Wall clock time and date at job start Fri Apr 10 2020 18:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99506 * 2 1 4 4 H 1.48496 * 109.47032 * 269.99547 * 3 2 1 5 5 H 1.48500 * 109.47284 * 29.99982 * 3 2 1 6 6 H 1.48509 * 109.46832 * 149.99664 * 3 2 1 7 7 C 1.38813 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99836 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00152 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99856 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.46110 * 204.99925 * 10 9 7 12 12 C 1.53190 * 109.31807 * 178.62949 * 11 10 9 13 13 N 1.46926 * 108.77429 * 54.63283 * 12 11 10 14 14 C 1.34773 * 120.63120 * 126.37039 * 13 12 11 15 15 O 1.21282 * 120.00201 * 184.37123 * 14 13 12 16 16 C 1.50702 * 120.00004 * 4.37422 * 14 13 12 17 17 C 1.53235 * 109.62424 * 201.92806 * 16 14 13 18 18 C 1.50588 * 109.21699 * 184.44345 * 17 16 14 19 19 O 1.21225 * 119.36113 * 209.12740 * 18 17 16 20 20 N 1.34272 * 121.18077 * 29.11280 * 18 17 16 21 21 C 1.34140 * 122.62852 * 359.44461 * 20 18 17 22 22 O 1.21220 * 119.36463 * 180.52706 * 21 20 18 23 23 C 1.50591 * 121.27677 * 0.55602 * 21 20 18 24 24 C 1.46928 * 118.74001 * 306.64802 * 13 12 11 25 25 C 1.52761 * 109.00778 * 53.30555 * 24 13 12 26 26 H 0.96993 * 120.00550 * 0.02562 * 1 2 3 27 27 H 0.97004 * 120.00316 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.46406 * 324.97228 * 10 9 7 29 29 H 1.09004 * 109.49796 * 58.67584 * 11 10 9 30 30 H 1.09003 * 109.49687 * 298.58324 * 11 10 9 31 31 H 1.09001 * 109.58649 * 294.84949 * 12 11 10 32 32 H 1.08993 * 109.71063 * 174.49328 * 12 11 10 33 33 H 1.09001 * 109.61813 * 322.30419 * 16 14 13 34 34 H 1.09004 * 109.52739 * 304.38759 * 17 16 14 35 35 H 1.09009 * 109.51961 * 64.50969 * 17 16 14 36 36 H 0.97001 * 118.67195 * 179.45799 * 20 18 17 37 37 H 1.08994 * 109.52147 * 210.99478 * 23 21 20 38 38 H 1.08999 * 109.57550 * 90.83548 * 23 21 20 39 39 H 1.08997 * 109.58707 * 173.14377 * 24 13 12 40 40 H 1.09000 * 109.58772 * 293.56573 * 24 13 12 41 41 H 1.09000 * 109.56509 * 185.55149 * 25 24 13 42 42 H 1.09007 * 109.35772 * 65.50518 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5477 1.4403 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.1807 -4.7522 -0.6093 12 6 1.9620 -6.0695 -0.6391 13 7 2.4413 -6.3658 0.7179 14 6 2.1725 -7.5526 1.2972 15 8 2.5046 -7.7558 2.4458 16 6 1.4591 -8.6272 0.5178 17 6 0.7988 -9.6135 1.4870 18 6 0.1823 -10.7415 0.7026 19 8 -0.7912 -11.3116 1.1464 20 7 0.6913 -11.1263 -0.4788 21 6 1.7587 -10.5332 -1.0341 22 8 2.1632 -10.9227 -2.1084 23 6 2.4647 -9.3935 -0.3483 24 6 3.2140 -5.3414 1.4336 25 6 2.4233 -4.0344 1.4379 26 1 -0.4850 0.8399 -0.0004 27 1 0.3556 -2.3882 0.0005 28 1 2.9686 -3.5504 -0.5893 29 1 0.9017 -4.4717 -1.6250 30 1 0.2815 -4.8762 -0.0057 31 1 2.8124 -5.9748 -1.3143 32 1 1.3120 -6.8749 -0.9809 33 1 0.6987 -8.1742 -0.1183 34 1 1.5497 -10.0119 2.1692 35 1 0.0242 -9.1004 2.0572 36 1 0.2701 -11.8624 -0.9495 37 1 2.8860 -8.7228 -1.0971 38 1 3.2639 -9.7847 0.2812 39 1 3.3877 -5.6652 2.4598 40 1 4.1686 -5.1860 0.9308 41 1 3.0288 -3.2429 1.8795 42 1 1.5124 -4.1651 2.0224 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997097622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:21 Heat of formation + Delta-G solvation = -123.686067 kcal Electronic energy + Delta-G solvation = -25863.616434 eV Core-core repulsion = 22035.563030 eV Total energy + Delta-G solvation = -3828.053405 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.68455 -41.14318 -39.96407 -38.82005 -36.58433 -36.14738 -34.93279 -33.73246 -32.02011 -31.02744 -29.90598 -27.05131 -26.00157 -24.28032 -24.14994 -23.85556 -21.63314 -20.38253 -20.05186 -19.06151 -18.86722 -18.58294 -18.09430 -17.24384 -16.68569 -16.59352 -16.38700 -15.79085 -15.54583 -15.48289 -15.42065 -15.34084 -15.01758 -14.88395 -14.54055 -14.12807 -13.82018 -13.45896 -13.31646 -13.05716 -12.83312 -12.64770 -12.47202 -12.31848 -12.17921 -12.08616 -11.91173 -11.88866 -11.65911 -11.40193 -11.39142 -11.32135 -10.87554 -10.71017 -9.65929 -8.98201 -7.92506 -5.20268 0.39341 1.48726 1.49593 1.49711 1.57850 1.63147 1.70552 2.00501 2.57791 2.89208 3.19083 3.39092 3.41367 3.51295 3.78207 3.84795 3.91177 4.03583 4.20475 4.22576 4.39145 4.42585 4.47477 4.52200 4.67087 4.70148 4.81533 4.89433 4.90364 4.92667 4.99100 5.02949 5.17497 5.36470 5.52217 5.57628 5.64017 5.74434 6.27542 6.30190 6.41402 6.74446 7.09493 7.36388 8.13998 8.34868 9.31008 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.026551 B = 0.002799 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.310358 B =10002.016583 C =10081.978645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.234 4.234 8 H 0.077 0.923 9 N -0.739 5.739 10 C 0.171 3.829 11 C -0.135 4.135 12 C 0.110 3.890 13 N -0.601 5.601 14 C 0.527 3.473 15 O -0.570 6.570 16 C -0.106 4.106 17 C -0.122 4.122 18 C 0.543 3.457 19 O -0.534 6.534 20 N -0.671 5.671 21 C 0.543 3.457 22 O -0.529 6.529 23 C -0.126 4.126 24 C 0.123 3.877 25 C -0.140 4.140 26 H 0.249 0.751 27 H 0.371 0.629 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.118 0.882 36 H 0.416 0.584 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.704 -21.934 -1.811 22.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.797 3.203 4 H -0.215 1.215 5 H -0.227 1.227 6 H -0.194 1.194 7 C -0.366 4.366 8 H 0.095 0.905 9 N -0.378 5.378 10 C 0.063 3.937 11 C -0.173 4.173 12 C -0.012 4.012 13 N -0.332 5.332 14 C 0.315 3.685 15 O -0.450 6.450 16 C -0.127 4.127 17 C -0.162 4.162 18 C 0.333 3.667 19 O -0.409 6.409 20 N -0.335 5.335 21 C 0.333 3.667 22 O -0.403 6.403 23 C -0.166 4.166 24 C -0.001 4.001 25 C -0.181 4.181 26 H 0.058 0.942 27 H 0.202 0.798 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.134 0.866 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.136 0.864 36 H 0.256 0.744 37 H 0.158 0.842 38 H 0.153 0.847 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.073 0.927 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.853 -22.220 -1.440 23.023 hybrid contribution -0.572 1.139 0.063 1.276 sum 5.281 -21.081 -1.377 21.775 Atomic orbital electron populations 1.69803 1.06584 1.25862 1.59945 1.25504 0.96275 1.00955 1.04203 0.85226 0.77761 0.79950 0.77372 1.21457 1.22739 1.19427 1.19616 0.91439 0.85229 1.40296 0.90479 1.42677 1.05436 1.01127 1.88537 1.20470 0.94736 0.85022 0.93519 1.22118 0.98637 0.94755 1.01833 1.22050 0.99947 0.97069 0.82149 1.48205 1.53431 1.14312 1.17288 1.20375 0.78753 0.82907 0.86421 1.90719 1.54618 1.80878 1.18772 1.21496 0.99132 0.94563 0.97548 1.21792 1.03367 0.93052 0.97958 1.21010 0.81975 0.83891 0.79840 1.90812 1.26400 1.55866 1.67814 1.44873 1.30601 1.36065 1.21993 1.20935 0.78353 0.83115 0.84291 1.90827 1.63511 1.64119 1.21844 1.21952 0.98450 0.95007 1.01150 1.21445 0.94176 0.86268 0.98164 1.22378 0.99478 0.96370 0.99860 0.94216 0.79764 0.93056 0.90185 0.92603 0.88425 0.86571 0.85135 0.85005 0.86379 0.74356 0.84191 0.84716 0.90153 0.89637 0.92715 0.94264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.08 13.06 21.65 0.28 -57.80 16 2 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 44.89 29.55 68.60 2.03 46.92 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.23 -12.29 9.93 84.03 0.83 -11.46 16 8 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 9 N -0.74 -34.55 5.12 -322.82 -1.65 -36.20 16 10 C 0.17 5.74 2.73 45.02 0.12 5.86 16 11 C -0.13 -3.31 5.55 30.67 0.17 -3.14 16 12 C 0.11 1.63 6.08 86.36 0.52 2.15 16 13 N -0.60 -11.12 2.98 -819.75 -2.44 -13.56 16 14 C 0.53 9.33 6.86 87.66 0.60 9.93 16 15 O -0.57 -14.30 15.39 -3.03 -0.05 -14.35 16 16 C -0.11 -1.07 1.81 -11.38 -0.02 -1.09 16 17 C -0.12 -1.43 4.94 29.89 0.15 -1.28 16 18 C 0.54 7.66 7.75 87.70 0.68 8.34 16 19 O -0.53 -11.81 17.88 -2.86 -0.05 -11.86 16 20 N -0.67 -7.68 5.10 -428.47 -2.18 -9.87 16 21 C 0.54 6.35 7.74 87.72 0.68 7.03 16 22 O -0.53 -9.97 17.87 -2.84 -0.05 -10.03 16 23 C -0.13 -0.93 5.35 29.90 0.16 -0.77 16 24 C 0.12 2.85 6.41 86.22 0.55 3.40 16 25 C -0.14 -4.40 5.64 30.53 0.17 -4.23 16 26 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.37 18.98 7.80 -92.71 -0.72 18.26 16 28 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 29 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.12 0.95 5.43 -2.39 -0.01 0.93 16 33 H 0.13 0.89 6.22 -2.39 -0.01 0.87 16 34 H 0.13 1.47 7.74 -2.39 -0.02 1.46 16 35 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.42 4.44 8.79 -92.71 -0.81 3.62 16 37 H 0.14 0.67 7.90 -2.39 -0.02 0.65 16 38 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 2.03 7.00 -2.39 -0.02 2.01 16 40 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -74.49 344.79 0.51 -73.98 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -0.47 Total: 21.85 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.09 Total: 10.92 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -6.00 Total: -117.44 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.15 Total: -36.24 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -74.49 0.51 -73.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997097622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.703 kcal (2) G-P(sol) polarization free energy of solvation -74.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds