Wall clock time and date at job start Fri Apr 10 2020 18:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00479 * 2 1 4 4 H 1.48500 * 109.47389 * 240.00149 * 3 2 1 5 5 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47102 * 119.99801 * 3 2 1 7 7 C 1.38811 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99892 * 179.72716 * 9 7 2 11 11 H 1.08997 * 109.50402 * 35.06335 * 10 9 7 12 12 C 1.53045 * 109.49861 * 155.16163 * 10 9 7 13 13 C 1.53036 * 109.53904 * 181.31693 * 12 10 9 14 14 C 1.53197 * 109.31163 * 298.63062 * 13 12 10 15 15 N 1.46926 * 108.77500 * 54.63555 * 14 13 12 16 16 C 1.34771 * 120.62820 * 126.36848 * 15 14 13 17 17 O 1.21281 * 120.00174 * 180.02562 * 16 15 14 18 18 C 1.50699 * 120.00432 * 0.02562 * 16 15 14 19 19 N 1.46503 * 109.47613 * 179.97438 * 18 16 15 20 20 C 1.33876 * 122.76279 * 269.71504 * 19 18 16 21 21 O 1.21222 * 125.39781 * 359.97438 * 20 19 18 22 22 C 1.51310 * 109.20253 * 179.83930 * 20 19 18 23 23 C 1.54228 * 103.56107 * 0.38437 * 22 20 19 24 24 C 1.33874 * 122.75877 * 89.99881 * 19 18 16 25 25 O 1.21227 * 125.39801 * 0.02562 * 24 19 18 26 26 C 1.46928 * 118.74046 * 306.39412 * 15 14 13 27 27 H 0.97004 * 119.99151 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99317 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.45888 * 301.33164 * 12 10 9 30 30 H 1.08992 * 109.45941 * 61.29087 * 12 10 9 31 31 H 1.08998 * 109.49644 * 178.68576 * 13 12 10 32 32 H 1.08995 * 109.52633 * 58.59727 * 13 12 10 33 33 H 1.09003 * 109.58406 * 294.85051 * 14 13 12 34 34 H 1.08996 * 109.58489 * 174.42793 * 14 13 12 35 35 H 1.08996 * 109.47353 * 299.99946 * 18 16 15 36 36 H 1.09002 * 109.46744 * 60.00032 * 18 16 15 37 37 H 1.09006 * 110.79910 * 241.77524 * 22 20 19 38 38 H 1.09004 * 110.41919 * 118.81328 * 22 20 19 39 39 H 1.08996 * 110.61112 * 241.26530 * 23 22 20 40 40 H 1.09001 * 110.74032 * 118.35488 * 23 22 20 41 41 H 1.08999 * 109.58560 * 293.82097 * 26 15 14 42 42 H 1.08997 * 109.70489 * 173.46154 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6568 -0.0082 11 1 2.9703 -3.5533 0.5789 12 6 1.1816 -4.7556 0.5977 13 6 1.9578 -6.0743 0.6214 14 6 2.3158 -6.4773 -0.8126 15 7 3.0341 -5.3657 -1.4508 16 6 4.2363 -5.5653 -2.0262 17 8 4.8194 -4.6395 -2.5494 18 6 4.8562 -6.9389 -2.0195 19 7 6.1516 -6.8935 -2.7024 20 6 6.2858 -7.1101 -4.0167 21 8 5.3809 -7.3635 -4.7825 22 6 7.7454 -6.9853 -4.3952 23 6 8.4402 -6.6653 -3.0560 24 6 7.2992 -6.6374 -2.0624 25 8 7.4074 -6.4183 -0.8750 26 6 2.4170 -4.0323 -1.4493 27 1 -0.4849 0.8401 0.0004 28 1 0.3554 -2.3880 -0.0016 29 1 0.9043 -4.4793 1.6150 30 1 0.2809 -4.8751 -0.0042 31 1 1.3417 -6.8510 1.0744 32 1 2.8712 -5.9491 1.2029 33 1 1.4042 -6.6915 -1.3704 34 1 2.9525 -7.3618 -0.7954 35 1 4.9990 -7.2681 -0.9903 36 1 4.1978 -7.6371 -2.5363 37 1 7.8926 -6.1732 -5.1073 38 1 8.1143 -7.9263 -4.8034 39 1 8.9328 -5.6941 -3.1017 40 1 9.1559 -7.4454 -2.7963 41 1 1.5136 -4.0471 -2.0590 42 1 3.1184 -3.3023 -1.8531 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000874968.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:39 Heat of formation + Delta-G solvation = -79.780343 kcal Electronic energy + Delta-G solvation = -26141.039275 eV Core-core repulsion = 22314.889765 eV Total energy + Delta-G solvation = -3826.149510 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.17531 -39.82855 -38.77435 -37.35691 -36.01851 -34.55215 -33.71000 -32.34124 -31.21497 -29.07707 -27.67352 -26.46894 -24.91832 -23.95949 -22.65305 -21.92730 -20.93515 -19.72816 -18.87123 -17.85503 -17.38437 -17.09697 -16.72596 -16.61460 -15.56249 -15.33372 -14.86768 -14.58173 -14.43166 -14.25550 -14.17825 -14.16064 -13.82736 -13.50424 -13.28538 -13.08042 -13.01987 -12.52808 -12.39590 -12.12637 -11.71602 -11.39094 -11.09218 -10.91453 -10.83323 -10.69141 -10.60342 -10.55256 -10.29549 -10.23609 -9.84829 -9.73707 -9.46923 -9.07746 -8.40640 -7.00796 -5.78826 -3.08735 1.29187 2.07057 2.48015 2.64402 3.18411 3.46350 3.49804 3.52031 3.76734 3.90212 4.10206 4.37003 4.52758 4.57982 4.74785 4.79634 4.91107 5.03555 5.08110 5.09653 5.20844 5.25163 5.27924 5.46948 5.51559 5.57686 5.77363 5.88949 6.00652 6.14343 6.18740 6.32940 6.45948 6.52352 6.67076 6.80854 6.98150 7.06065 7.46468 7.56931 7.71458 8.23059 8.39549 9.51239 10.04730 10.40185 11.43371 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.016241 B = 0.003628 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.610572 B = 7715.621929 C = 8576.706907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.168 3.832 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.131 4.131 14 C 0.105 3.895 15 N -0.601 5.601 16 C 0.499 3.501 17 O -0.534 6.534 18 C 0.079 3.921 19 N -0.559 5.559 20 C 0.531 3.469 21 O -0.481 6.481 22 C -0.154 4.154 23 C -0.154 4.154 24 C 0.530 3.470 25 O -0.478 6.478 26 C 0.093 3.907 27 H 0.256 0.744 28 H 0.386 0.614 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.063 0.937 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.914 -21.392 -5.211 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.164 4.164 13 C -0.169 4.169 14 C -0.018 4.018 15 N -0.335 5.335 16 C 0.285 3.715 17 O -0.410 6.410 18 C -0.046 4.046 19 N -0.302 5.302 20 C 0.321 3.679 21 O -0.352 6.352 22 C -0.193 4.193 23 C -0.194 4.194 24 C 0.319 3.681 25 O -0.348 6.348 26 C -0.031 4.031 27 H 0.066 0.934 28 H 0.220 0.780 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.081 0.919 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.865 -20.726 -5.229 24.948 hybrid contribution -0.088 0.981 0.015 0.985 sum 12.776 -19.745 -5.215 24.089 Atomic orbital electron populations 1.69653 1.05127 1.25904 1.57353 1.24738 0.95509 0.97740 1.02557 0.86262 0.78570 0.83351 0.78012 1.21123 1.21626 1.21165 1.19233 0.91079 0.84001 1.43237 0.91126 1.42367 1.05796 0.99561 1.88068 1.20494 0.94986 0.86518 0.92301 0.93088 1.21821 0.98679 0.94002 1.01936 1.21889 1.01113 0.98369 0.95555 1.21799 0.97157 0.88573 0.94297 1.48245 1.18477 1.11398 1.55381 1.20569 0.81644 0.90278 0.79024 1.90717 1.61521 1.43701 1.45109 1.21657 0.84622 0.97518 1.00781 1.46341 1.09060 1.63488 1.11274 1.20822 0.92379 0.73950 0.80796 1.90782 1.46640 1.44279 1.53516 1.22447 0.91191 1.06629 0.99061 1.22450 0.97348 1.06983 0.92580 1.20831 0.84746 0.73807 0.88681 1.90798 1.85153 1.44079 1.14813 1.22838 0.97785 0.81280 1.01239 0.93391 0.78038 0.91277 0.91952 0.90779 0.91435 0.90909 0.90569 0.86012 0.86100 0.85896 0.86138 0.85918 0.86092 0.91887 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.94 9.93 -15.06 -0.15 -7.08 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.72 -18.06 5.12 -53.31 -0.27 -18.33 16 10 C 0.17 3.39 2.92 -67.81 -0.20 3.20 16 11 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 12 C -0.13 -1.97 5.35 -26.69 -0.14 -2.11 16 13 C -0.13 -1.52 6.08 -26.61 -0.16 -1.68 16 14 C 0.10 1.16 6.34 -3.71 -0.02 1.14 16 15 N -0.60 -9.38 2.97 -172.77 -0.51 -9.89 16 16 C 0.50 8.19 7.77 -10.99 -0.09 8.11 16 17 O -0.53 -11.05 15.85 5.56 0.09 -10.96 16 18 C 0.08 0.93 4.38 -5.19 -0.02 0.90 16 19 N -0.56 -6.45 2.04 -116.63 -0.24 -6.69 16 20 C 0.53 5.76 8.08 -11.09 -0.09 5.67 16 21 O -0.48 -6.81 17.47 5.61 0.10 -6.71 16 22 C -0.15 -0.87 7.03 -26.94 -0.19 -1.06 16 23 C -0.15 -0.89 7.03 -26.94 -0.19 -1.08 16 24 C 0.53 5.87 8.08 -11.08 -0.09 5.78 16 25 O -0.48 -6.99 17.48 5.60 0.10 -6.89 16 26 C 0.09 1.80 6.01 -3.71 -0.02 1.78 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.39 10.15 7.80 -40.82 -0.32 9.83 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 35 H 0.12 1.19 7.38 -51.93 -0.38 0.81 16 36 H 0.12 1.15 7.62 -51.93 -0.40 0.75 16 37 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.12 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.09 2.07 7.01 -51.93 -0.36 1.71 16 LS Contribution 350.75 15.07 5.29 5.29 Total: -1.00 -37.75 350.75 -7.18 -44.93 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.96 Total: 5.67 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -1.46 Total: 13.20 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -0.30 Total: -62.46 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: 0.28 Total: -24.56 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.75 -7.18 -44.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000874968.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.850 kcal (2) G-P(sol) polarization free energy of solvation -37.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds