Wall clock time and date at job start Fri Apr 10 2020 18:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35271 * 126.70585 * 2 1 4 4 C 1.41943 * 103.95845 * 180.02562 * 3 2 1 5 5 O 1.35704 * 126.87971 * 179.97438 * 4 3 2 6 6 C 1.42892 * 116.99854 * 179.97438 * 5 4 3 7 7 C 1.50708 * 109.47168 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99449 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00151 * 179.97438 * 7 6 5 10 10 C 1.46933 * 120.63100 * 0.02562 * 9 7 6 11 11 C 1.53190 * 108.77445 * 126.36821 * 10 9 7 12 12 C 1.53036 * 109.31787 * 54.63570 * 11 10 9 13 13 C 1.53046 * 109.53388 * 298.63577 * 12 11 10 14 14 H 1.09001 * 109.49312 * 301.37850 * 13 12 11 15 15 N 1.46504 * 109.49686 * 181.32060 * 13 12 11 16 16 C 1.36926 * 120.00164 * 154.99894 * 15 13 12 17 17 H 1.08002 * 120.00254 * 359.97438 * 16 15 13 18 18 C 1.38816 * 120.00224 * 179.97438 * 16 15 13 19 19 N 1.31625 * 119.99759 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00243 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47143 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46825 * 119.99953 * 20 18 16 23 23 H 1.48498 * 109.46885 * 239.99491 * 20 18 16 24 24 C 1.46927 * 120.63325 * 179.72047 * 9 7 6 25 25 N 1.30615 * 106.23824 * 359.97438 * 4 3 2 26 26 O 1.20923 * 111.49931 * 359.70328 * 25 4 3 27 27 H 1.09002 * 109.47152 * 90.00418 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00519 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00500 * 1 2 3 30 30 H 1.07995 * 128.02669 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47242 * 300.00036 * 6 5 4 32 32 H 1.09003 * 109.47219 * 60.00402 * 6 5 4 33 33 H 1.08999 * 109.58376 * 246.15414 * 10 9 7 34 34 H 1.08996 * 109.58496 * 6.57491 * 10 9 7 35 35 H 1.09009 * 109.49155 * 174.58543 * 11 10 9 36 36 H 1.08997 * 109.49592 * 294.64547 * 11 10 9 37 37 H 1.09001 * 109.45870 * 58.64959 * 12 11 10 38 38 H 1.08997 * 109.46238 * 178.62714 * 12 11 10 39 39 H 0.97006 * 119.99505 * 334.99602 * 15 13 12 40 40 H 0.96998 * 119.99607 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.58030 * 353.42223 * 24 9 7 42 42 H 1.08997 * 109.58407 * 113.84452 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6246 0.5356 -0.0006 5 8 4.7954 1.2218 -0.0013 6 6 5.9988 0.4513 -0.0013 7 6 7.1880 1.3771 -0.0028 8 8 7.0212 2.5784 -0.0033 9 7 8.4367 0.8701 -0.0025 10 6 8.6547 -0.5830 -0.0013 11 6 9.5782 -0.9439 -1.1690 12 6 10.8617 -0.1158 -1.0740 13 6 10.5187 1.3725 -1.1716 14 1 10.0069 1.5668 -2.1142 15 7 11.7507 2.1631 -1.1123 16 6 11.7903 3.4122 -1.6718 17 1 10.9134 3.8146 -2.1572 18 6 12.9575 4.1615 -1.6151 19 7 14.0261 3.6714 -1.0231 20 14 13.0117 5.8653 -2.3790 21 1 11.6904 6.1813 -2.9785 22 1 13.3328 6.8675 -1.3312 23 1 14.0552 5.9014 -3.4348 24 6 9.6059 1.7598 -0.0101 25 7 3.4765 -0.7621 -0.0003 26 8 2.3084 -1.0749 0.0061 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 2.0312 2.1263 -0.0004 31 1 6.0280 -0.1768 0.8890 32 1 6.0275 -0.1778 -0.8910 33 1 9.1195 -0.8819 0.9382 34 1 7.7000 -1.0957 -0.1183 35 1 9.8254 -2.0046 -1.1228 36 1 9.0745 -0.7285 -2.1112 37 1 11.3518 -0.3137 -0.1208 38 1 11.5309 -0.3884 -1.8900 39 1 12.5384 1.8015 -0.6766 40 1 14.8415 4.1951 -0.9832 41 1 9.2786 2.7922 -0.1330 42 1 10.1500 1.6561 0.9286 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999424559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:33 Heat of formation + Delta-G solvation = 10.138209 kcal Electronic energy + Delta-G solvation = -25167.924663 eV Core-core repulsion = 21345.674314 eV Total energy + Delta-G solvation = -3822.250349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.16574 -40.28438 -38.82973 -37.20867 -34.56622 -34.16210 -32.81739 -32.39402 -31.27015 -29.46846 -28.27437 -27.70470 -24.94205 -23.98639 -23.68840 -21.95557 -21.72861 -20.27903 -18.97490 -18.21864 -18.12585 -17.14670 -17.11614 -16.76607 -16.33360 -15.76216 -14.94604 -14.55812 -14.39103 -14.23062 -14.21472 -13.87361 -13.73381 -13.66432 -13.44070 -13.06545 -12.86042 -12.79293 -12.48358 -12.36664 -11.87070 -11.44227 -11.35530 -11.08816 -10.87394 -10.70865 -10.63608 -10.19325 -9.85631 -9.82804 -9.81863 -9.60930 -9.46115 -9.11541 -8.44428 -7.03037 -5.80684 -3.10701 1.10489 2.00081 2.16210 2.61117 2.78659 3.29568 3.43884 3.50319 3.52900 3.90691 4.31986 4.45038 4.56234 4.61870 4.77620 4.81115 4.84998 4.88876 4.93470 5.01660 5.18106 5.20055 5.33071 5.44633 5.48347 5.53871 5.58209 5.75129 5.86295 5.97093 6.11405 6.15940 6.29774 6.42819 6.59524 6.75192 6.79499 6.95813 7.48895 7.70805 7.95413 8.21740 8.37389 9.49402 10.02486 10.37897 11.41503 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.002638 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.652256 B =10613.423626 C =11551.737576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 C -0.233 4.233 4 C 0.215 3.785 5 O -0.256 6.256 6 C 0.048 3.952 7 C 0.513 3.487 8 O -0.518 6.518 9 N -0.601 5.601 10 C 0.103 3.897 11 C -0.130 4.130 12 C -0.126 4.126 13 C 0.168 3.832 14 H 0.051 0.949 15 N -0.717 5.717 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.011 4.011 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.094 3.906 25 N -0.413 5.413 26 O 0.097 5.903 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.179 0.821 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.092 0.908 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.658 -13.839 3.197 28.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 C -0.254 4.254 4 C 0.017 3.983 5 O -0.160 6.160 6 C -0.031 4.031 7 C 0.298 3.702 8 O -0.394 6.394 9 N -0.336 5.336 10 C -0.020 4.020 11 C -0.169 4.169 12 C -0.165 4.165 13 C 0.056 3.944 14 H 0.069 0.931 15 N -0.358 5.358 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.030 4.030 25 N -0.141 5.141 26 O 0.037 5.963 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.196 0.804 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.823 -13.706 3.097 27.658 hybrid contribution 0.297 1.392 -0.185 1.435 sum -23.526 -12.314 2.912 26.714 Atomic orbital electron populations 1.20381 0.83488 1.04914 1.04409 1.24343 0.96475 0.85600 1.00978 1.21828 0.88320 1.01770 1.13503 1.22089 0.88566 0.88012 0.99611 1.86306 1.10018 1.30836 1.88862 1.22587 0.82422 0.93778 1.04316 1.19833 0.83653 0.88798 0.77892 1.90764 1.85005 1.15072 1.48510 1.48204 1.05424 1.07461 1.72558 1.21827 1.00148 0.80231 0.99795 1.21887 0.96778 1.00038 0.98194 1.21831 0.96405 0.95791 1.02450 1.20409 0.88700 0.89691 0.95580 0.93087 1.42378 1.08678 1.16645 1.68075 1.19319 0.97062 0.91994 1.29030 0.90961 1.24761 0.95965 0.98830 1.01150 1.69674 1.02076 1.37725 1.48477 0.86107 0.77398 0.84214 0.78468 1.20399 1.21750 1.21819 1.22781 0.84211 0.95024 1.00987 1.74155 0.97900 1.14231 1.27834 1.84783 1.10309 1.31983 1.69212 0.89072 0.88764 0.89543 0.80361 0.88819 0.88724 0.90842 0.90544 0.90733 0.91505 0.91900 0.91227 0.78011 0.93488 0.88952 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.45 36.01 0.38 0.16 16 2 C -0.01 -0.08 7.48 -35.36 -0.26 -0.34 16 3 C -0.23 -2.24 11.11 -39.22 -0.44 -2.68 16 4 C 0.22 2.76 8.01 -16.65 -0.13 2.62 16 5 O -0.26 -3.83 9.74 -38.73 -0.38 -4.21 16 6 C 0.05 0.62 4.49 36.01 0.16 0.79 16 7 C 0.51 8.56 7.78 -10.99 -0.09 8.48 16 8 O -0.52 -11.06 15.91 -14.35 -0.23 -11.28 16 9 N -0.60 -9.30 2.98 -173.05 -0.52 -9.82 16 10 C 0.10 1.16 6.34 -3.71 -0.02 1.13 16 11 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 12 C -0.13 -1.94 5.36 -26.69 -0.14 -2.09 16 13 C 0.17 3.31 2.91 -68.05 -0.20 3.11 16 14 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 15 N -0.72 -17.79 5.12 -53.54 -0.27 -18.07 16 16 C -0.24 -6.81 9.93 -15.06 -0.15 -6.96 16 17 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 20 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 C 0.09 1.78 5.98 -3.95 -0.02 1.76 16 25 N -0.41 -5.05 11.54 30.39 0.35 -4.70 16 26 O 0.10 0.98 11.19 17.08 0.19 1.17 16 27 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.09 1.03 7.94 -51.93 -0.41 0.62 16 32 H 0.09 1.07 7.69 -51.93 -0.40 0.67 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.67 5.93 -51.93 -0.31 0.36 16 35 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.39 10.03 7.80 -40.82 -0.32 9.71 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.09 2.07 7.01 -51.93 -0.36 1.70 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -35.00 353.74 -6.99 -41.99 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.00 Total: 5.22 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -1.18 Total: 3.90 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.29 Total: -59.90 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.41 Total: -14.32 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.00 -6.99 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999424559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.129 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds