Wall clock time and date at job start Fri Apr 10 2020 18:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47165 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47155 * 239.99836 * 3 2 1 6 6 H 1.48506 * 109.46826 * 120.00178 * 3 2 1 7 7 C 1.38810 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00100 * 204.34176 * 7 2 1 9 9 N 1.36940 * 120.00019 * 24.34685 * 7 2 1 10 10 C 1.46931 * 120.62955 * 29.01976 * 9 7 2 11 11 C 1.53630 * 108.54020 * 126.37085 * 10 9 7 12 12 C 1.53040 * 109.24096 * 54.85674 * 11 10 9 13 13 N 1.46498 * 109.46365 * 178.49134 * 12 11 10 14 14 C 1.34783 * 119.99648 * 275.07226 * 13 12 11 15 15 O 1.21277 * 120.00036 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.52994 * 109.46946 * 179.97438 * 16 14 13 18 18 H 1.08997 * 110.54444 * 54.30077 * 17 16 14 19 19 C 1.54236 * 110.60431 * 177.14305 * 17 16 14 20 20 C 1.51680 * 103.38147 * 118.47972 * 19 17 16 21 21 O 1.21224 * 125.35885 * 180.02562 * 20 19 17 22 22 N 1.33875 * 109.23930 * 0.12426 * 20 19 17 23 23 C 1.33871 * 114.47598 * 359.91584 * 22 20 19 24 24 O 1.21230 * 125.39533 * 180.02562 * 23 22 20 25 25 C 1.53041 * 109.53848 * 298.51216 * 12 11 10 26 26 C 1.46927 * 120.63079 * 209.30756 * 9 7 2 27 27 H 0.96995 * 120.00246 * 185.77787 * 1 2 3 28 28 H 1.08990 * 109.58604 * 246.20225 * 10 9 7 29 29 H 1.09003 * 109.58604 * 6.63289 * 10 9 7 30 30 H 1.09003 * 109.63284 * 294.86742 * 11 10 9 31 31 H 1.08999 * 109.45583 * 174.73857 * 11 10 9 32 32 H 1.09001 * 109.46190 * 58.53016 * 12 11 10 33 33 H 0.96997 * 120.00106 * 95.06473 * 13 12 11 34 34 H 1.09006 * 109.46587 * 299.99776 * 16 14 13 35 35 H 1.09001 * 109.47445 * 59.99342 * 16 14 13 36 36 H 1.08996 * 110.60454 * 237.03486 * 19 17 16 37 37 H 1.08999 * 110.60601 * 359.97438 * 19 17 16 38 38 H 0.96998 * 122.75742 * 179.97438 * 22 20 19 39 39 H 1.09002 * 109.50003 * 301.41194 * 25 12 11 40 40 H 1.09001 * 109.52671 * 181.33015 * 25 12 11 41 41 H 1.09000 * 109.58078 * 353.36597 * 26 9 7 42 42 H 1.08998 * 109.58919 * 113.79487 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0182 -1.2436 0.3861 9 7 1.4169 -2.3356 -0.4879 10 6 0.3966 -2.2517 -1.5419 11 6 0.8145 -3.1699 -2.7005 12 6 1.0488 -4.5839 -2.1640 13 7 1.4126 -5.4719 -3.2710 14 6 0.4494 -6.0513 -4.0146 15 8 -0.7186 -5.8379 -3.7671 16 6 0.8236 -6.9643 -5.1537 17 6 -0.4469 -7.4852 -5.8283 18 1 -1.0877 -6.6564 -6.1290 19 6 -0.0937 -8.3667 -7.0437 20 6 -0.6756 -9.7188 -6.6776 21 8 -0.6215 -10.7154 -7.3656 22 7 -1.2601 -9.6368 -5.4759 23 6 -1.1912 -8.4269 -4.9071 24 8 -1.6519 -8.1325 -3.8250 25 6 2.1821 -4.5601 -1.1359 26 6 1.7838 -3.6581 0.0365 27 1 -0.4850 -0.8357 0.0846 28 1 -0.5659 -2.5744 -1.1452 29 1 0.3218 -1.2239 -1.8971 30 1 1.7332 -2.7951 -3.1517 31 1 0.0234 -3.1916 -3.4500 32 1 0.1370 -4.9486 -1.6909 33 1 2.3467 -5.6428 -3.4687 34 1 1.4212 -6.4130 -5.8798 35 1 1.4021 -7.8050 -4.7706 36 1 -0.5611 -7.9779 -7.9483 37 1 0.9871 -8.4337 -7.1679 38 1 -1.6967 -10.3921 -5.0520 39 1 3.0880 -4.1723 -1.6019 40 1 2.3647 -5.5710 -0.7714 41 1 2.6246 -3.5585 0.7230 42 1 0.9320 -4.0931 0.5593 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004283625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:58 Heat of formation + Delta-G solvation = -117.726952 kcal Electronic energy + Delta-G solvation = -25700.796202 eV Core-core repulsion = 21873.001204 eV Total energy + Delta-G solvation = -3827.794998 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.82886 -40.86156 -39.66173 -39.01834 -36.96350 -36.15969 -34.53967 -33.92097 -31.91938 -31.21597 -29.47105 -26.89859 -25.96035 -24.10134 -23.70738 -22.67915 -22.00273 -21.24682 -20.73262 -19.47041 -18.93741 -18.11603 -17.56370 -17.34486 -16.90855 -16.49628 -16.14929 -15.93025 -15.69813 -15.37673 -15.23545 -15.14570 -14.94931 -14.77396 -14.40689 -14.13327 -13.86699 -13.53526 -13.48475 -13.08451 -12.83563 -12.57703 -12.42356 -12.18781 -12.09430 -11.94649 -11.80061 -11.68256 -11.62401 -11.39230 -11.28819 -11.01443 -10.69866 -10.48276 -9.94737 -8.96650 -8.25585 -5.43462 0.49753 1.59341 1.67238 1.73968 1.79769 1.82845 1.86005 2.23325 2.66798 3.16358 3.21809 3.24051 3.42197 3.52456 3.71189 3.79431 3.97301 4.06126 4.25032 4.33074 4.35868 4.50060 4.57446 4.65806 4.67467 4.78680 4.84805 4.92433 4.97156 4.99037 5.02311 5.05751 5.15625 5.15831 5.42053 5.59951 5.65811 5.84603 6.32300 6.36445 6.70709 6.88185 7.03495 7.45295 7.75830 8.21589 8.98943 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.037564 B = 0.002594 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.205887 B =10791.388328 C =10828.855861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.080 4.080 3 Si 1.118 2.882 4 H -0.295 1.295 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.354 4.354 8 H 0.058 0.942 9 N -0.616 5.616 10 C 0.161 3.839 11 C -0.122 4.122 12 C 0.164 3.836 13 N -0.715 5.715 14 C 0.490 3.510 15 O -0.566 6.566 16 C -0.117 4.117 17 C -0.106 4.106 18 H 0.130 0.870 19 C -0.133 4.133 20 C 0.532 3.468 21 O -0.524 6.524 22 N -0.682 5.682 23 C 0.521 3.479 24 O -0.501 6.501 25 C -0.120 4.120 26 C 0.141 3.859 27 H 0.251 0.749 28 H -0.009 1.009 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.416 0.584 34 H 0.160 0.840 35 H 0.123 0.877 36 H 0.151 0.849 37 H 0.160 0.840 38 H 0.414 0.586 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.829 -18.620 -17.177 26.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.276 4.276 3 Si 0.942 3.058 4 H -0.222 1.222 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.484 4.484 8 H 0.076 0.924 9 N -0.341 5.341 10 C 0.035 3.965 11 C -0.162 4.162 12 C 0.058 3.942 13 N -0.367 5.367 14 C 0.277 3.723 15 O -0.444 6.444 16 C -0.157 4.157 17 C -0.128 4.128 18 H 0.148 0.852 19 C -0.172 4.172 20 C 0.323 3.677 21 O -0.399 6.399 22 N -0.347 5.347 23 C 0.309 3.691 24 O -0.371 6.371 25 C -0.159 4.159 26 C 0.015 3.985 27 H 0.061 0.939 28 H 0.009 0.991 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.253 0.747 34 H 0.177 0.823 35 H 0.141 0.859 36 H 0.169 0.831 37 H 0.178 0.822 38 H 0.253 0.747 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 5.714 -17.055 -16.902 24.682 hybrid contribution -0.576 -2.010 1.007 2.321 sum 5.138 -19.065 -15.895 25.348 Atomic orbital electron populations 1.70907 1.07813 1.29289 1.50742 1.27356 0.96543 1.05265 0.98447 0.82831 0.73768 0.71711 0.77513 1.22169 1.20121 1.19929 1.20262 0.97085 0.89326 1.41720 0.92445 1.44418 1.46798 1.02500 1.40411 1.20784 0.89568 0.97757 0.88426 1.22247 1.00917 0.95555 0.97516 1.20494 0.97722 0.88651 0.87297 1.45968 1.10458 1.47725 1.32598 1.21478 0.85425 0.81059 0.84295 1.90818 1.20414 1.62735 1.70424 1.21738 0.97362 1.00240 0.96356 1.21891 0.98113 0.98778 0.94040 0.85190 1.22758 1.07159 0.88052 0.99181 1.21441 0.75501 0.91768 0.79020 1.90816 1.57627 1.37256 1.54203 1.44942 1.53436 1.14878 1.21431 1.21329 0.78404 0.83312 0.86095 1.90910 1.45614 1.78779 1.21812 1.22093 0.97621 1.00297 0.95928 1.21041 0.97444 0.85276 0.94692 0.93930 0.99059 0.93605 0.91442 0.92992 0.93395 0.74706 0.82285 0.85879 0.83116 0.82209 0.74680 0.90370 0.89345 0.91869 0.97594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.36 12.45 21.65 0.27 -59.09 16 2 C -0.08 -4.62 4.69 84.86 0.40 -4.22 16 3 Si 1.12 50.77 29.98 68.60 2.06 52.83 16 4 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.35 -19.80 9.48 84.03 0.80 -19.00 16 8 H 0.06 3.14 7.94 -2.91 -0.02 3.11 16 9 N -0.62 -31.29 2.83 -698.24 -1.98 -33.26 16 10 C 0.16 8.02 4.72 86.51 0.41 8.43 16 11 C -0.12 -4.69 5.67 30.82 0.17 -4.51 16 12 C 0.16 5.34 2.41 45.02 0.11 5.45 16 13 N -0.71 -15.83 5.08 -442.40 -2.25 -18.08 16 14 C 0.49 11.24 7.47 87.66 0.66 11.89 16 15 O -0.57 -19.72 13.42 18.26 0.25 -19.48 16 16 C -0.12 -1.02 5.02 29.85 0.15 -0.87 16 17 C -0.11 -1.11 2.69 -10.93 -0.03 -1.14 16 18 H 0.13 1.56 7.96 -2.39 -0.02 1.54 16 19 C -0.13 -0.42 6.70 30.58 0.20 -0.22 16 20 C 0.53 6.36 8.56 88.11 0.75 7.12 16 21 O -0.52 -10.12 18.02 -2.86 -0.05 -10.17 16 22 N -0.68 -9.52 5.48 -427.43 -2.34 -11.86 16 23 C 0.52 9.92 7.72 87.99 0.68 10.60 16 24 O -0.50 -15.57 15.65 18.40 0.29 -15.28 16 25 C -0.12 -3.65 5.55 30.67 0.17 -3.48 16 26 C 0.14 5.82 6.51 86.36 0.56 6.38 16 27 H 0.25 16.28 6.71 -92.71 -0.62 15.66 16 28 H -0.01 -0.46 7.85 -2.39 -0.02 -0.48 16 29 H 0.05 2.56 6.38 -2.39 -0.02 2.55 16 30 H 0.07 2.46 8.14 -2.39 -0.02 2.45 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 1.92 7.58 -2.39 -0.02 1.90 16 33 H 0.42 5.70 8.60 -92.71 -0.80 4.91 16 34 H 0.16 0.03 8.14 -2.38 -0.02 0.01 16 35 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.16 -0.51 7.74 -2.39 -0.02 -0.53 16 38 H 0.41 5.34 8.96 -92.71 -0.83 4.50 16 39 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 42 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -88.53 344.22 0.86 -87.67 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -0.42 Total: 10.29 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 5.03 Total: 16.42 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -6.29 Total: -122.29 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: 0.48 Total: -44.92 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.06 Total: 52.83 kcal Total: -88.53 0.86 -87.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004283625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.058 kcal (2) G-P(sol) polarization free energy of solvation -88.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds