Wall clock time and date at job start Fri Apr 10 2020 18:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99928 * 2 1 4 4 H 1.48497 * 109.47147 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47107 * 300.00158 * 3 2 1 6 6 H 1.48500 * 109.47178 * 60.00229 * 3 2 1 7 7 C 1.38814 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00124 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00322 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00250 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.49753 * 325.06033 * 10 9 7 12 12 C 1.53042 * 109.50056 * 85.16305 * 10 9 7 13 13 C 1.53040 * 109.53871 * 181.31705 * 12 10 9 14 14 C 1.53627 * 109.24108 * 298.50936 * 13 12 10 15 15 N 1.46927 * 108.54183 * 54.85576 * 14 13 12 16 16 C 1.34777 * 120.62638 * 126.37295 * 15 14 13 17 17 O 1.21278 * 119.99854 * 179.72148 * 16 15 14 18 18 C 1.50703 * 120.00161 * 359.71455 * 16 15 14 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 20 20 H 1.09005 * 110.54157 * 303.59951 * 19 18 16 21 21 C 1.54234 * 110.60350 * 180.59012 * 19 18 16 22 22 C 1.51313 * 103.55217 * 241.47939 * 21 19 18 23 23 O 1.21228 * 125.39243 * 180.02562 * 22 21 19 24 24 N 1.33871 * 109.20732 * 0.02562 * 22 21 19 25 25 C 1.33877 * 114.47902 * 359.97438 * 24 22 21 26 26 O 1.21222 * 125.39712 * 180.02562 * 25 24 22 27 27 C 1.46920 * 118.74032 * 306.09058 * 15 14 13 28 28 H 0.97000 * 120.00165 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99656 * 0.02562 * 9 7 2 30 30 H 1.08995 * 109.45388 * 301.33487 * 12 10 9 31 31 H 1.08999 * 109.45952 * 61.29363 * 12 10 9 32 32 H 1.08999 * 109.49509 * 58.58265 * 13 12 10 33 33 H 1.08997 * 109.49597 * 178.64672 * 13 12 10 34 34 H 1.09005 * 109.73796 * 295.11763 * 14 13 12 35 35 H 1.08995 * 109.66320 * 174.54985 * 14 13 12 36 36 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 37 37 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 38 38 H 1.09003 * 110.60393 * 0.02562 * 21 19 18 39 39 H 1.09004 * 110.60333 * 122.96296 * 21 19 18 40 40 H 0.97003 * 122.75879 * 179.97438 * 24 22 21 41 41 H 1.09001 * 109.58920 * 173.64838 * 27 15 14 42 42 H 1.08997 * 109.58981 * 294.07819 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9695 -3.5507 -0.5890 12 6 2.4190 -4.0384 1.4370 13 6 3.2127 -5.3468 1.4353 14 6 2.3430 -6.4658 0.8422 15 7 1.8769 -6.0415 -0.4850 16 6 2.0794 -6.8212 -1.5655 17 8 1.6854 -6.4621 -2.6548 18 6 2.7956 -8.1392 -1.4201 19 6 2.8930 -8.8201 -2.7868 20 1 1.9021 -8.9435 -3.2241 21 6 3.6097 -10.1804 -2.6656 22 6 4.8356 -10.0141 -3.5368 23 8 5.6837 -10.8599 -3.7243 24 7 4.8354 -8.7851 -4.0676 25 6 3.7895 -8.0281 -3.7133 26 8 3.5920 -6.8889 -4.0774 27 6 1.1803 -4.7540 -0.6108 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 3.0232 -3.2477 1.8817 31 1 1.5061 -4.1681 2.0182 32 1 4.1134 -5.2251 0.8337 33 1 3.4899 -5.6054 2.4572 34 1 1.4853 -6.6478 1.4898 35 1 2.9326 -7.3777 0.7481 36 1 2.2422 -8.7796 -0.7333 37 1 3.7980 -7.9667 -1.0282 38 1 3.8964 -10.3721 -1.6316 39 1 2.9762 -10.9828 -3.0438 40 1 5.5354 -8.4691 -4.6601 41 1 1.0025 -4.5361 -1.6639 42 1 0.2298 -4.7993 -0.0794 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001090245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:45 Heat of formation + Delta-G solvation = -117.676068 kcal Electronic energy + Delta-G solvation = -25920.370682 eV Core-core repulsion = 22092.577890 eV Total energy + Delta-G solvation = -3827.792792 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.82090 -41.02124 -39.62072 -38.57335 -36.93320 -36.16371 -34.56720 -33.75823 -32.68489 -30.61695 -29.22824 -26.62449 -26.07406 -25.26722 -23.34039 -22.68435 -22.10368 -21.19408 -19.95586 -19.14574 -18.90704 -18.03987 -17.75238 -17.21902 -16.81840 -16.57425 -16.37556 -15.88688 -15.45934 -15.37215 -15.12482 -15.09131 -14.86461 -14.72573 -14.49086 -13.92234 -13.79624 -13.62046 -13.42302 -12.99104 -12.93160 -12.82193 -12.33952 -12.25578 -12.11691 -12.02600 -11.82094 -11.70910 -11.66414 -11.56714 -11.35736 -10.98681 -10.93467 -10.61874 -9.55050 -9.03698 -7.98372 -5.27620 0.53716 1.43283 1.45191 1.54627 1.77056 1.78530 1.86078 2.06471 2.53934 3.17837 3.26441 3.34596 3.39950 3.72201 3.81773 3.87459 4.04441 4.17452 4.18176 4.31871 4.37908 4.39935 4.59813 4.63079 4.70145 4.84180 4.86948 4.89136 4.92767 4.97514 5.07723 5.10547 5.19984 5.42011 5.44430 5.57072 5.62710 5.70201 6.24066 6.36900 6.58581 6.91622 7.29404 7.34956 8.03173 8.27242 9.25186 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.022416 B = 0.003045 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.827528 B = 9194.150758 C = 9652.985166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.736 5.736 10 C 0.166 3.834 11 H 0.022 0.978 12 C -0.128 4.128 13 C -0.127 4.127 14 C 0.105 3.895 15 N -0.610 5.610 16 C 0.489 3.511 17 O -0.567 6.567 18 C -0.118 4.118 19 C -0.104 4.104 20 H 0.134 0.866 21 C -0.132 4.132 22 C 0.532 3.468 23 O -0.525 6.525 24 N -0.684 5.684 25 C 0.516 3.484 26 O -0.501 6.501 27 C 0.122 3.878 28 H 0.252 0.748 29 H 0.373 0.627 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.131 0.869 36 H 0.166 0.834 37 H 0.121 0.879 38 H 0.162 0.838 39 H 0.154 0.846 40 H 0.413 0.587 41 H 0.053 0.947 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.544 -27.748 2.412 28.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.215 1.215 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.057 3.943 11 H 0.040 0.960 12 C -0.168 4.168 13 C -0.165 4.165 14 C -0.016 4.016 15 N -0.344 5.344 16 C 0.279 3.721 17 O -0.446 6.446 18 C -0.157 4.157 19 C -0.126 4.126 20 H 0.152 0.848 21 C -0.171 4.171 22 C 0.323 3.677 23 O -0.400 6.400 24 N -0.349 5.349 25 C 0.304 3.696 26 O -0.371 6.371 27 C -0.003 4.003 28 H 0.061 0.939 29 H 0.205 0.795 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.148 0.852 36 H 0.184 0.816 37 H 0.139 0.861 38 H 0.180 0.820 39 H 0.172 0.828 40 H 0.251 0.749 41 H 0.071 0.929 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.694 -27.330 1.640 28.440 hybrid contribution 0.260 2.227 -0.853 2.399 sum 7.954 -25.103 0.787 26.345 Atomic orbital electron populations 1.69818 1.06524 1.26050 1.59450 1.25553 0.96433 1.01019 1.03676 0.85091 0.78130 0.79861 0.76791 1.19276 1.22206 1.21489 1.19559 0.91158 0.85206 1.41157 0.91202 1.42505 1.05461 1.00848 1.88854 1.20653 0.93459 0.84974 0.95231 0.96019 1.22064 1.00023 0.97561 0.97163 1.21992 0.97984 0.93837 1.02733 1.22223 0.99352 0.98296 0.81762 1.48200 1.57751 1.18870 1.09551 1.21553 0.79922 0.87545 0.83124 1.90811 1.51902 1.74647 1.27191 1.21824 1.03972 0.92596 0.97348 1.21910 1.01309 0.94091 0.95246 0.84787 1.22700 0.92877 0.97296 1.04180 1.21397 0.87828 0.79524 0.78998 1.90815 1.42730 1.44909 1.61569 1.45003 1.26231 1.16841 1.46838 1.21447 0.81767 0.85634 0.80759 1.90937 1.73156 1.18184 1.54833 1.21443 0.95036 0.83269 1.00530 0.93925 0.79477 0.94139 0.92343 0.92515 0.87886 0.89428 0.85162 0.81633 0.86063 0.81995 0.82798 0.74867 0.92854 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.54 13.06 21.65 0.28 -60.26 16 2 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 3 Si 0.97 47.50 29.55 68.60 2.03 49.53 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.24 -13.78 9.93 84.03 0.83 -12.95 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.74 -38.65 5.12 -322.57 -1.65 -40.30 16 10 C 0.17 6.84 2.92 45.07 0.13 6.97 16 11 H 0.02 1.00 8.08 -2.39 -0.02 0.98 16 12 C -0.13 -4.18 5.46 30.62 0.17 -4.01 16 13 C -0.13 -2.56 6.10 30.82 0.19 -2.38 16 14 C 0.10 1.56 6.37 86.51 0.55 2.11 16 15 N -0.61 -15.42 2.97 -818.06 -2.43 -17.84 16 16 C 0.49 12.16 7.37 87.66 0.65 12.80 16 17 O -0.57 -20.78 12.98 18.97 0.25 -20.53 16 18 C -0.12 -1.11 3.38 29.85 0.10 -1.00 16 19 C -0.10 -1.09 2.72 -10.93 -0.03 -1.12 16 20 H 0.13 1.47 8.03 -2.38 -0.02 1.45 16 21 C -0.13 -0.36 6.67 30.46 0.20 -0.16 16 22 C 0.53 6.61 8.55 87.99 0.75 7.36 16 23 O -0.53 -10.35 18.02 -2.87 -0.05 -10.40 16 24 N -0.68 -10.46 5.48 -427.81 -2.34 -12.81 16 25 C 0.52 10.62 7.71 87.99 0.68 11.29 16 26 O -0.50 -16.89 15.42 19.15 0.30 -16.60 16 27 C 0.12 4.40 5.90 86.37 0.51 4.91 16 28 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 29 H 0.37 20.84 7.80 -92.71 -0.72 20.12 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.13 0.64 5.93 -2.39 -0.01 0.63 16 36 H 0.17 -0.11 7.93 -2.39 -0.02 -0.13 16 37 H 0.12 0.67 7.70 -2.39 -0.02 0.66 16 38 H 0.16 -0.65 7.74 -2.39 -0.02 -0.66 16 39 H 0.15 -0.30 8.14 -2.39 -0.02 -0.32 16 40 H 0.41 6.06 8.96 -92.71 -0.83 5.22 16 41 H 0.05 2.34 7.01 -2.39 -0.02 2.32 16 42 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -90.96 344.83 1.09 -89.87 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -0.49 Total: 19.45 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 5.20 Total: 19.89 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -6.14 Total: -131.21 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: 0.49 Total: -47.53 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -90.96 1.09 -89.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001090245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.808 kcal (2) G-P(sol) polarization free energy of solvation -90.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds