Wall clock time and date at job start Fri Apr 10 2020 18:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86805 * 119.99639 * 2 1 4 4 H 1.48497 * 109.46928 * 239.99706 * 3 2 1 5 5 H 1.48500 * 109.46770 * 120.00367 * 3 2 1 6 6 H 1.48492 * 109.47261 * 0.02562 * 3 2 1 7 7 C 1.38805 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99665 * 155.02462 * 7 2 1 9 9 N 1.36939 * 120.00142 * 335.03066 * 7 2 1 10 10 C 1.46928 * 120.62907 * 152.50281 * 9 7 2 11 11 C 1.53191 * 108.77557 * 126.36988 * 10 9 7 12 12 C 1.53040 * 109.31682 * 54.62949 * 11 10 9 13 13 C 1.53041 * 109.53852 * 298.64077 * 12 11 10 14 14 H 1.09005 * 109.49589 * 301.37741 * 13 12 11 15 15 N 1.46500 * 109.49807 * 181.31276 * 13 12 11 16 16 C 1.34776 * 120.00004 * 154.99903 * 15 13 12 17 17 O 1.21286 * 119.99621 * 359.97438 * 16 15 13 18 18 C 1.50695 * 120.00050 * 180.02562 * 16 15 13 19 19 C 1.53238 * 109.62222 * 299.07185 * 18 16 15 20 20 C 1.50583 * 109.17388 * 184.67514 * 19 18 16 21 21 O 1.21223 * 119.36572 * 209.07645 * 20 19 18 22 22 N 1.34142 * 121.27648 * 29.08389 * 20 19 18 23 23 C 1.34141 * 122.59208 * 359.44675 * 22 20 19 24 24 O 1.21220 * 119.36369 * 180.54569 * 23 22 20 25 25 C 1.50590 * 121.27748 * 0.57433 * 23 22 20 26 26 C 1.46922 * 120.63030 * 332.21786 * 9 7 2 27 27 H 0.96999 * 119.99790 * 174.25738 * 1 2 3 28 28 H 1.09004 * 109.58191 * 246.14991 * 10 9 7 29 29 H 1.09000 * 109.58891 * 6.43350 * 10 9 7 30 30 H 1.08996 * 109.49842 * 174.58364 * 11 10 9 31 31 H 1.09001 * 109.49718 * 294.64906 * 11 10 9 32 32 H 1.09001 * 109.45737 * 58.65687 * 12 11 10 33 33 H 1.08995 * 109.46436 * 178.62877 * 12 11 10 34 34 H 0.96996 * 120.00167 * 334.99825 * 15 13 12 35 35 H 1.08998 * 109.62119 * 59.63146 * 18 16 15 36 36 H 1.09001 * 109.52606 * 304.57064 * 19 18 16 37 37 H 1.09011 * 109.51981 * 64.75995 * 19 18 16 38 38 H 0.97005 * 118.70972 * 179.48059 * 22 20 19 39 39 H 1.09000 * 109.52328 * 210.97695 * 25 23 22 40 40 H 1.09003 * 109.57545 * 90.81324 * 25 23 22 41 41 H 1.08997 * 109.58703 * 353.42553 * 26 9 7 42 42 H 1.09000 * 109.58443 * 113.84407 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 3.1040 1.6964 1.2125 6 1 1.2852 2.7465 0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0146 -1.2459 -0.3944 9 7 1.4216 -2.3324 0.5017 10 6 1.8123 -3.6607 0.0100 11 6 2.2022 -4.5343 1.2065 12 6 1.0529 -4.5510 2.2170 13 6 0.7937 -3.1293 2.7209 14 1 1.7006 -2.7349 3.1794 15 7 -0.2855 -3.1508 3.7113 16 6 -0.3649 -2.1797 4.6426 17 8 0.4574 -1.2884 4.6609 18 6 -1.4748 -2.2021 5.6617 19 6 -2.8290 -2.1159 4.9498 20 6 -3.9240 -2.0232 5.9794 21 8 -5.0231 -2.4635 5.7195 22 7 -3.7067 -1.4627 7.1785 23 6 -2.5140 -0.9650 7.5381 24 8 -2.3804 -0.4800 8.6410 25 6 -1.3381 -0.9965 6.5979 26 6 0.3919 -2.2402 1.5455 27 1 -0.4850 -0.8358 -0.0841 28 1 0.9740 -4.1162 -0.5172 29 1 2.6611 -3.5647 -0.6671 30 1 2.4017 -5.5502 0.8656 31 1 3.0962 -4.1268 1.6785 32 1 0.1531 -4.9358 1.7371 33 1 1.3181 -5.1915 3.0581 34 1 -0.9430 -3.8638 3.6969 35 1 -1.4208 -3.1235 6.2414 36 1 -2.8509 -1.2306 4.3144 37 1 -2.9771 -3.0071 4.3397 38 1 -4.4408 -1.4157 7.8108 39 1 -0.4153 -1.0835 7.1715 40 1 -1.3162 -0.0791 6.0096 41 1 0.3053 -1.2075 1.8832 42 1 -0.5646 -2.5775 1.1461 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008864574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:01 Heat of formation + Delta-G solvation = -97.504476 kcal Electronic energy + Delta-G solvation = -26333.896393 eV Core-core repulsion = 22506.978307 eV Total energy + Delta-G solvation = -3826.918086 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.84195 -39.81073 -39.11422 -37.70993 -35.67357 -34.46746 -34.05518 -32.93350 -29.97320 -29.39125 -28.91290 -25.39578 -25.15218 -23.49715 -22.27119 -22.01310 -20.29650 -19.64452 -19.41909 -18.10039 -17.61674 -17.43047 -17.20071 -16.08644 -15.81589 -15.42677 -14.92459 -14.74330 -14.64108 -14.31210 -14.23924 -13.98251 -13.56116 -13.45754 -13.37319 -12.77954 -12.64446 -12.34538 -12.05452 -11.78158 -11.63087 -11.22030 -11.11239 -10.94550 -10.68050 -10.58101 -10.53066 -10.42673 -10.32552 -10.08148 -9.92780 -9.63323 -9.41908 -8.82365 -8.38071 -6.92735 -6.09160 -3.26207 1.17211 2.39913 2.43389 2.64772 3.14730 3.50491 3.57247 3.62837 3.72668 4.05247 4.21549 4.33299 4.60086 4.61444 4.86591 5.06485 5.15072 5.19228 5.26288 5.31481 5.41690 5.48644 5.53575 5.59933 5.68042 5.85618 5.96102 6.09606 6.23603 6.26787 6.47006 6.48426 6.57817 6.66216 6.72606 6.93876 7.01214 7.17747 7.48236 7.60567 7.98672 8.30810 8.55044 9.07353 9.81421 10.23592 11.19064 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.004111 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.011305 B = 6809.794557 C = 7688.886178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.018 4.018 3 Si 1.061 2.939 4 H -0.293 1.293 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.353 4.353 8 H 0.057 0.943 9 N -0.594 5.594 10 C 0.144 3.856 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.122 3.878 14 H 0.087 0.913 15 N -0.718 5.718 16 C 0.517 3.483 17 O -0.519 6.519 18 C -0.112 4.112 19 C -0.138 4.138 20 C 0.532 3.468 21 O -0.500 6.500 22 N -0.677 5.677 23 C 0.529 3.471 24 O -0.501 6.501 25 C -0.125 4.125 26 C 0.146 3.854 27 H 0.267 0.733 28 H 0.017 0.983 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.394 0.606 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.412 0.588 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.087 0.913 42 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 -9.169 11.297 15.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.220 4.220 3 Si 0.891 3.109 4 H -0.220 1.220 5 H -0.218 1.218 6 H -0.211 1.211 7 C -0.482 4.482 8 H 0.075 0.925 9 N -0.318 5.318 10 C 0.018 3.982 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.017 3.983 14 H 0.105 0.895 15 N -0.369 5.369 16 C 0.301 3.699 17 O -0.394 6.394 18 C -0.134 4.134 19 C -0.178 4.178 20 C 0.320 3.680 21 O -0.372 6.372 22 N -0.342 5.342 23 C 0.318 3.682 24 O -0.373 6.373 25 C -0.165 4.165 26 C 0.018 3.982 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.227 0.773 35 H 0.129 0.871 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.251 0.749 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.105 0.895 42 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -4.385 -6.817 11.623 14.170 hybrid contribution -0.487 -2.126 0.146 2.186 sum -4.872 -8.943 11.769 15.564 Atomic orbital electron populations 1.70802 1.06648 1.30140 1.47573 1.25819 0.96459 1.01441 0.98307 0.83583 0.74960 0.76115 0.76251 1.21964 1.21847 1.21062 1.19945 0.97660 0.88479 1.42137 0.92533 1.44025 1.46297 1.01490 1.40026 1.20956 0.97661 0.86332 0.93274 1.21994 0.97785 0.99529 0.97794 1.21675 0.99492 0.95610 0.98650 1.21805 0.90077 0.96764 0.89695 0.89537 1.46104 1.31520 1.27610 1.31655 1.19951 0.85850 0.82416 0.81674 1.90811 1.41176 1.34792 1.72595 1.21513 0.94039 1.01055 0.96764 1.21994 0.90315 1.08253 0.97192 1.20806 0.89972 0.75168 0.82017 1.90810 1.25102 1.43826 1.77483 1.44904 1.14948 1.56149 1.18222 1.20999 0.83853 0.75291 0.88038 1.90797 1.83617 1.41255 1.21628 1.21812 0.96666 1.00870 0.97134 1.21184 0.90576 0.99748 0.86653 0.92210 0.96519 0.92431 0.92431 0.91980 0.92163 0.92745 0.77251 0.87098 0.85689 0.86060 0.74853 0.85843 0.85579 0.89493 0.96656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.85 12.41 55.49 0.69 -26.16 16 2 C -0.02 -0.50 4.69 -17.43 -0.08 -0.58 16 3 Si 1.06 25.44 29.99 -169.99 -5.10 20.35 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.35 -9.73 9.49 -15.06 -0.14 -9.87 16 8 H 0.06 1.56 7.94 -52.48 -0.42 1.15 16 9 N -0.59 -14.33 2.86 -172.59 -0.49 -14.83 16 10 C 0.14 2.84 6.52 -3.71 -0.02 2.82 16 11 C -0.13 -2.06 6.08 -26.61 -0.16 -2.22 16 12 C -0.12 -1.64 5.36 -26.69 -0.14 -1.79 16 13 C 0.12 2.07 2.59 -68.03 -0.18 1.89 16 14 H 0.09 1.73 7.58 -51.93 -0.39 1.33 16 15 N -0.72 -9.16 5.00 -53.91 -0.27 -9.43 16 16 C 0.52 6.87 7.12 -10.99 -0.08 6.79 16 17 O -0.52 -9.51 15.61 5.55 0.09 -9.42 16 18 C -0.11 -0.96 2.66 -91.52 -0.24 -1.21 16 19 C -0.14 -1.12 5.24 -27.82 -0.15 -1.27 16 20 C 0.53 4.97 7.74 -11.33 -0.09 4.88 16 21 O -0.50 -6.28 17.87 5.61 0.10 -6.18 16 22 N -0.68 -5.81 5.09 -11.75 -0.06 -5.87 16 23 C 0.53 5.21 7.74 -11.32 -0.09 5.12 16 24 O -0.50 -6.57 17.87 5.61 0.10 -6.47 16 25 C -0.13 -1.17 4.70 -27.81 -0.13 -1.31 16 26 C 0.15 3.20 4.24 -3.94 -0.02 3.19 16 27 H 0.27 7.87 6.72 -40.82 -0.27 7.59 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.39 3.60 8.19 -40.82 -0.33 3.26 16 35 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.12 0.82 7.77 -51.92 -0.40 0.41 16 38 H 0.41 3.16 8.79 -40.82 -0.36 2.80 16 39 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.13 1.28 7.98 -51.93 -0.41 0.86 16 41 H 0.09 2.28 6.30 -51.93 -0.33 1.95 16 42 H 0.02 0.34 7.87 -51.93 -0.41 -0.07 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -35.28 344.39 -7.19 -42.48 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.92 Total: 3.90 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -1.52 Total: 6.45 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.13 Total: -56.29 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.29 Total: -22.07 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.10 Total: 20.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.28 -7.19 -42.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008864574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.026 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds