Wall clock time and date at job start Fri Apr 10 2020 17:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00271 * 2 1 4 4 H 1.48501 * 109.47200 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47014 * 119.99932 * 3 2 1 6 6 H 1.48498 * 109.47176 * 239.99849 * 3 2 1 7 7 C 1.38814 * 119.99617 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99978 * 206.50429 * 7 2 1 9 9 N 1.36933 * 119.99841 * 26.50044 * 7 2 1 10 10 C 1.43466 * 118.93787 * 207.13668 * 9 7 2 11 11 C 1.53797 * 107.96038 * 273.61501 * 10 9 7 12 12 C 1.47137 * 111.83801 * 281.66477 * 11 10 9 13 13 N 1.48204 * 110.34505 * 58.30134 * 12 11 10 14 14 C 1.34776 * 119.97329 * 102.46263 * 13 12 11 15 15 O 1.21286 * 119.99712 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99892 * 179.97438 * 14 13 12 17 17 C 1.53009 * 109.46817 * 180.02562 * 16 14 13 18 18 H 1.09003 * 110.53771 * 307.85267 * 17 16 14 19 19 C 1.54221 * 110.60498 * 185.00668 * 17 16 14 20 20 C 1.51322 * 103.55264 * 241.48578 * 19 17 16 21 21 O 1.21223 * 125.39634 * 180.02562 * 20 19 17 22 22 N 1.33873 * 109.20644 * 359.97438 * 20 19 17 23 23 C 1.33886 * 114.47558 * 0.02562 * 22 20 19 24 24 O 1.21222 * 125.39264 * 180.02562 * 23 22 20 25 25 C 1.43623 * 120.05818 * 282.49189 * 13 12 11 26 26 C 1.48852 * 118.94204 * 26.87524 * 9 7 2 27 27 H 0.97001 * 120.00761 * 185.78524 * 1 2 3 28 28 H 1.09005 * 109.76453 * 33.23176 * 10 9 7 29 29 H 1.09003 * 109.76180 * 153.99876 * 10 9 7 30 30 H 1.08994 * 109.00500 * 42.27591 * 11 10 9 31 31 H 1.08998 * 109.00643 * 161.05819 * 11 10 9 32 32 H 1.09003 * 109.32180 * 178.56680 * 12 11 10 33 33 H 1.09005 * 109.32658 * 298.20169 * 12 11 10 34 34 H 1.08991 * 109.47626 * 300.00187 * 16 14 13 35 35 H 1.08999 * 109.46823 * 60.00821 * 16 14 13 36 36 H 1.09001 * 110.60561 * 359.97438 * 19 17 16 37 37 H 1.08995 * 110.60910 * 122.96929 * 19 17 16 38 38 H 0.97001 * 122.76713 * 179.97438 * 22 20 19 39 39 H 1.09005 * 108.87525 * 211.44590 * 25 13 12 40 40 H 1.08998 * 108.87347 * 329.97439 * 25 13 12 41 41 H 1.09005 * 109.47887 * 260.61993 * 26 9 7 42 42 H 1.08998 * 109.48050 * 20.65018 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0050 -1.2516 0.4168 9 7 1.4333 -2.3255 -0.5302 10 6 1.8363 -3.6111 -0.0373 11 6 3.0768 -4.0556 -0.8303 12 6 2.7196 -4.5728 -2.1606 13 7 1.9909 -3.5412 -2.9360 14 6 2.6293 -2.8459 -3.8980 15 8 3.7996 -3.0649 -4.1291 16 6 1.8887 -1.7971 -4.6871 17 6 2.8363 -1.1629 -5.7074 18 1 3.7479 -0.8176 -5.2197 19 6 2.1410 -0.0001 -6.4443 20 6 2.1440 -0.4446 -7.8907 21 8 1.6870 0.1857 -8.8199 22 7 2.7322 -1.6438 -7.9818 23 6 3.1594 -2.1421 -6.8148 24 8 3.7173 -3.2083 -6.6689 25 6 0.6051 -3.2813 -2.6627 26 6 0.4041 -2.1731 -1.5947 27 1 -0.4851 -0.8357 0.0847 28 1 2.0825 -3.5391 1.0222 29 1 1.0299 -4.3303 -0.1809 30 1 3.7464 -3.2037 -0.9486 31 1 3.5936 -4.8367 -0.2727 32 1 3.6278 -4.8512 -2.6952 33 1 2.0842 -5.4513 -2.0475 34 1 1.0505 -2.2592 -5.2085 35 1 1.5163 -1.0285 -4.0099 36 1 1.1200 0.1263 -6.0843 37 1 2.7082 0.9230 -6.3255 38 1 2.8393 -2.1134 -8.8237 39 1 0.1150 -2.9739 -3.5866 40 1 0.1381 -4.1989 -2.3050 41 1 -0.5894 -2.2632 -1.1553 42 1 0.5073 -1.1941 -2.0626 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989806670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:56 Heat of formation + Delta-G solvation = -94.552312 kcal Electronic energy + Delta-G solvation = -27163.279809 eV Core-core repulsion = 23336.489738 eV Total energy + Delta-G solvation = -3826.790071 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.88886 -41.09723 -39.66935 -38.63482 -36.97898 -36.07431 -34.90051 -34.09620 -32.59636 -29.93990 -29.01850 -27.02983 -26.07437 -25.46243 -23.58821 -22.67154 -21.71242 -21.43635 -19.81379 -19.30037 -18.93694 -18.09110 -17.72619 -17.47295 -17.01413 -16.51917 -16.19178 -16.04906 -15.61991 -15.36309 -15.26500 -15.16453 -14.72180 -14.62109 -14.23466 -14.00929 -13.82941 -13.70838 -13.48891 -13.06302 -12.85432 -12.71234 -12.47568 -12.25118 -12.00047 -11.96224 -11.82424 -11.77073 -11.67034 -11.40961 -11.24812 -11.03943 -10.67316 -10.32895 -9.51554 -8.81736 -8.13407 -5.30366 0.45532 1.62532 1.64916 1.68824 1.75111 1.77661 1.86249 2.18042 2.69565 3.10705 3.20542 3.23372 3.31223 3.63185 3.67416 3.80723 4.08045 4.13998 4.21204 4.24294 4.42149 4.48639 4.52617 4.63035 4.67321 4.74971 4.80106 4.85618 4.89532 5.01199 5.05004 5.07346 5.19762 5.26516 5.44918 5.59453 5.76889 5.94553 6.26360 6.48601 6.59215 6.85901 7.20753 7.32650 7.89614 8.26306 9.07875 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.013405 B = 0.005351 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.254008 B = 5231.195552 C = 6511.598220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.059 4.059 3 Si 1.095 2.905 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.353 4.353 8 H 0.030 0.970 9 N -0.608 5.608 10 C 0.161 3.839 11 C -0.151 4.151 12 C 0.129 3.871 13 N -0.592 5.592 14 C 0.504 3.496 15 O -0.567 6.567 16 C -0.124 4.124 17 C -0.106 4.106 18 H 0.124 0.876 19 C -0.143 4.143 20 C 0.541 3.459 21 O -0.518 6.518 22 N -0.674 5.674 23 C 0.533 3.467 24 O -0.493 6.493 25 C 0.097 3.903 26 C 0.142 3.858 27 H 0.258 0.742 28 H 0.028 0.972 29 H 0.056 0.944 30 H 0.027 0.973 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.419 0.581 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.024 0.976 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.034 -4.596 -11.914 12.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.257 4.257 3 Si 0.922 3.078 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.483 4.483 8 H 0.048 0.952 9 N -0.332 5.332 10 C 0.034 3.966 11 C -0.192 4.192 12 C 0.008 3.992 13 N -0.323 5.323 14 C 0.293 3.707 15 O -0.446 6.446 16 C -0.163 4.163 17 C -0.128 4.128 18 H 0.142 0.858 19 C -0.182 4.182 20 C 0.331 3.669 21 O -0.392 6.392 22 N -0.340 5.340 23 C 0.321 3.679 24 O -0.364 6.364 25 C -0.029 4.029 26 C 0.016 3.984 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.259 0.741 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.042 0.958 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.511 -3.270 -12.349 12.785 hybrid contribution 0.510 -1.896 0.242 1.979 sum 1.021 -5.166 -12.108 13.203 Atomic orbital electron populations 1.70926 1.07071 1.29497 1.50125 1.26685 0.96483 1.03636 0.98886 0.83104 0.74164 0.73521 0.77037 1.21376 1.21704 1.20453 1.19974 0.97613 0.90888 1.39866 0.95178 1.43886 1.47096 1.01804 1.40397 1.20386 0.94365 0.86896 0.94930 1.21616 1.00164 1.00055 0.97318 1.20564 0.97406 0.90016 0.91232 1.47454 1.11916 1.38034 1.34893 1.20976 0.87270 0.82103 0.80397 1.90699 1.17607 1.67560 1.68729 1.21705 0.98639 0.98349 0.97642 1.21810 1.02092 0.94339 0.94561 0.85830 1.22693 1.07004 0.99841 0.88711 1.21022 0.73904 0.79345 0.92624 1.90807 1.45206 1.57779 1.45456 1.44762 1.54917 1.21691 1.12626 1.20910 0.75788 0.86288 0.84952 1.90851 1.38262 1.22820 1.84442 1.21948 0.81378 0.99854 0.99700 1.22126 0.90576 0.97422 0.88261 0.93184 0.95353 0.92586 0.95449 0.90296 0.91371 0.89079 0.85983 0.86055 0.83341 0.83453 0.74079 0.87972 0.89659 0.95815 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.71 12.63 21.65 0.27 -51.44 16 2 C -0.06 -3.11 4.60 84.86 0.39 -2.72 16 3 Si 1.10 48.25 29.99 68.60 2.06 50.31 16 4 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.35 -18.61 9.12 84.03 0.77 -17.84 16 8 H 0.03 1.70 7.96 -2.91 -0.02 1.67 16 9 N -0.61 -27.29 2.38 -697.40 -1.66 -28.95 16 10 C 0.16 6.17 5.63 87.21 0.49 6.66 16 11 C -0.15 -5.22 5.64 29.04 0.16 -5.06 16 12 C 0.13 4.00 5.70 84.23 0.48 4.48 16 13 N -0.59 -18.70 2.46 -830.51 -2.04 -20.74 16 14 C 0.50 16.70 7.36 87.66 0.65 17.34 16 15 O -0.57 -22.90 13.40 17.21 0.23 -22.67 16 16 C -0.12 -2.89 3.56 29.85 0.11 -2.79 16 17 C -0.11 -2.23 2.68 -10.93 -0.03 -2.26 16 18 H 0.12 2.92 7.89 -2.39 -0.02 2.91 16 19 C -0.14 -2.02 6.67 30.46 0.20 -1.82 16 20 C 0.54 9.90 8.55 88.00 0.75 10.65 16 21 O -0.52 -12.72 18.02 -2.85 -0.05 -12.77 16 22 N -0.67 -12.31 5.48 -427.79 -2.34 -14.65 16 23 C 0.53 12.87 7.72 87.99 0.68 13.55 16 24 O -0.49 -16.46 15.90 17.41 0.28 -16.18 16 25 C 0.10 2.69 5.06 87.67 0.44 3.14 16 26 C 0.14 5.47 5.09 86.68 0.44 5.91 16 27 H 0.26 14.38 6.37 -92.71 -0.59 13.79 16 28 H 0.03 1.16 8.02 -2.38 -0.02 1.15 16 29 H 0.06 1.86 7.58 -2.39 -0.02 1.84 16 30 H 0.03 1.17 7.91 -2.39 -0.02 1.15 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.07 2.29 7.12 -2.39 -0.02 2.27 16 33 H 0.09 2.24 8.05 -2.38 -0.02 2.23 16 34 H 0.12 2.11 7.35 -2.39 -0.02 2.09 16 35 H 0.12 2.88 7.35 -2.39 -0.02 2.86 16 36 H 0.15 1.54 7.74 -2.39 -0.02 1.52 16 37 H 0.15 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.42 6.41 8.96 -92.71 -0.83 5.58 16 39 H 0.10 2.17 6.38 -2.38 -0.02 2.15 16 40 H 0.09 2.07 7.72 -2.39 -0.02 2.05 16 41 H 0.02 0.97 7.11 -2.38 -0.02 0.96 16 42 H 0.05 2.02 6.22 -2.39 -0.01 2.01 16 Total: -1.00 -75.14 334.98 2.68 -72.46 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.41 Total: 15.40 kcal Atomic # 6 Polarization: 23.70 SS G_CDS: 5.53 Total: 29.24 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -5.77 Total: -115.78 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: 0.46 Total: -51.63 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.06 Total: 50.31 kcal Total: -75.14 2.68 -72.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989806670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.089 kcal (2) G-P(sol) polarization free energy of solvation -75.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds