Wall clock time and date at job start Fri Apr 10 2020 18:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35271 * 126.70585 * 2 1 4 4 C 1.41943 * 103.95845 * 180.02562 * 3 2 1 5 5 O 1.35704 * 126.87971 * 179.97438 * 4 3 2 6 6 C 1.42892 * 116.99854 * 179.97438 * 5 4 3 7 7 C 1.50708 * 109.47168 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99449 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00151 * 179.97438 * 7 6 5 10 10 C 1.46933 * 120.63100 * 0.02562 * 9 7 6 11 11 C 1.53190 * 108.77445 * 126.36821 * 10 9 7 12 12 C 1.53036 * 109.31787 * 54.63570 * 11 10 9 13 13 C 1.53046 * 109.53388 * 298.63577 * 12 11 10 14 14 H 1.09001 * 109.49312 * 301.37850 * 13 12 11 15 15 N 1.46504 * 109.49686 * 181.32060 * 13 12 11 16 16 C 1.36926 * 120.00164 * 154.99894 * 15 13 12 17 17 H 1.08002 * 120.00254 * 359.97438 * 16 15 13 18 18 C 1.38816 * 120.00224 * 179.97438 * 16 15 13 19 19 N 1.31625 * 119.99759 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00243 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47143 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46825 * 119.99953 * 20 18 16 23 23 H 1.48498 * 109.46885 * 239.99491 * 20 18 16 24 24 C 1.46927 * 120.63325 * 179.72047 * 9 7 6 25 25 N 1.30615 * 106.23824 * 359.97438 * 4 3 2 26 26 O 1.20923 * 111.49931 * 359.70328 * 25 4 3 27 27 H 1.09002 * 109.47152 * 90.00418 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00519 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00500 * 1 2 3 30 30 H 1.07995 * 128.02669 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47242 * 300.00036 * 6 5 4 32 32 H 1.09003 * 109.47219 * 60.00402 * 6 5 4 33 33 H 1.08999 * 109.58376 * 246.15414 * 10 9 7 34 34 H 1.08996 * 109.58496 * 6.57491 * 10 9 7 35 35 H 1.09009 * 109.49155 * 174.58543 * 11 10 9 36 36 H 1.08997 * 109.49592 * 294.64547 * 11 10 9 37 37 H 1.09001 * 109.45870 * 58.64959 * 12 11 10 38 38 H 1.08997 * 109.46238 * 178.62714 * 12 11 10 39 39 H 0.97006 * 119.99505 * 334.99602 * 15 13 12 40 40 H 0.96998 * 119.99607 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.58030 * 353.42223 * 24 9 7 42 42 H 1.08997 * 109.58407 * 113.84452 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6246 0.5356 -0.0006 5 8 4.7954 1.2218 -0.0013 6 6 5.9988 0.4513 -0.0013 7 6 7.1880 1.3771 -0.0028 8 8 7.0212 2.5784 -0.0033 9 7 8.4367 0.8701 -0.0025 10 6 8.6547 -0.5830 -0.0013 11 6 9.5782 -0.9439 -1.1690 12 6 10.8617 -0.1158 -1.0740 13 6 10.5187 1.3725 -1.1716 14 1 10.0069 1.5668 -2.1142 15 7 11.7507 2.1631 -1.1123 16 6 11.7903 3.4122 -1.6718 17 1 10.9134 3.8146 -2.1572 18 6 12.9575 4.1615 -1.6151 19 7 14.0261 3.6714 -1.0231 20 14 13.0117 5.8653 -2.3790 21 1 11.6904 6.1813 -2.9785 22 1 13.3328 6.8675 -1.3312 23 1 14.0552 5.9014 -3.4348 24 6 9.6059 1.7598 -0.0101 25 7 3.4765 -0.7621 -0.0003 26 8 2.3084 -1.0749 0.0061 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 2.0312 2.1263 -0.0004 31 1 6.0280 -0.1768 0.8890 32 1 6.0275 -0.1778 -0.8910 33 1 9.1195 -0.8819 0.9382 34 1 7.7000 -1.0957 -0.1183 35 1 9.8254 -2.0046 -1.1228 36 1 9.0745 -0.7285 -2.1112 37 1 11.3518 -0.3137 -0.1208 38 1 11.5309 -0.3884 -1.8900 39 1 12.5384 1.8015 -0.6766 40 1 14.8415 4.1951 -0.9832 41 1 9.2786 2.7922 -0.1330 42 1 10.1500 1.6561 0.9286 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999424559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:32 Heat of formation + Delta-G solvation = -15.345969 kcal Electronic energy + Delta-G solvation = -25169.029739 eV Core-core repulsion = 21345.674314 eV Total energy + Delta-G solvation = -3823.355426 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.95147 -41.54962 -39.93055 -38.62061 -36.31357 -34.79105 -34.06595 -33.55862 -32.81629 -30.91159 -29.35053 -28.56234 -26.19556 -25.91463 -24.49117 -23.33866 -22.66823 -21.64578 -20.24480 -19.19628 -19.07566 -18.93754 -18.07845 -17.88313 -17.41104 -17.03698 -16.67728 -15.92762 -15.68886 -15.50684 -15.34578 -15.13101 -14.90135 -14.55957 -14.24401 -14.05963 -13.95564 -13.89390 -13.73482 -13.23802 -13.13530 -12.94562 -12.90473 -12.55722 -12.20839 -12.14881 -12.06531 -11.95019 -11.74724 -11.39087 -11.18460 -10.99610 -10.52433 -10.28291 -9.88483 -9.07302 -8.02275 -5.31640 0.43551 1.12839 1.17534 1.31975 1.42075 1.43151 1.53258 2.06909 2.30302 2.50661 3.07454 3.22829 3.31022 3.67352 3.80363 3.85259 3.89210 3.94984 3.97595 4.00429 4.14577 4.27584 4.33676 4.38206 4.53801 4.67856 4.77357 4.79902 4.81969 4.83989 4.91317 4.97696 5.10322 5.27526 5.32764 5.37289 5.41017 5.49451 5.81386 6.20571 6.23798 6.91495 7.20258 7.27425 7.98776 8.24411 9.20355 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.002638 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.652256 B =10613.423626 C =11551.737576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.012 3.988 3 C -0.254 4.254 4 C 0.189 3.811 5 O -0.285 6.285 6 C 0.059 3.941 7 C 0.507 3.493 8 O -0.577 6.577 9 N -0.596 5.596 10 C 0.096 3.904 11 C -0.122 4.122 12 C -0.118 4.118 13 C 0.166 3.834 14 H 0.031 0.969 15 N -0.728 5.728 16 C -0.246 4.246 17 H 0.064 0.936 18 C -0.068 4.068 19 N -0.962 5.962 20 Si 0.968 3.032 21 H -0.274 1.274 22 H -0.291 1.291 23 H -0.287 1.287 24 C 0.108 3.892 25 N -0.427 5.427 26 O 0.094 5.906 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.192 0.808 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.379 0.621 40 H 0.253 0.747 41 H 0.048 0.952 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.100 -16.178 3.246 31.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.051 4.051 3 C -0.276 4.276 4 C -0.008 4.008 5 O -0.191 6.191 6 C -0.019 4.019 7 C 0.295 3.705 8 O -0.457 6.457 9 N -0.330 5.330 10 C -0.025 4.025 11 C -0.160 4.160 12 C -0.157 4.157 13 C 0.056 3.944 14 H 0.049 0.951 15 N -0.368 5.368 16 C -0.377 4.377 17 H 0.082 0.918 18 C -0.261 4.261 19 N -0.612 5.612 20 Si 0.797 3.203 21 H -0.199 1.199 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.017 4.017 25 N -0.155 5.155 26 O 0.034 5.966 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.121 0.879 30 H 0.210 0.790 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.211 0.789 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -26.305 -16.120 3.142 31.011 hybrid contribution 0.913 2.046 -0.194 2.249 sum -25.392 -14.074 2.947 29.181 Atomic orbital electron populations 1.20683 0.79827 1.06610 1.05989 1.25114 0.98032 0.84020 0.97945 1.22177 0.87480 1.03177 1.14763 1.22450 0.88566 0.88728 1.01077 1.86245 1.11067 1.32265 1.89482 1.22545 0.80459 0.92469 1.06456 1.20554 0.84807 0.88623 0.76516 1.90733 1.85917 1.17799 1.51206 1.48213 1.04094 1.09072 1.71664 1.22243 1.02282 0.77204 1.00725 1.21882 0.94430 1.01458 0.98223 1.21747 0.98653 0.92644 1.02635 1.20577 0.86840 0.92256 0.94708 0.95068 1.42502 1.10186 1.16227 1.67920 1.19534 0.96620 0.93318 1.28277 0.91793 1.25495 0.95864 1.02332 1.02380 1.69795 1.02429 1.38940 1.50057 0.85157 0.77435 0.80092 0.77594 1.19906 1.21773 1.21333 1.22215 0.85399 0.93665 1.00435 1.74124 0.99045 1.13964 1.28377 1.84739 1.10061 1.32809 1.68972 0.87299 0.86972 0.87896 0.79046 0.86243 0.86536 0.88776 0.86971 0.86691 0.91759 0.91159 0.91816 0.78869 0.93770 0.93314 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.17 10.45 71.24 0.74 0.57 16 2 C 0.01 0.16 7.48 25.00 0.19 0.35 16 3 C -0.25 -4.60 11.11 22.50 0.25 -4.35 16 4 C 0.19 4.69 8.01 85.79 0.69 5.38 16 5 O -0.28 -8.52 9.74 -71.21 -0.69 -9.22 16 6 C 0.06 1.46 4.49 71.24 0.32 1.78 16 7 C 0.51 17.03 7.78 87.66 0.68 17.71 16 8 O -0.58 -25.87 15.91 16.01 0.25 -25.62 16 9 N -0.60 -18.09 2.98 -819.81 -2.44 -20.54 16 10 C 0.10 1.84 6.34 86.36 0.55 2.39 16 11 C -0.12 -2.42 6.08 30.67 0.19 -2.23 16 12 C -0.12 -3.49 5.36 30.62 0.16 -3.33 16 13 C 0.17 6.71 2.91 44.91 0.13 6.84 16 14 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 15 N -0.73 -37.31 5.12 -323.31 -1.66 -38.97 16 16 C -0.25 -14.22 9.93 84.04 0.83 -13.38 16 17 H 0.06 3.73 7.83 -2.91 -0.02 3.71 16 18 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 19 N -0.96 -59.18 13.06 21.65 0.28 -58.90 16 20 Si 0.97 47.95 29.55 68.60 2.03 49.98 16 21 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 24 C 0.11 4.24 5.98 86.20 0.52 4.76 16 25 N -0.43 -9.79 11.54 -172.59 -1.99 -11.78 16 26 O 0.09 1.72 11.19 71.29 0.80 2.52 16 27 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.10 -0.03 8.14 -2.38 -0.02 -0.05 16 30 H 0.19 2.73 8.06 -2.91 -0.02 2.70 16 31 H 0.12 2.32 7.94 -2.39 -0.02 2.30 16 32 H 0.12 2.36 7.69 -2.39 -0.02 2.34 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.11 1.43 5.93 -2.39 -0.01 1.41 16 35 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.38 20.26 7.80 -92.70 -0.72 19.53 16 40 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 41 H 0.05 2.33 7.01 -2.39 -0.02 2.31 16 42 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -81.00 353.74 2.61 -78.39 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.32 Total: 21.18 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 5.72 Total: 12.95 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -5.81 Total: -130.18 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: 0.36 Total: -32.31 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -81.00 2.61 -78.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999424559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.046 kcal (2) G-P(sol) polarization free energy of solvation -81.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds