Wall clock time and date at job start Fri Apr 10 2020 18:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00112 * 2 1 4 4 H 1.48505 * 109.47222 * 240.00205 * 3 2 1 5 5 H 1.48498 * 109.47078 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47443 * 120.00251 * 3 2 1 7 7 C 1.38818 * 120.00517 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00340 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99333 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99680 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.52384 * 324.91610 * 10 9 7 12 12 C 1.53038 * 109.49983 * 84.99881 * 10 9 7 13 13 C 1.53041 * 109.52795 * 181.31199 * 12 10 9 14 14 C 1.53188 * 109.30768 * 298.63969 * 13 12 10 15 15 N 1.46923 * 108.77923 * 54.63663 * 14 13 12 16 16 C 1.34777 * 120.63307 * 126.40656 * 15 14 13 17 17 O 1.21286 * 119.99913 * 355.62046 * 16 15 14 18 18 C 1.50703 * 120.00253 * 175.61551 * 16 15 14 19 19 C 1.53245 * 109.62129 * 277.15166 * 18 16 15 20 20 C 1.50584 * 109.14958 * 184.64383 * 19 18 16 21 21 O 1.21229 * 119.35513 * 209.10654 * 20 19 18 22 22 N 1.34140 * 121.28523 * 29.11387 * 20 19 18 23 23 C 1.34143 * 122.58637 * 359.44950 * 22 20 19 24 24 O 1.21226 * 119.36451 * 180.54669 * 23 22 20 25 25 C 1.50597 * 121.27980 * 0.52787 * 23 22 20 26 26 C 1.46931 * 118.73891 * 306.39076 * 15 14 13 27 27 H 0.97000 * 120.00299 * 359.97438 * 1 2 3 28 28 H 0.96992 * 120.00093 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.45802 * 61.28924 * 12 10 9 30 30 H 1.09001 * 109.45461 * 301.32293 * 12 10 9 31 31 H 1.08999 * 109.49952 * 58.59013 * 13 12 10 32 32 H 1.08998 * 109.49325 * 178.65631 * 13 12 10 33 33 H 1.09005 * 109.58711 * 174.42311 * 14 13 12 34 34 H 1.09002 * 109.59093 * 294.70632 * 14 13 12 35 35 H 1.08997 * 109.61370 * 37.70255 * 18 16 15 36 36 H 1.09006 * 109.52099 * 304.56230 * 19 18 16 37 37 H 1.08994 * 109.52431 * 64.75288 * 19 18 16 38 38 H 0.96994 * 118.70786 * 179.47677 * 22 20 19 39 39 H 1.08997 * 109.52354 * 211.02039 * 25 23 22 40 40 H 1.08993 * 109.52131 * 90.82872 * 25 23 22 41 41 H 1.08998 * 109.58511 * 173.39404 * 26 15 14 42 42 H 1.08999 * 109.58211 * 293.81751 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9684 -3.5519 -0.5911 12 6 2.4225 -4.0363 1.4366 13 6 3.2161 -5.3449 1.4346 14 6 2.3497 -6.4618 0.8441 15 7 1.8754 -6.0417 -0.4815 16 6 2.0752 -6.8227 -1.5616 17 8 2.7202 -7.8448 -1.4600 18 6 1.4972 -6.4260 -2.8957 19 6 0.0321 -6.8684 -2.9738 20 6 -0.5013 -6.5699 -4.3500 21 8 -1.6816 -6.3322 -4.4912 22 7 0.3041 -6.5621 -5.4227 23 6 1.6206 -6.8054 -5.3394 24 8 2.2958 -6.7736 -6.3457 25 6 2.2763 -7.1170 -4.0199 26 6 1.1787 -4.7542 -0.6072 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 1.5110 -4.1652 2.0203 30 1 3.0280 -3.2451 1.8786 31 1 4.1153 -5.2241 0.8306 32 1 3.4958 -5.6022 2.4561 33 1 2.9420 -7.3719 0.7487 34 1 1.4973 -6.6474 1.4976 35 1 1.5628 -5.3446 -3.0159 36 1 -0.0359 -7.9390 -2.7807 37 1 -0.5524 -6.3255 -2.2311 38 1 -0.0806 -6.3727 -6.2927 39 1 3.3035 -6.7526 -4.0286 40 1 2.2724 -8.1946 -3.8568 41 1 0.9983 -4.5377 -1.6602 42 1 0.2294 -4.7989 -0.0734 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000451292.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:35 Heat of formation + Delta-G solvation = -98.244479 kcal Electronic energy + Delta-G solvation = -26294.041228 eV Core-core repulsion = 22467.091053 eV Total energy + Delta-G solvation = -3826.950175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.88104 -40.20040 -39.08289 -37.65153 -35.72524 -34.45742 -34.18598 -32.38100 -31.40990 -29.19679 -28.42390 -26.31042 -24.39159 -23.91649 -23.48224 -21.92198 -20.38288 -19.65496 -19.02543 -18.08232 -17.73494 -17.43675 -17.08466 -16.32274 -15.69084 -15.54270 -15.02922 -14.77577 -14.63564 -14.53025 -14.35148 -13.97857 -13.88689 -13.62052 -13.35291 -12.95388 -12.85061 -12.59870 -12.34337 -11.82179 -11.64726 -11.22967 -11.08291 -11.02488 -10.97203 -10.74302 -10.55668 -10.53404 -10.51716 -10.46392 -10.20675 -9.81582 -9.79743 -9.02071 -8.62239 -7.12159 -5.88687 -3.19404 1.19563 2.33769 2.41947 2.48816 2.86943 3.37164 3.42504 3.43046 3.63522 3.99841 4.10178 4.23272 4.49399 4.57590 4.65918 4.97784 5.03264 5.13518 5.14817 5.20135 5.29928 5.36384 5.45677 5.46610 5.52004 5.68366 5.71372 5.74040 5.83070 5.99423 6.18512 6.26777 6.29417 6.50837 6.53424 6.71148 6.89418 7.04936 7.30252 7.51431 7.59096 7.97631 8.28768 9.40574 9.93262 10.27976 11.33311 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.012190 B = 0.004224 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.410986 B = 6627.640506 C = 7859.122097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.167 3.833 11 H 0.052 0.948 12 C -0.138 4.138 13 C -0.133 4.133 14 C 0.112 3.888 15 N -0.598 5.598 16 C 0.528 3.472 17 O -0.543 6.543 18 C -0.120 4.120 19 C -0.132 4.132 20 C 0.531 3.469 21 O -0.495 6.495 22 N -0.676 5.676 23 C 0.529 3.471 24 O -0.500 6.500 25 C -0.124 4.124 26 C 0.093 3.907 27 H 0.257 0.743 28 H 0.385 0.615 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.414 0.586 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.085 0.915 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 -16.201 -3.199 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.056 3.944 11 H 0.070 0.930 12 C -0.179 4.179 13 C -0.172 4.172 14 C -0.010 4.010 15 N -0.330 5.330 16 C 0.314 3.686 17 O -0.420 6.420 18 C -0.141 4.141 19 C -0.172 4.172 20 C 0.320 3.680 21 O -0.367 6.367 22 N -0.341 5.341 23 C 0.318 3.682 24 O -0.372 6.372 25 C -0.164 4.164 26 C -0.030 4.030 27 H 0.067 0.933 28 H 0.218 0.782 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.253 0.747 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.104 0.896 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.114 -16.469 -3.536 16.976 hybrid contribution -0.078 1.274 -0.234 1.298 sum 2.036 -15.194 -3.771 15.787 Atomic orbital electron populations 1.69633 1.05124 1.26050 1.56980 1.24740 0.95497 0.97734 1.02474 0.86281 0.78585 0.83460 0.77919 1.21187 1.21618 1.21184 1.19133 0.90957 0.83800 1.43684 0.91158 1.42306 1.05759 0.99444 1.88753 1.20477 0.94465 0.85789 0.93659 0.92997 1.22291 0.99758 0.95479 1.00343 1.21928 0.98847 0.95775 1.00625 1.21660 0.98513 0.98435 0.82394 1.48112 1.56802 1.20174 1.07892 1.19947 0.80127 0.83597 0.84890 1.90697 1.40568 1.25659 1.85126 1.21575 0.94751 1.03841 0.93947 1.21898 0.95113 1.06044 0.94144 1.20729 0.86035 0.74556 0.86728 1.90827 1.15964 1.43702 1.86179 1.44872 1.10306 1.65811 1.13148 1.20909 0.81080 0.74049 0.92133 1.90803 1.61976 1.46747 1.37703 1.21809 1.01293 1.04980 0.88316 1.22320 0.96203 0.81984 1.02466 0.93279 0.78152 0.92387 0.91459 0.91848 0.91286 0.89272 0.91386 0.86544 0.86232 0.85827 0.74689 0.86146 0.85685 0.89643 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.55 13.06 55.49 0.72 -25.83 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.41 29.55 -169.99 -5.02 16.38 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.28 9.93 -15.05 -0.15 -6.43 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.72 -16.06 5.12 -53.32 -0.27 -16.33 16 10 C 0.17 2.83 2.92 -67.83 -0.20 2.63 16 11 H 0.05 0.94 8.08 -51.92 -0.42 0.52 16 12 C -0.14 -2.12 5.47 -26.69 -0.15 -2.27 16 13 C -0.13 -1.61 6.08 -26.61 -0.16 -1.77 16 14 C 0.11 1.26 6.44 -3.71 -0.02 1.24 16 15 N -0.60 -7.01 2.97 -172.78 -0.51 -7.53 16 16 C 0.53 5.99 6.85 -10.98 -0.08 5.91 16 17 O -0.54 -7.41 15.39 5.55 0.09 -7.32 16 18 C -0.12 -1.07 1.82 -91.52 -0.17 -1.24 16 19 C -0.13 -1.06 5.34 -27.81 -0.15 -1.21 16 20 C 0.53 5.26 7.74 -11.33 -0.09 5.17 16 21 O -0.49 -6.63 17.88 5.60 0.10 -6.53 16 22 N -0.68 -6.18 5.09 -11.75 -0.06 -6.24 16 23 C 0.53 5.26 7.74 -11.32 -0.09 5.17 16 24 O -0.50 -6.62 17.88 5.60 0.10 -6.52 16 25 C -0.12 -1.06 4.95 -27.81 -0.14 -1.20 16 26 C 0.09 1.22 5.54 -3.72 -0.02 1.20 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.38 9.10 7.80 -40.82 -0.32 8.78 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.02 7.00 -51.93 -0.36 0.66 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.12 1.07 6.22 -51.93 -0.32 0.74 16 36 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.12 0.98 7.90 -51.93 -0.41 0.57 16 38 H 0.41 3.48 8.79 -40.82 -0.36 3.12 16 39 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.13 0.97 7.73 -51.93 -0.40 0.57 16 41 H 0.09 1.05 5.43 -51.93 -0.28 0.77 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -32.29 344.80 -6.97 -39.26 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.80 Total: 8.57 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -1.50 Total: 6.91 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.12 Total: -55.93 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: 0.29 Total: -20.38 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.29 -6.97 -39.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000451292.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.989 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds