Wall clock time and date at job start Fri Apr 10 2020 18:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99928 * 2 1 4 4 H 1.48497 * 109.47147 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47107 * 300.00158 * 3 2 1 6 6 H 1.48500 * 109.47178 * 60.00229 * 3 2 1 7 7 C 1.38814 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00124 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00322 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00250 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.49753 * 325.06033 * 10 9 7 12 12 C 1.53042 * 109.50056 * 85.16305 * 10 9 7 13 13 C 1.53040 * 109.53871 * 181.31705 * 12 10 9 14 14 C 1.53627 * 109.24108 * 298.50936 * 13 12 10 15 15 N 1.46927 * 108.54183 * 54.85576 * 14 13 12 16 16 C 1.34777 * 120.62638 * 126.37295 * 15 14 13 17 17 O 1.21278 * 119.99854 * 179.72148 * 16 15 14 18 18 C 1.50703 * 120.00161 * 359.71455 * 16 15 14 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 20 20 H 1.09005 * 110.54157 * 303.59951 * 19 18 16 21 21 C 1.54234 * 110.60350 * 180.59012 * 19 18 16 22 22 C 1.51313 * 103.55217 * 241.47939 * 21 19 18 23 23 O 1.21228 * 125.39243 * 180.02562 * 22 21 19 24 24 N 1.33871 * 109.20732 * 0.02562 * 22 21 19 25 25 C 1.33877 * 114.47902 * 359.97438 * 24 22 21 26 26 O 1.21222 * 125.39712 * 180.02562 * 25 24 22 27 27 C 1.46920 * 118.74032 * 306.09058 * 15 14 13 28 28 H 0.97000 * 120.00165 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99656 * 0.02562 * 9 7 2 30 30 H 1.08995 * 109.45388 * 301.33487 * 12 10 9 31 31 H 1.08999 * 109.45952 * 61.29363 * 12 10 9 32 32 H 1.08999 * 109.49509 * 58.58265 * 13 12 10 33 33 H 1.08997 * 109.49597 * 178.64672 * 13 12 10 34 34 H 1.09005 * 109.73796 * 295.11763 * 14 13 12 35 35 H 1.08995 * 109.66320 * 174.54985 * 14 13 12 36 36 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 37 37 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 38 38 H 1.09003 * 110.60393 * 0.02562 * 21 19 18 39 39 H 1.09004 * 110.60333 * 122.96296 * 21 19 18 40 40 H 0.97003 * 122.75879 * 179.97438 * 24 22 21 41 41 H 1.09001 * 109.58920 * 173.64838 * 27 15 14 42 42 H 1.08997 * 109.58981 * 294.07819 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9695 -3.5507 -0.5890 12 6 2.4190 -4.0384 1.4370 13 6 3.2127 -5.3468 1.4353 14 6 2.3430 -6.4658 0.8422 15 7 1.8769 -6.0415 -0.4850 16 6 2.0794 -6.8212 -1.5655 17 8 1.6854 -6.4621 -2.6548 18 6 2.7956 -8.1392 -1.4201 19 6 2.8930 -8.8201 -2.7868 20 1 1.9021 -8.9435 -3.2241 21 6 3.6097 -10.1804 -2.6656 22 6 4.8356 -10.0141 -3.5368 23 8 5.6837 -10.8599 -3.7243 24 7 4.8354 -8.7851 -4.0676 25 6 3.7895 -8.0281 -3.7133 26 8 3.5920 -6.8889 -4.0774 27 6 1.1803 -4.7540 -0.6108 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 3.0232 -3.2477 1.8817 31 1 1.5061 -4.1681 2.0182 32 1 4.1134 -5.2251 0.8337 33 1 3.4899 -5.6054 2.4572 34 1 1.4853 -6.6478 1.4898 35 1 2.9326 -7.3777 0.7481 36 1 2.2422 -8.7796 -0.7333 37 1 3.7980 -7.9667 -1.0282 38 1 3.8964 -10.3721 -1.6316 39 1 2.9762 -10.9828 -3.0438 40 1 5.5354 -8.4691 -4.6601 41 1 1.0025 -4.5361 -1.6639 42 1 0.2298 -4.7993 -0.0794 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001090245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:46 Heat of formation + Delta-G solvation = -88.455459 kcal Electronic energy + Delta-G solvation = -25919.103581 eV Core-core repulsion = 22092.577890 eV Total energy + Delta-G solvation = -3826.525691 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.13518 -39.97457 -38.77245 -37.30611 -36.12700 -34.49987 -33.86319 -32.19184 -31.24878 -29.48008 -28.03560 -25.74779 -24.75795 -23.67134 -22.10691 -22.05880 -21.24649 -19.96443 -18.86794 -18.16590 -17.19000 -17.16205 -16.94340 -16.44236 -15.71504 -15.52781 -14.98808 -14.71092 -14.35424 -14.18006 -14.06646 -13.99062 -13.65419 -13.49443 -13.26801 -12.98011 -12.80611 -12.66820 -12.29132 -12.15037 -11.71235 -11.09138 -10.99730 -10.93173 -10.91287 -10.66641 -10.55432 -10.41673 -10.35251 -10.19253 -10.03234 -9.73665 -9.54821 -8.91448 -8.37432 -6.98337 -5.77551 -3.06940 1.23332 2.44227 2.48125 2.74923 3.04673 3.43485 3.49416 3.51387 3.69979 3.84691 3.96265 4.25171 4.55982 4.58886 4.74279 4.89736 4.90484 5.06483 5.10657 5.17400 5.27545 5.42127 5.50230 5.56985 5.66853 5.69675 5.74971 5.81230 6.01874 6.16806 6.23895 6.34600 6.38448 6.54598 6.69925 6.88182 7.01930 7.04880 7.57321 7.62568 7.70313 8.32604 8.40793 9.51828 10.07202 10.42174 11.45055 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.022416 B = 0.003045 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.827528 B = 9194.150758 C = 9652.985166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.168 3.832 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.134 4.134 14 C 0.107 3.893 15 N -0.607 5.607 16 C 0.501 3.499 17 O -0.512 6.512 18 C -0.127 4.127 19 C -0.109 4.109 20 H 0.133 0.867 21 C -0.155 4.155 22 C 0.531 3.469 23 O -0.492 6.492 24 N -0.685 5.685 25 C 0.519 3.481 26 O -0.433 6.433 27 C 0.108 3.892 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.414 0.586 41 H 0.093 0.907 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.410 -24.149 0.131 24.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.362 5.362 10 C 0.057 3.943 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.173 4.173 14 C -0.016 4.016 15 N -0.342 5.342 16 C 0.288 3.712 17 O -0.387 6.387 18 C -0.167 4.167 19 C -0.131 4.131 20 H 0.151 0.849 21 C -0.195 4.195 22 C 0.319 3.681 23 O -0.364 6.364 24 N -0.352 5.352 25 C 0.305 3.695 26 O -0.298 6.298 27 C -0.015 4.015 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.253 0.747 41 H 0.111 0.889 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.501 -23.639 -0.681 24.526 hybrid contribution 0.560 1.162 -0.074 1.292 sum 7.061 -22.477 -0.755 23.572 Atomic orbital electron populations 1.69670 1.05097 1.25600 1.57630 1.24746 0.95529 0.97701 1.02894 0.86119 0.78794 0.84108 0.77182 1.20563 1.21817 1.21872 1.19250 0.90990 0.83899 1.42720 0.91143 1.42313 1.05801 0.99553 1.88540 1.20477 0.94709 0.86034 0.93060 0.93285 1.22280 0.99568 0.95225 1.00707 1.22013 0.98781 0.96110 1.00377 1.21855 0.98334 0.97436 0.83941 1.48076 1.58040 1.20639 1.07407 1.20329 0.80718 0.85831 0.84350 1.90818 1.49770 1.73087 1.25012 1.21650 1.03009 0.95854 0.96235 1.21844 1.01798 0.93273 0.96201 0.84938 1.22601 0.95287 0.98757 1.02831 1.20750 0.87285 0.80704 0.79385 1.90817 1.41102 1.44214 1.60283 1.44896 1.26701 1.16462 1.47142 1.20701 0.81333 0.86320 0.81190 1.90958 1.71548 1.15130 1.52209 1.21976 0.94825 0.81298 1.03365 0.93519 0.78207 0.91626 0.92466 0.91940 0.91406 0.91253 0.90484 0.87025 0.88445 0.85867 0.85782 0.74663 0.88850 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.72 -18.04 5.12 -53.31 -0.27 -18.32 16 10 C 0.17 3.34 2.92 -67.81 -0.20 3.14 16 11 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 12 C -0.14 -2.27 5.46 -26.69 -0.15 -2.42 16 13 C -0.13 -1.58 6.10 -26.39 -0.16 -1.74 16 14 C 0.11 1.06 6.37 -3.48 -0.02 1.04 16 15 N -0.61 -8.22 2.97 -172.50 -0.51 -8.73 16 16 C 0.50 6.67 7.37 -10.98 -0.08 6.59 16 17 O -0.51 -9.11 12.98 -17.45 -0.23 -9.34 16 18 C -0.13 -0.92 3.38 -27.88 -0.09 -1.02 16 19 C -0.11 -0.77 2.72 -90.83 -0.25 -1.02 16 20 H 0.13 0.92 8.03 -51.93 -0.42 0.51 16 21 C -0.16 -0.64 6.67 -26.94 -0.18 -0.82 16 22 C 0.53 4.06 8.55 -11.09 -0.09 3.96 16 23 O -0.49 -5.39 18.02 5.60 0.10 -5.29 16 24 N -0.69 -5.58 5.48 -11.40 -0.06 -5.65 16 25 C 0.52 5.52 7.71 -11.09 -0.09 5.43 16 26 O -0.43 -6.93 15.42 -17.40 -0.27 -7.20 16 27 C 0.11 1.89 5.90 -3.71 -0.02 1.86 16 28 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 29 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.49 5.93 -51.93 -0.31 0.18 16 36 H 0.11 0.43 7.93 -51.93 -0.41 0.02 16 37 H 0.10 0.59 7.70 -51.93 -0.40 0.19 16 38 H 0.12 0.25 7.74 -51.93 -0.40 -0.16 16 39 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.41 2.98 8.96 -40.82 -0.37 2.61 16 41 H 0.09 1.89 7.01 -51.93 -0.36 1.53 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -37.17 344.83 -7.83 -45.00 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.91 Total: 6.47 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -1.58 Total: 7.78 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.12 Total: -60.16 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.39 Total: -21.82 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.17 -7.83 -45.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001090245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.456 kcal (2) G-P(sol) polarization free energy of solvation -37.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds