Wall clock time and date at job start Fri Apr 10 2020 18:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99751 * 2 1 4 4 H 1.48501 * 109.47111 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47165 * 299.99974 * 3 2 1 6 6 H 1.48502 * 109.47091 * 59.99575 * 3 2 1 7 7 C 1.38807 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00250 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00025 * 180.02562 * 9 7 2 11 11 C 1.53043 * 109.45583 * 275.06584 * 10 9 7 12 12 C 1.53192 * 109.30860 * 178.61586 * 11 10 9 13 13 N 1.46926 * 108.77820 * 54.63429 * 12 11 10 14 14 C 1.34779 * 120.63044 * 126.36870 * 13 12 11 15 15 O 1.21283 * 119.99742 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00186 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47364 * 179.97438 * 16 14 13 18 18 H 1.08996 * 110.53810 * 56.39255 * 17 16 14 19 19 C 1.54231 * 110.60828 * 179.41175 * 17 16 14 20 20 C 1.51315 * 103.55472 * 118.51358 * 19 17 16 21 21 O 1.21232 * 125.39328 * 180.02562 * 20 19 17 22 22 N 1.33877 * 109.20745 * 0.02562 * 20 19 17 23 23 C 1.33880 * 114.47441 * 359.97438 * 22 20 19 24 24 O 1.21225 * 125.39126 * 179.97438 * 23 22 20 25 25 C 1.46925 * 118.73914 * 306.39111 * 13 12 11 26 26 C 1.53037 * 109.46106 * 154.99823 * 10 9 7 27 27 H 0.97001 * 120.00064 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99710 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.46250 * 35.02341 * 10 9 7 30 30 H 1.09001 * 109.50069 * 58.66705 * 11 10 9 31 31 H 1.09000 * 109.49902 * 298.56386 * 11 10 9 32 32 H 1.09006 * 109.58809 * 294.84764 * 12 11 10 33 33 H 1.09002 * 109.58657 * 174.42750 * 12 11 10 34 34 H 1.08995 * 109.47063 * 300.00414 * 16 14 13 35 35 H 1.09006 * 109.47000 * 59.99630 * 16 14 13 36 36 H 1.08995 * 110.60589 * 237.03767 * 19 17 16 37 37 H 1.09002 * 110.60083 * 0.02562 * 19 17 16 38 38 H 0.96999 * 122.75656 * 180.02562 * 22 20 19 39 39 H 1.08998 * 109.58340 * 173.39503 * 25 13 12 40 40 H 1.09003 * 109.58494 * 293.68068 * 25 13 12 41 41 H 1.08997 * 109.49928 * 61.43245 * 26 10 9 42 42 H 1.09005 * 109.52588 * 301.35214 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 2.4245 -4.0351 -1.4353 12 6 3.2201 -5.3442 -1.4272 13 7 2.4421 -6.3661 -0.7138 14 6 2.1739 -7.5533 -1.2927 15 8 2.5762 -7.7864 -2.4128 16 6 1.3741 -8.5911 -0.5482 17 6 1.2133 -9.8357 -1.4233 18 1 2.1878 -10.2172 -1.7283 19 6 0.4098 -10.9221 -0.6798 20 6 -0.8142 -11.1148 -1.5483 21 8 -1.7192 -11.8896 -1.3243 22 7 -0.7392 -10.2940 -2.6033 23 6 0.3591 -9.5291 -2.6340 24 8 0.6271 -8.7196 -3.4957 25 6 1.9616 -6.0691 0.6426 26 6 1.1801 -4.7519 0.6113 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.9681 -3.5501 0.5922 30 1 3.0304 -3.2438 -1.8767 31 1 1.5142 -4.1663 -2.0203 32 1 4.1725 -5.1899 -0.9200 33 1 3.3982 -5.6699 -2.4521 34 1 1.8930 -8.8582 0.3723 35 1 0.3906 -8.1876 -0.3068 36 1 0.9836 -11.8466 -0.6148 37 1 0.1242 -10.5756 0.3135 38 1 -1.4246 -10.2562 -3.2886 39 1 1.3093 -6.8731 0.9833 40 1 2.8113 -5.9763 1.3190 41 1 0.2815 -4.8763 0.0070 42 1 0.8997 -4.4711 1.6266 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997432115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:27 Heat of formation + Delta-G solvation = -89.816254 kcal Electronic energy + Delta-G solvation = -25775.785858 eV Core-core repulsion = 21949.201158 eV Total energy + Delta-G solvation = -3826.584700 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.15821 -40.02275 -38.79526 -37.37911 -36.15417 -34.50172 -33.94376 -32.05582 -30.99954 -29.57364 -28.65077 -25.64292 -24.72828 -22.93782 -22.70162 -22.09941 -21.22599 -20.09165 -18.87645 -18.19883 -17.32949 -17.00677 -16.94590 -16.48363 -15.75534 -15.62873 -14.92350 -14.84370 -14.46064 -14.24724 -14.02454 -13.86779 -13.63576 -13.57908 -13.30667 -12.95840 -12.85054 -12.53473 -12.23274 -12.07573 -11.66991 -11.49191 -11.00822 -10.94484 -10.90492 -10.82636 -10.57740 -10.44088 -10.24852 -10.22028 -9.92823 -9.72840 -9.59242 -8.93322 -8.47478 -7.00194 -5.80283 -3.09458 1.21116 2.41386 2.46212 2.68267 3.01664 3.40870 3.46654 3.48845 3.67915 3.82510 3.93764 4.23338 4.52192 4.56124 4.73365 4.89243 4.93324 5.06651 5.15179 5.20329 5.34350 5.39719 5.43868 5.56911 5.60747 5.67325 5.77228 5.88152 5.96487 6.19613 6.25744 6.32248 6.43121 6.54001 6.58147 6.90753 6.99764 7.03790 7.50300 7.59496 7.66932 8.25038 8.38055 9.49409 10.06487 10.40867 11.42369 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.026763 B = 0.002760 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.957952 B =10142.634587 C =10360.368376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.179 3.821 11 C -0.150 4.150 12 C 0.114 3.886 13 N -0.608 5.608 14 C 0.504 3.496 15 O -0.519 6.519 16 C -0.129 4.129 17 C -0.109 4.109 18 H 0.132 0.868 19 C -0.155 4.155 20 C 0.531 3.469 21 O -0.490 6.490 22 N -0.685 5.685 23 C 0.521 3.479 24 O -0.437 6.437 25 C 0.110 3.890 26 C -0.141 4.141 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.414 0.586 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.734 -23.584 2.041 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.191 4.191 12 C -0.008 4.008 13 N -0.342 5.342 14 C 0.290 3.710 15 O -0.395 6.395 16 C -0.169 4.169 17 C -0.131 4.131 18 H 0.150 0.850 19 C -0.195 4.195 20 C 0.319 3.681 21 O -0.362 6.362 22 N -0.352 5.352 23 C 0.306 3.694 24 O -0.303 6.303 25 C -0.013 4.013 26 C -0.180 4.180 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.254 0.746 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.891 -23.495 1.210 23.703 hybrid contribution -0.351 1.132 -0.325 1.229 sum 2.541 -22.363 0.886 22.524 Atomic orbital electron populations 1.69669 1.05131 1.25578 1.57701 1.24750 0.95510 0.97732 1.02974 0.86135 0.78798 0.84169 0.77192 1.20535 1.21875 1.21880 1.19274 0.91006 0.84067 1.42644 0.91105 1.42437 1.05781 0.99751 1.88542 1.20158 0.94302 0.85974 0.92645 1.22663 1.00198 0.94970 1.01288 1.21680 0.93638 0.87750 0.97758 1.48132 1.54317 1.14941 1.16783 1.20329 0.81085 0.82844 0.86697 1.90788 1.51927 1.78588 1.18164 1.21658 1.02555 0.93228 0.99467 1.21835 1.01482 0.96052 0.93683 0.85010 1.22607 0.94614 1.01546 1.00743 1.20758 0.87807 0.78240 0.81340 1.90822 1.37371 1.35234 1.72816 1.44891 1.24621 1.39024 1.26651 1.20694 0.81168 0.79649 0.87843 1.90931 1.71363 1.30042 1.37956 1.21779 0.98563 0.98054 0.82899 1.22216 0.99240 0.94325 1.02243 0.93546 0.78317 0.93416 0.90776 0.92334 0.91908 0.89629 0.86929 0.88286 0.85767 0.85780 0.74645 0.90376 0.91109 0.91839 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.52 5.12 -53.39 -0.27 -17.80 16 10 C 0.18 3.31 2.73 -67.89 -0.19 3.13 16 11 C -0.15 -2.64 5.66 -26.61 -0.15 -2.80 16 12 C 0.11 1.67 6.43 -3.71 -0.02 1.65 16 13 N -0.61 -7.71 2.97 -172.77 -0.51 -8.22 16 14 C 0.50 6.26 7.37 -10.99 -0.08 6.18 16 15 O -0.52 -8.44 12.98 -17.45 -0.23 -8.66 16 16 C -0.13 -0.91 3.38 -27.89 -0.09 -1.01 16 17 C -0.11 -0.73 2.72 -90.83 -0.25 -0.97 16 18 H 0.13 0.84 8.03 -51.93 -0.42 0.42 16 19 C -0.16 -0.63 6.67 -26.94 -0.18 -0.81 16 20 C 0.53 4.04 8.55 -11.09 -0.09 3.95 16 21 O -0.49 -5.40 18.02 5.60 0.10 -5.30 16 22 N -0.69 -5.47 5.48 -11.39 -0.06 -5.53 16 23 C 0.52 5.32 7.71 -11.09 -0.09 5.23 16 24 O -0.44 -6.66 15.42 -17.40 -0.27 -6.92 16 25 C 0.11 1.16 6.34 -3.71 -0.02 1.14 16 26 C -0.14 -2.03 5.55 -26.61 -0.15 -2.18 16 27 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 29 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.35 7.01 -51.93 -0.36 0.99 16 34 H 0.11 0.42 7.94 -51.93 -0.41 0.01 16 35 H 0.10 0.63 7.69 -51.93 -0.40 0.23 16 36 H 0.12 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.12 0.27 7.74 -51.93 -0.40 -0.14 16 38 H 0.41 2.92 8.96 -40.82 -0.37 2.55 16 39 H 0.08 0.56 5.93 -51.93 -0.31 0.25 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -36.49 344.79 -7.82 -44.31 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.91 Total: 6.54 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.56 Total: 6.42 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.12 Total: -58.66 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.39 Total: -20.89 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.49 -7.82 -44.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997432115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.505 kcal (2) G-P(sol) polarization free energy of solvation -36.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds