Wall clock time and date at job start Fri Apr 10 2020 18:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00479 * 2 1 4 4 H 1.48500 * 109.47389 * 240.00149 * 3 2 1 5 5 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47102 * 119.99801 * 3 2 1 7 7 C 1.38811 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99892 * 179.72716 * 9 7 2 11 11 H 1.08997 * 109.50402 * 35.06335 * 10 9 7 12 12 C 1.53045 * 109.49861 * 155.16163 * 10 9 7 13 13 C 1.53036 * 109.53904 * 181.31693 * 12 10 9 14 14 C 1.53197 * 109.31163 * 298.63062 * 13 12 10 15 15 N 1.46926 * 108.77500 * 54.63555 * 14 13 12 16 16 C 1.34771 * 120.62820 * 126.36848 * 15 14 13 17 17 O 1.21281 * 120.00174 * 180.02562 * 16 15 14 18 18 C 1.50699 * 120.00432 * 0.02562 * 16 15 14 19 19 N 1.46503 * 109.47613 * 179.97438 * 18 16 15 20 20 C 1.33876 * 122.76279 * 269.71504 * 19 18 16 21 21 O 1.21222 * 125.39781 * 359.97438 * 20 19 18 22 22 C 1.51310 * 109.20253 * 179.83930 * 20 19 18 23 23 C 1.54228 * 103.56107 * 0.38437 * 22 20 19 24 24 C 1.33874 * 122.75877 * 89.99881 * 19 18 16 25 25 O 1.21227 * 125.39801 * 0.02562 * 24 19 18 26 26 C 1.46928 * 118.74046 * 306.39412 * 15 14 13 27 27 H 0.97004 * 119.99151 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99317 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.45888 * 301.33164 * 12 10 9 30 30 H 1.08992 * 109.45941 * 61.29087 * 12 10 9 31 31 H 1.08998 * 109.49644 * 178.68576 * 13 12 10 32 32 H 1.08995 * 109.52633 * 58.59727 * 13 12 10 33 33 H 1.09003 * 109.58406 * 294.85051 * 14 13 12 34 34 H 1.08996 * 109.58489 * 174.42793 * 14 13 12 35 35 H 1.08996 * 109.47353 * 299.99946 * 18 16 15 36 36 H 1.09002 * 109.46744 * 60.00032 * 18 16 15 37 37 H 1.09006 * 110.79910 * 241.77524 * 22 20 19 38 38 H 1.09004 * 110.41919 * 118.81328 * 22 20 19 39 39 H 1.08996 * 110.61112 * 241.26530 * 23 22 20 40 40 H 1.09001 * 110.74032 * 118.35488 * 23 22 20 41 41 H 1.08999 * 109.58560 * 293.82097 * 26 15 14 42 42 H 1.08997 * 109.70489 * 173.46154 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6568 -0.0082 11 1 2.9703 -3.5533 0.5789 12 6 1.1816 -4.7556 0.5977 13 6 1.9578 -6.0743 0.6214 14 6 2.3158 -6.4773 -0.8126 15 7 3.0341 -5.3657 -1.4508 16 6 4.2363 -5.5653 -2.0262 17 8 4.8194 -4.6395 -2.5494 18 6 4.8562 -6.9389 -2.0195 19 7 6.1516 -6.8935 -2.7024 20 6 6.2858 -7.1101 -4.0167 21 8 5.3809 -7.3635 -4.7825 22 6 7.7454 -6.9853 -4.3952 23 6 8.4402 -6.6653 -3.0560 24 6 7.2992 -6.6374 -2.0624 25 8 7.4074 -6.4183 -0.8750 26 6 2.4170 -4.0323 -1.4493 27 1 -0.4849 0.8401 0.0004 28 1 0.3554 -2.3880 -0.0016 29 1 0.9043 -4.4793 1.6150 30 1 0.2809 -4.8751 -0.0042 31 1 1.3417 -6.8510 1.0744 32 1 2.8712 -5.9491 1.2029 33 1 1.4042 -6.6915 -1.3704 34 1 2.9525 -7.3618 -0.7954 35 1 4.9990 -7.2681 -0.9903 36 1 4.1978 -7.6371 -2.5363 37 1 7.8926 -6.1732 -5.1073 38 1 8.1143 -7.9263 -4.8034 39 1 8.9328 -5.6941 -3.1017 40 1 9.1559 -7.4454 -2.7963 41 1 1.5136 -4.0471 -2.0590 42 1 3.1184 -3.3023 -1.8531 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000874968.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:39 Heat of formation + Delta-G solvation = -108.268923 kcal Electronic energy + Delta-G solvation = -26142.274633 eV Core-core repulsion = 22314.889765 eV Total energy + Delta-G solvation = -3827.384867 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.00831 -41.10671 -39.68560 -38.77332 -36.93446 -36.30381 -34.53929 -33.89645 -32.80151 -30.55524 -28.93790 -27.13091 -26.16786 -25.91617 -23.35601 -23.32392 -22.20891 -20.91108 -19.99670 -19.18626 -18.86789 -18.35196 -17.60880 -17.54797 -16.89370 -16.63570 -16.38089 -15.76174 -15.64546 -15.46542 -15.30474 -15.24324 -14.99275 -14.93682 -14.41396 -14.19622 -14.04635 -13.73715 -13.54714 -13.33773 -13.13370 -12.92729 -12.55878 -12.29196 -12.11837 -12.08924 -11.95440 -11.81021 -11.71990 -11.61214 -11.39952 -11.14634 -11.14180 -10.66758 -9.85454 -9.07616 -8.03120 -5.32823 0.48271 1.21698 1.38156 1.40887 1.43853 1.50119 1.69264 2.02689 2.49782 3.19408 3.24273 3.29072 3.32181 3.62455 3.69543 3.91367 3.95384 3.99375 4.02388 4.11736 4.18320 4.26382 4.27574 4.32792 4.55461 4.69152 4.74761 4.81694 4.83668 4.89664 4.91017 4.98789 5.10485 5.33109 5.36997 5.41054 5.49443 5.72780 6.19493 6.26740 6.27874 6.67409 6.95644 7.26178 7.97647 8.23613 9.19278 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.016241 B = 0.003628 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.610572 B = 7715.621929 C = 8576.706907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.064 4.064 3 Si 0.968 3.032 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.062 0.938 9 N -0.729 5.729 10 C 0.167 3.833 11 H 0.028 0.972 12 C -0.118 4.118 13 C -0.121 4.121 14 C 0.097 3.903 15 N -0.600 5.600 16 C 0.488 3.512 17 O -0.589 6.589 18 C 0.082 3.918 19 N -0.568 5.568 20 C 0.522 3.478 21 O -0.522 6.522 22 C -0.140 4.140 23 C -0.140 4.140 24 C 0.520 3.480 25 O -0.523 6.523 26 C 0.108 3.892 27 H 0.254 0.746 28 H 0.378 0.622 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.135 0.865 38 H 0.159 0.841 39 H 0.133 0.867 40 H 0.159 0.841 41 H 0.060 0.940 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.431 -24.113 -5.461 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.257 4.257 3 Si 0.797 3.203 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.080 0.920 9 N -0.369 5.369 10 C 0.058 3.942 11 H 0.046 0.954 12 C -0.157 4.157 13 C -0.160 4.160 14 C -0.024 4.024 15 N -0.333 5.333 16 C 0.276 3.724 17 O -0.469 6.469 18 C -0.042 4.042 19 N -0.310 5.310 20 C 0.314 3.686 21 O -0.396 6.396 22 C -0.178 4.178 23 C -0.179 4.179 24 C 0.312 3.688 25 O -0.397 6.397 26 C -0.018 4.018 27 H 0.063 0.937 28 H 0.211 0.789 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.136 0.864 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.153 0.847 38 H 0.177 0.823 39 H 0.151 0.849 40 H 0.177 0.823 41 H 0.078 0.922 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.408 -23.520 -5.473 28.120 hybrid contribution -0.557 1.775 0.090 1.862 sum 13.852 -21.745 -5.383 26.338 Atomic orbital electron populations 1.69781 1.06306 1.26374 1.58755 1.25481 0.96406 1.00783 1.03072 0.85302 0.77433 0.79542 0.78044 1.21053 1.21222 1.20323 1.19465 0.90940 0.85610 1.42278 0.92008 1.42493 1.05528 1.00559 1.88313 1.20649 0.94660 0.86298 0.92627 0.95385 1.21742 0.98490 0.94411 1.01015 1.21884 1.00978 0.96905 0.96214 1.22233 0.98438 0.88103 0.93595 1.48305 1.18672 1.10891 1.55467 1.21527 0.81300 0.91761 0.77801 1.90681 1.62932 1.45889 1.47433 1.21738 0.85461 0.94339 1.02709 1.46651 1.09122 1.63301 1.11943 1.21785 0.94285 0.72455 0.80072 1.90757 1.48415 1.46226 1.54211 1.22594 0.87034 1.09023 0.99190 1.22597 0.95851 1.08918 0.90554 1.21822 0.85880 0.72219 0.88860 1.90770 1.85842 1.46144 1.16917 1.22231 0.96518 0.82974 1.00046 0.93681 0.78907 0.91918 0.91259 0.86570 0.91896 0.89075 0.86351 0.83828 0.83541 0.84718 0.82290 0.84866 0.82298 0.92204 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.74 13.06 21.65 0.28 -59.46 16 2 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.97 48.25 29.55 68.60 2.03 50.28 16 4 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 7 C -0.25 -14.81 9.93 84.03 0.83 -13.97 16 8 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 9 N -0.73 -38.23 5.12 -322.57 -1.65 -39.89 16 10 C 0.17 7.00 2.92 45.07 0.13 7.13 16 11 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 12 C -0.12 -3.61 5.35 30.62 0.16 -3.44 16 13 C -0.12 -2.48 6.08 30.67 0.19 -2.29 16 14 C 0.10 1.87 6.34 86.36 0.55 2.41 16 15 N -0.60 -18.63 2.97 -818.90 -2.43 -21.07 16 16 C 0.49 16.14 7.77 87.66 0.68 16.82 16 17 O -0.59 -25.53 15.85 -3.03 -0.05 -25.58 16 18 C 0.08 1.80 4.38 85.63 0.38 2.18 16 19 N -0.57 -12.36 2.04 -760.73 -1.55 -13.92 16 20 C 0.52 10.47 8.08 87.99 0.71 11.18 16 21 O -0.52 -14.33 17.47 -2.85 -0.05 -14.38 16 22 C -0.14 -1.10 7.03 30.46 0.21 -0.89 16 23 C -0.14 -1.16 7.03 30.46 0.21 -0.94 16 24 C 0.52 10.79 8.08 87.99 0.71 11.50 16 25 O -0.52 -15.05 17.48 -2.86 -0.05 -15.10 16 26 C 0.11 4.40 6.01 86.36 0.52 4.92 16 27 H 0.25 15.26 8.31 -92.71 -0.77 14.48 16 28 H 0.38 20.66 7.80 -92.71 -0.72 19.94 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.12 1.34 5.93 -2.39 -0.01 1.33 16 35 H 0.14 2.47 7.38 -2.39 -0.02 2.45 16 36 H 0.15 2.41 7.62 -2.39 -0.02 2.39 16 37 H 0.13 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.16 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.16 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.04 2.18 7.01 -2.39 -0.02 2.16 16 Total: -1.00 -89.33 350.75 2.60 -86.73 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.32 Total: 21.15 kcal Atomic # 6 Polarization: 25.48 SS G_CDS: 5.76 Total: 31.23 kcal Atomic # 7 Polarization: -128.97 SS G_CDS: -5.36 Total: -134.33 kcal Atomic # 8 Polarization: -54.91 SS G_CDS: -0.15 Total: -55.06 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -89.33 2.60 -86.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000874968.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.542 kcal (2) G-P(sol) polarization free energy of solvation -89.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds