 -29.13 -0.16 -3.13 16 12 C 0.13 2.14 5.70 -5.92 -0.03 2.11 16 13 N -0.59 -9.83 2.46 -176.44 -0.43 -10.26 16 14 C 0.52 8.88 7.36 -10.98 -0.08 8.79 16 15 O -0.53 -10.71 13.40 -15.64 -0.21 -10.91 16 16 C -0.13 -1.65 3.56 -27.88 -0.10 -1.75 16 17 C -0.11 -1.24 2.68 -90.83 -0.24 -1.48 16 18 H 0.13 1.65 7.89 -51.93 -0.41 1.24 16 19 C -0.16 -1.35 6.67 -26.94 -0.18 -1.53 16 20 C 0.53 5.52 8.55 -11.08 -0.09 5.43 16 21 O -0.49 -6.56 18.02 5.61 0.10 -6.46 16 22 N -0.69 -6.86 5.48 -11.39 -0.06 -6.92 16 23 C 0.53 6.69 7.72 -11.08 -0.09 6.60 16 24 O -0.45 -7.54 15.90 -15.58 -0.25 -7.78 16 25 C 0.09 1.34 5.06 -4.40 -0.02 1.32 16 26 C 0.14 2.73 5.09 -1.57 -0.01 2.72 16 27 H 0.27 7.40 6.37 -40.82 -0.26 7.14 16 28 H 0.05 0.95 8.02 -51.93 -0.42 0.54 16 29 H 0.03 0.54 7.58 -51.93 -0.39 0.15 16 30 H 0.07 1.48 7.91 -51.93 -0.41 1.07 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.36 7.12 -51.93 -0.37 0.99 16 33 H 0.06 0.82 8.05 -51.93 -0.42 0.41 16 34 H 0.09 0.98 7.35 -51.93 -0.38 0.60 16 35 H 0.12 1.56 7.35 -51.93 -0.38 1.18 16 36 H 0.13 0.92 7.74 -51.93 -0.40 0.52 16 37 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.41 3.44 8.96 -40.82 -0.37 3.07 16 39 H 0.07 0.85 6.38 -51.93 -0.33 0.52 16 40 H 0.06 0.91 7.72 -51.93 -0.40 0.51 16 41 H 0.04 0.73 7.11 -51.93 -0.37 0.36 16 42 H 0.07 1.50 6.22 -51.93 -0.32 1.18 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -33.76 334.98 -7.56 -41.33 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.69 Total: 3.07 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -1.26 Total: 12.41 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.20 Total: -55.51 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.36 Total: -25.16 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.10 Total: 18.82 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.76 -7.56 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989806670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.246 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds