Wall clock time and date at job start Fri Apr 10 2020 18:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00112 * 2 1 4 4 H 1.48505 * 109.47222 * 240.00205 * 3 2 1 5 5 H 1.48498 * 109.47078 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47443 * 120.00251 * 3 2 1 7 7 C 1.38818 * 120.00517 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00340 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99333 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99680 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.52384 * 324.91610 * 10 9 7 12 12 C 1.53038 * 109.49983 * 84.99881 * 10 9 7 13 13 C 1.53041 * 109.52795 * 181.31199 * 12 10 9 14 14 C 1.53188 * 109.30768 * 298.63969 * 13 12 10 15 15 N 1.46923 * 108.77923 * 54.63663 * 14 13 12 16 16 C 1.34777 * 120.63307 * 126.40656 * 15 14 13 17 17 O 1.21286 * 119.99913 * 355.62046 * 16 15 14 18 18 C 1.50703 * 120.00253 * 175.61551 * 16 15 14 19 19 C 1.53245 * 109.62129 * 277.15166 * 18 16 15 20 20 C 1.50584 * 109.14958 * 184.64383 * 19 18 16 21 21 O 1.21229 * 119.35513 * 209.10654 * 20 19 18 22 22 N 1.34140 * 121.28523 * 29.11387 * 20 19 18 23 23 C 1.34143 * 122.58637 * 359.44950 * 22 20 19 24 24 O 1.21226 * 119.36451 * 180.54669 * 23 22 20 25 25 C 1.50597 * 121.27980 * 0.52787 * 23 22 20 26 26 C 1.46931 * 118.73891 * 306.39076 * 15 14 13 27 27 H 0.97000 * 120.00299 * 359.97438 * 1 2 3 28 28 H 0.96992 * 120.00093 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.45802 * 61.28924 * 12 10 9 30 30 H 1.09001 * 109.45461 * 301.32293 * 12 10 9 31 31 H 1.08999 * 109.49952 * 58.59013 * 13 12 10 32 32 H 1.08998 * 109.49325 * 178.65631 * 13 12 10 33 33 H 1.09005 * 109.58711 * 174.42311 * 14 13 12 34 34 H 1.09002 * 109.59093 * 294.70632 * 14 13 12 35 35 H 1.08997 * 109.61370 * 37.70255 * 18 16 15 36 36 H 1.09006 * 109.52099 * 304.56230 * 19 18 16 37 37 H 1.08994 * 109.52431 * 64.75288 * 19 18 16 38 38 H 0.96994 * 118.70786 * 179.47677 * 22 20 19 39 39 H 1.08997 * 109.52354 * 211.02039 * 25 23 22 40 40 H 1.08993 * 109.52131 * 90.82872 * 25 23 22 41 41 H 1.08998 * 109.58511 * 173.39404 * 26 15 14 42 42 H 1.08999 * 109.58211 * 293.81751 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9684 -3.5519 -0.5911 12 6 2.4225 -4.0363 1.4366 13 6 3.2161 -5.3449 1.4346 14 6 2.3497 -6.4618 0.8441 15 7 1.8754 -6.0417 -0.4815 16 6 2.0752 -6.8227 -1.5616 17 8 2.7202 -7.8448 -1.4600 18 6 1.4972 -6.4260 -2.8957 19 6 0.0321 -6.8684 -2.9738 20 6 -0.5013 -6.5699 -4.3500 21 8 -1.6816 -6.3322 -4.4912 22 7 0.3041 -6.5621 -5.4227 23 6 1.6206 -6.8054 -5.3394 24 8 2.2958 -6.7736 -6.3457 25 6 2.2763 -7.1170 -4.0199 26 6 1.1787 -4.7542 -0.6072 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 1.5110 -4.1652 2.0203 30 1 3.0280 -3.2451 1.8786 31 1 4.1153 -5.2241 0.8306 32 1 3.4958 -5.6022 2.4561 33 1 2.9420 -7.3719 0.7487 34 1 1.4973 -6.6474 1.4976 35 1 1.5628 -5.3446 -3.0159 36 1 -0.0359 -7.9390 -2.7807 37 1 -0.5524 -6.3255 -2.2311 38 1 -0.0806 -6.3727 -6.2927 39 1 3.3035 -6.7526 -4.0286 40 1 2.2724 -8.1946 -3.8568 41 1 0.9983 -4.5377 -1.6602 42 1 0.2294 -4.7989 -0.0734 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000451292.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:35 Heat of formation + Delta-G solvation = -122.020980 kcal Electronic energy + Delta-G solvation = -26295.072254 eV Core-core repulsion = 22467.091053 eV Total energy + Delta-G solvation = -3827.981201 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.71896 -41.17810 -39.98889 -38.81107 -36.62625 -36.02200 -35.01446 -33.70120 -32.87153 -29.98015 -29.92570 -27.27377 -25.70296 -25.36418 -24.29707 -23.11026 -21.58149 -20.41601 -20.12182 -19.14129 -18.88408 -18.60168 -18.09207 -17.27406 -16.81121 -16.59210 -16.29373 -15.80440 -15.63160 -15.52286 -15.45627 -15.23958 -15.02466 -14.87301 -14.67131 -14.20368 -13.85928 -13.58386 -13.40372 -12.94326 -12.83037 -12.54851 -12.43767 -12.32702 -12.16543 -12.05588 -11.93871 -11.81001 -11.68890 -11.52485 -11.42238 -11.38774 -10.94968 -10.70555 -9.66974 -8.98490 -7.93003 -5.20862 0.36549 1.44345 1.49997 1.50467 1.56482 1.59530 1.70497 1.94825 2.57784 2.87433 3.13796 3.36064 3.40851 3.48414 3.79059 3.81896 3.98132 4.07062 4.07794 4.15704 4.36045 4.40980 4.43245 4.49905 4.57622 4.71318 4.79683 4.84218 4.88070 4.95034 4.98674 5.08960 5.16025 5.42049 5.49230 5.53266 5.61797 5.71296 6.24902 6.27817 6.34936 6.71277 7.04532 7.36956 8.10420 8.33526 9.29488 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.012190 B = 0.004224 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.410986 B = 6627.640506 C = 7859.122097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.068 4.068 3 Si 0.963 3.037 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.072 0.928 9 N -0.731 5.731 10 C 0.162 3.838 11 H 0.040 0.960 12 C -0.131 4.131 13 C -0.122 4.122 14 C 0.112 3.888 15 N -0.597 5.597 16 C 0.533 3.467 17 O -0.560 6.560 18 C -0.113 4.113 19 C -0.126 4.126 20 C 0.540 3.460 21 O -0.531 6.531 22 N -0.671 5.671 23 C 0.540 3.460 24 O -0.534 6.534 25 C -0.117 4.117 26 C 0.107 3.893 27 H 0.250 0.750 28 H 0.376 0.624 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.416 0.584 39 H 0.121 0.879 40 H 0.140 0.860 41 H 0.095 0.905 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.498 -17.689 -2.785 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.260 4.260 3 Si 0.792 3.208 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.206 1.206 7 C -0.368 4.368 8 H 0.090 0.910 9 N -0.372 5.372 10 C 0.052 3.948 11 H 0.059 0.941 12 C -0.171 4.171 13 C -0.161 4.161 14 C -0.010 4.010 15 N -0.329 5.329 16 C 0.321 3.679 17 O -0.439 6.439 18 C -0.134 4.134 19 C -0.165 4.165 20 C 0.330 3.670 21 O -0.405 6.405 22 N -0.335 5.335 23 C 0.330 3.670 24 O -0.408 6.408 25 C -0.157 4.157 26 C -0.017 4.017 27 H 0.059 0.941 28 H 0.209 0.791 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.161 0.839 37 H 0.148 0.852 38 H 0.256 0.744 39 H 0.140 0.860 40 H 0.157 0.843 41 H 0.113 0.887 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.809 -18.001 -3.113 18.483 hybrid contribution -0.208 1.650 -0.349 1.700 sum 2.601 -16.351 -3.462 16.915 Atomic orbital electron populations 1.69765 1.06334 1.26025 1.59388 1.25401 0.96207 1.00578 1.03855 0.85379 0.77325 0.80026 0.78035 1.20700 1.22433 1.20649 1.19455 0.91216 0.85100 1.41040 0.91014 1.42434 1.05525 1.00480 1.88754 1.20677 0.94273 0.85034 0.94785 0.94148 1.22114 0.99784 0.96556 0.98632 1.21838 0.98116 0.94112 1.02026 1.21730 0.99028 0.97927 0.82285 1.48087 1.56774 1.19564 1.08445 1.20143 0.79496 0.83055 0.85160 1.90702 1.41367 1.26466 1.85411 1.21509 0.95241 1.03844 0.92799 1.21929 0.94131 1.07595 0.92869 1.20995 0.85402 0.73306 0.87292 1.90825 1.17503 1.45514 1.86649 1.44845 1.10144 1.65145 1.13407 1.21080 0.80871 0.72900 0.92122 1.90800 1.62654 1.48433 1.38951 1.21794 1.01030 1.05777 0.87094 1.22049 0.95513 0.81303 1.02822 0.94072 0.79121 0.92424 0.94038 0.92458 0.89176 0.88840 0.89774 0.86594 0.83935 0.85247 0.74397 0.86036 0.84276 0.88712 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.79 13.06 21.65 0.28 -55.51 16 2 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 3 Si 0.96 44.22 29.55 68.60 2.03 46.25 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.24 -12.11 9.93 84.03 0.83 -11.27 16 8 H 0.07 3.59 7.83 -2.92 -0.02 3.56 16 9 N -0.73 -32.43 5.12 -322.60 -1.65 -34.08 16 10 C 0.16 5.31 2.92 45.06 0.13 5.44 16 11 H 0.04 1.43 8.08 -2.38 -0.02 1.41 16 12 C -0.13 -3.86 5.47 30.62 0.17 -3.69 16 13 C -0.12 -2.67 6.08 30.67 0.19 -2.48 16 14 C 0.11 2.18 6.44 86.36 0.56 2.74 16 15 N -0.60 -12.40 2.97 -818.95 -2.43 -14.84 16 16 C 0.53 10.61 6.85 87.66 0.60 11.21 16 17 O -0.56 -13.65 15.39 -3.05 -0.05 -13.70 16 18 C -0.11 -1.74 1.82 -11.38 -0.02 -1.76 16 19 C -0.13 -1.69 5.34 29.89 0.16 -1.53 16 20 C 0.54 9.83 7.74 87.72 0.68 10.51 16 21 O -0.53 -13.70 17.88 -2.87 -0.05 -13.75 16 22 N -0.67 -11.43 5.09 -428.62 -2.18 -13.61 16 23 C 0.54 9.96 7.74 87.72 0.68 10.64 16 24 O -0.53 -13.70 17.88 -2.86 -0.05 -13.75 16 25 C -0.12 -1.75 4.95 29.90 0.15 -1.60 16 26 C 0.11 2.57 5.54 86.35 0.48 3.05 16 27 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.38 17.83 7.80 -92.71 -0.72 17.11 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 1.83 7.00 -2.38 -0.02 1.82 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.12 1.86 6.22 -2.39 -0.01 1.85 16 36 H 0.14 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.13 1.69 7.90 -2.39 -0.02 1.67 16 38 H 0.42 6.71 8.79 -92.71 -0.81 5.90 16 39 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.14 1.76 7.73 -2.39 -0.02 1.75 16 41 H 0.09 2.13 5.43 -2.39 -0.01 2.12 16 42 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -69.10 344.80 0.49 -68.61 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -0.47 Total: 26.32 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 5.07 Total: 18.06 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -5.99 Total: -118.04 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.15 Total: -41.20 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -69.10 0.49 -68.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000451292.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.415 kcal (2) G-P(sol) polarization free energy of solvation -69.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds